Wall clock time and date at job start Mon Mar 30 2020 02:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34775 * 119.99828 * 2 1 4 4 O 1.21283 * 120.00338 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.99991 * 0.02562 * 3 2 1 6 6 C 1.50704 * 109.46850 * 179.97438 * 5 3 2 7 7 H 1.07995 * 120.00329 * 359.97438 * 6 5 3 8 8 C 1.37883 * 119.99800 * 180.02562 * 6 5 3 9 9 N 1.31517 * 119.99799 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 119.99887 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47564 * 60.00040 * 10 8 6 12 12 H 1.48505 * 109.46849 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47209 * 299.99785 * 10 8 6 14 14 C 1.46498 * 120.00021 * 180.02562 * 2 1 3 15 15 H 1.09004 * 110.62857 * 178.34661 * 14 2 1 16 16 C 1.55422 * 110.84743 * 55.16013 * 14 2 1 17 17 C 1.54908 * 101.52379 * 205.90541 * 16 14 2 18 18 N 1.47846 * 104.89238 * 37.06612 * 17 16 14 19 19 C 1.46900 * 111.00020 * 213.57993 * 18 17 16 20 20 C 1.47448 * 108.56553 * 335.84749 * 18 17 16 21 21 H 1.09000 * 109.47077 * 269.99316 * 1 2 3 22 22 H 1.08995 * 109.47113 * 30.00020 * 1 2 3 23 23 H 1.08999 * 109.47112 * 149.99621 * 1 2 3 24 24 H 1.08995 * 109.47340 * 299.99681 * 5 3 2 25 25 H 1.08999 * 109.47143 * 60.00199 * 5 3 2 26 26 H 0.96999 * 119.99881 * 179.97438 * 9 8 6 27 27 H 1.08998 * 111.10859 * 87.83694 * 16 14 2 28 28 H 1.08998 * 111.00401 * 323.92812 * 16 14 2 29 29 H 1.09002 * 110.37460 * 278.18013 * 17 16 14 30 30 H 1.08999 * 110.37548 * 155.95084 * 17 16 14 31 31 H 1.09004 * 109.46560 * 59.87397 * 19 18 17 32 32 H 1.08994 * 109.46901 * 179.86935 * 19 18 17 33 33 H 1.08999 * 109.47478 * 299.87719 * 19 18 17 34 34 H 1.08999 * 109.88737 * 120.39623 * 20 18 17 35 35 H 1.09000 * 109.88899 * 241.58505 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3646 3.6178 0.0011 7 1 3.4264 3.4205 0.0014 8 6 1.9050 4.9177 0.0022 9 7 0.6120 5.1580 0.0023 10 14 3.1189 6.3375 0.0021 11 1 3.9717 6.2597 -1.2110 12 1 2.3763 7.6236 0.0028 13 1 3.9735 6.2582 1.2140 14 6 2.1975 -1.2687 -0.0006 15 1 3.2727 -1.0914 -0.0299 16 6 1.7555 -2.1621 -1.1931 17 6 2.0745 -3.5786 -0.6534 18 7 1.7389 -3.5217 0.7853 19 6 2.6408 -4.3749 1.5705 20 6 1.8181 -2.1183 1.2306 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3633 0.8899 -0.5138 23 1 -0.3633 -0.8899 -0.5139 24 1 0.7584 2.5303 -0.8891 25 1 0.7590 2.5299 0.8908 26 1 0.2886 6.0725 0.0035 27 1 2.3414 -1.9433 -2.0858 28 1 0.6894 -2.0505 -1.3906 29 1 3.1319 -3.8067 -0.7877 30 1 1.4594 -4.3241 -1.1574 31 1 3.6686 -4.0377 1.4358 32 1 2.3733 -4.3125 2.6252 33 1 2.5500 -5.4073 1.2329 34 1 0.8515 -1.7974 1.6189 35 1 2.5822 -2.0163 2.0013 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258725205.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:07 Heat of formation + Delta-G solvation = -51.796065 kcal Electronic energy + Delta-G solvation = -15974.374769 eV Core-core repulsion = 13392.445084 eV Total energy + Delta-G solvation = -2581.929685 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.14555 -39.40697 -36.19433 -35.13913 -32.52125 -30.93787 -29.52979 -27.76909 -26.56968 -25.39501 -22.13495 -21.95761 -20.04197 -18.69521 -17.81253 -17.41298 -16.66127 -16.41805 -16.28702 -15.50509 -15.05544 -14.55093 -14.41957 -14.10245 -14.04276 -13.57678 -13.30075 -13.13043 -12.97840 -12.74532 -12.71815 -12.55785 -12.27840 -12.21569 -12.03416 -11.69981 -11.42061 -10.63067 -10.51738 -9.68729 -9.29063 -8.25874 -6.33463 1.39384 1.42146 1.50825 1.79798 2.08606 2.43056 3.03588 3.09051 3.61907 3.66158 3.90407 4.17035 4.23946 4.27131 4.40934 4.50083 4.53693 4.64387 4.68160 4.80781 4.91758 4.96914 5.02262 5.03229 5.05516 5.16154 5.26210 5.62760 5.75740 5.87244 6.01901 6.04112 6.50498 6.79027 7.31578 7.42409 8.85977 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.056756 B = 0.005666 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.221894 B = 4940.912740 C = 5110.714929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.515 3.485 4 O -0.588 6.588 5 C 0.016 3.984 6 C -0.541 4.541 7 H 0.052 0.948 8 C 0.013 3.987 9 N -0.922 5.922 10 Si 0.964 3.036 11 H -0.273 1.273 12 H -0.272 1.272 13 H -0.273 1.273 14 C 0.112 3.888 15 H 0.073 0.927 16 C -0.134 4.134 17 C 0.047 3.953 18 N -0.535 5.535 19 C 0.017 3.983 20 C 0.039 3.961 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.098 0.902 24 H 0.043 0.957 25 H 0.041 0.959 26 H 0.268 0.732 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.024 0.976 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.794 -17.556 -0.034 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.345 5.345 3 C 0.307 3.693 4 O -0.468 6.468 5 C -0.023 4.023 6 C -0.579 4.579 7 H 0.070 0.930 8 C -0.186 4.186 9 N -0.562 5.562 10 Si 0.788 3.212 11 H -0.198 1.198 12 H -0.197 1.197 13 H -0.199 1.199 14 C 0.007 3.993 15 H 0.091 0.909 16 C -0.173 4.173 17 C -0.081 4.081 18 N -0.259 5.259 19 C -0.131 4.131 20 C -0.090 4.090 21 H 0.082 0.918 22 H 0.088 0.912 23 H 0.116 0.884 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.122 0.878 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.809 -17.618 0.057 17.710 hybrid contribution 1.389 1.303 0.008 1.904 sum -0.421 -16.315 0.065 16.321 Atomic orbital electron populations 1.21920 0.77596 1.04106 1.02783 1.47936 1.08116 1.04582 1.73819 1.21643 0.87827 0.86637 0.73225 1.90486 1.16506 1.88021 1.51829 1.19041 0.96038 0.88597 0.98619 1.21355 0.93573 0.91449 1.51562 0.92957 1.25767 0.97215 1.01276 0.94367 1.70016 1.13821 1.21439 1.50913 0.85524 0.78814 0.77976 0.78850 1.19813 1.19669 1.19860 1.22336 0.96782 0.83469 0.96687 0.90913 1.23113 1.03255 0.93994 0.96902 1.23066 1.00270 0.96842 0.87889 1.63689 1.51628 1.06719 1.03905 1.22630 0.93507 0.98166 0.98804 1.23077 1.01889 0.88006 0.96012 0.91802 0.91182 0.88389 0.93888 0.94107 0.92309 0.90566 0.88851 0.92982 0.87840 0.95764 0.90943 0.89510 0.89640 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.17 9.13 127.77 1.17 3.34 16 2 N -0.61 -21.95 2.88 -815.43 -2.35 -24.31 16 3 C 0.52 24.70 7.67 87.66 0.67 25.37 16 4 O -0.59 -32.40 14.83 -3.04 -0.05 -32.45 16 5 C 0.02 0.86 4.01 29.10 0.12 0.98 16 6 C -0.54 -32.54 8.92 25.60 0.23 -32.31 16 7 H 0.05 3.31 6.75 -2.91 -0.02 3.29 16 8 C 0.01 0.73 5.46 84.66 0.46 1.20 16 9 N -0.92 -54.16 13.29 21.45 0.28 -53.87 16 10 Si 0.96 45.73 29.54 68.60 2.03 47.75 16 11 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 14 C 0.11 3.45 3.35 46.27 0.15 3.60 16 15 H 0.07 2.68 6.99 -2.38 -0.02 2.66 16 16 C -0.13 -3.10 6.63 32.08 0.21 -2.89 16 17 C 0.05 0.89 6.72 86.77 0.58 1.48 16 18 N -0.53 -11.46 5.44 -911.68 -4.96 -16.43 16 19 C 0.02 0.30 9.13 127.69 1.17 1.47 16 20 C 0.04 1.02 6.54 86.65 0.57 1.59 16 21 H 0.06 1.65 7.89 -2.39 -0.02 1.63 16 22 H 0.07 2.14 6.44 -2.39 -0.02 2.12 16 23 H 0.10 2.09 6.10 -2.39 -0.01 2.08 16 24 H 0.04 2.28 7.40 -2.39 -0.02 2.26 16 25 H 0.04 2.18 8.11 -2.39 -0.02 2.16 16 26 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 27 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.09 1.96 6.12 -2.39 -0.01 1.95 16 29 H 0.05 0.96 7.77 -2.39 -0.02 0.94 16 30 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.02 0.44 8.08 -2.39 -0.02 0.42 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.09 2.20 6.94 -2.39 -0.02 2.19 16 35 H 0.05 1.37 7.58 -2.39 -0.02 1.36 16 Total: -1.00 -69.63 281.92 1.34 -68.29 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: 1.06 Total: 7.19 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 5.33 Total: 3.82 kcal Atomic # 7 Polarization: -87.58 SS G_CDS: -7.03 Total: -94.61 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.05 Total: -32.45 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -69.63 1.34 -68.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258725205.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.497 kcal (2) G-P(sol) polarization free energy of solvation -69.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds