Wall clock time and date at job start Mon Mar 30 2020 02:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 119.99744 * 2 1 4 4 O 1.21280 * 119.99761 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.00338 * 359.97438 * 3 2 1 6 6 C 1.50694 * 109.47166 * 179.97438 * 5 3 2 7 7 H 1.08000 * 120.00563 * 0.02562 * 6 5 3 8 8 C 1.37885 * 119.99902 * 180.02562 * 6 5 3 9 9 N 1.31516 * 119.99913 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99766 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47353 * 269.99586 * 10 8 6 12 12 H 1.48501 * 109.47293 * 30.00037 * 10 8 6 13 13 H 1.48504 * 109.46680 * 149.99835 * 10 8 6 14 14 C 1.46497 * 119.99968 * 180.02562 * 2 1 3 15 15 H 1.09004 * 110.27523 * 179.29589 * 14 2 1 16 16 C 1.54595 * 110.31206 * 301.38786 * 14 2 1 17 17 C 1.55200 * 102.80335 * 96.97759 * 16 14 2 18 18 N 1.48535 * 103.23197 * 37.43779 * 17 16 14 19 19 C 1.46899 * 110.99680 * 200.24990 * 18 17 16 20 20 C 1.47898 * 105.82410 * 320.76726 * 18 17 16 21 21 H 1.09004 * 109.47343 * 89.99906 * 1 2 3 22 22 H 1.09005 * 109.47039 * 209.99752 * 1 2 3 23 23 H 1.08993 * 109.47349 * 329.99927 * 1 2 3 24 24 H 1.09007 * 109.46871 * 59.99694 * 5 3 2 25 25 H 1.09003 * 109.46889 * 300.00448 * 5 3 2 26 26 H 0.97001 * 119.99646 * 179.97438 * 9 8 6 27 27 H 1.08996 * 110.72659 * 215.31947 * 16 14 2 28 28 H 1.09005 * 110.72291 * 338.60548 * 16 14 2 29 29 H 1.08999 * 110.68139 * 278.99095 * 17 16 14 30 30 H 1.08998 * 110.78336 * 155.93527 * 17 16 14 31 31 H 1.09001 * 109.47229 * 177.39453 * 19 18 17 32 32 H 1.08993 * 109.47884 * 297.40114 * 19 18 17 33 33 H 1.08999 * 109.46939 * 57.40382 * 19 18 17 34 34 H 1.08997 * 109.91859 * 265.98229 * 20 18 17 35 35 H 1.08999 * 109.91879 * 144.68130 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3646 3.6177 0.0002 7 1 3.4265 3.4204 0.0006 8 6 1.9050 4.9177 0.0004 9 7 0.6120 5.1580 -0.0006 10 14 3.1189 6.3375 0.0020 11 1 3.4393 6.7132 1.4025 12 1 4.3628 5.9261 -0.6971 13 1 2.5195 7.5019 -0.6981 14 6 2.1975 -1.2687 -0.0006 15 1 3.2718 -1.0846 -0.0131 16 6 1.8119 -2.1116 1.2367 17 6 0.7305 -3.0726 0.6747 18 7 1.2301 -3.3868 -0.6883 19 6 0.1448 -3.8815 -1.5457 20 6 1.7874 -2.1222 -1.2151 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3634 0.8899 0.5138 24 1 0.7583 2.5302 0.8892 25 1 0.7590 2.5298 -0.8908 26 1 0.2887 6.0725 -0.0001 27 1 2.6716 -2.6707 1.6057 28 1 1.3969 -1.4782 2.0208 29 1 -0.2380 -2.5750 0.6243 30 1 0.6656 -3.9775 1.2789 31 1 0.5280 -4.0600 -2.5504 32 1 -0.2470 -4.8122 -1.1356 33 1 -0.6522 -3.1390 -1.5876 34 1 1.0309 -1.5978 -1.7989 35 1 2.6599 -2.3303 -1.8343 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258725206.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:10 Heat of formation + Delta-G solvation = -49.306952 kcal Electronic energy + Delta-G solvation = -16112.233545 eV Core-core repulsion = 13530.411796 eV Total energy + Delta-G solvation = -2581.821749 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.26199 -39.36456 -36.00593 -35.14868 -32.60864 -30.88598 -29.73266 -27.71524 -26.49707 -25.38156 -22.22151 -21.92320 -19.97882 -18.69693 -17.80581 -17.47770 -16.65344 -16.58249 -16.22167 -15.51973 -15.21862 -14.46051 -14.34488 -14.03619 -13.95365 -13.59134 -13.33424 -13.19235 -12.80361 -12.78520 -12.54922 -12.45222 -12.41305 -12.23365 -12.04329 -11.81310 -11.41287 -10.63844 -10.48096 -9.69355 -9.37507 -8.26907 -6.34367 1.39349 1.40148 1.52865 1.80261 2.07893 2.42727 3.08207 3.09967 3.54508 3.68677 4.05162 4.08502 4.14047 4.35409 4.38914 4.50331 4.56666 4.61398 4.64128 4.81589 4.90087 5.00021 5.02932 5.04292 5.07562 5.12716 5.24108 5.55646 5.71529 5.88644 6.01880 6.03570 6.48866 6.78605 7.31182 7.42348 8.85196 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.057490 B = 0.005860 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.927503 B = 4777.340473 C = 4935.732682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.614 5.614 3 C 0.516 3.484 4 O -0.585 6.585 5 C 0.016 3.984 6 C -0.540 4.540 7 H 0.053 0.947 8 C 0.012 3.988 9 N -0.923 5.923 10 Si 0.964 3.036 11 H -0.270 1.270 12 H -0.275 1.275 13 H -0.272 1.272 14 C 0.120 3.880 15 H 0.079 0.921 16 C -0.128 4.128 17 C 0.036 3.964 18 N -0.527 5.527 19 C 0.015 3.985 20 C 0.035 3.965 21 H 0.058 0.942 22 H 0.095 0.905 23 H 0.070 0.930 24 H 0.042 0.958 25 H 0.039 0.961 26 H 0.268 0.732 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.031 0.969 34 H 0.051 0.949 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.905 -16.710 -0.044 17.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.348 5.348 3 C 0.307 3.693 4 O -0.464 6.464 5 C -0.023 4.023 6 C -0.578 4.578 7 H 0.071 0.929 8 C -0.187 4.187 9 N -0.563 5.563 10 Si 0.789 3.211 11 H -0.196 1.196 12 H -0.200 1.200 13 H -0.197 1.197 14 C 0.016 3.984 15 H 0.097 0.903 16 C -0.166 4.166 17 C -0.091 4.091 18 N -0.252 5.252 19 C -0.134 4.134 20 C -0.095 4.095 21 H 0.077 0.923 22 H 0.113 0.887 23 H 0.089 0.911 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.029 -16.996 -0.053 17.467 hybrid contribution -0.118 1.616 -0.180 1.630 sum -4.146 -15.381 -0.233 15.931 Atomic orbital electron populations 1.21974 0.78201 1.04115 1.02350 1.48107 1.07810 1.04897 1.74018 1.21609 0.87852 0.86567 0.73269 1.90494 1.16403 1.87967 1.51581 1.19042 0.96050 0.88762 0.98481 1.21388 0.93609 0.91409 1.51379 0.92873 1.25778 0.97220 1.01321 0.94361 1.70025 1.13849 1.21379 1.51060 0.85459 0.78796 0.78223 0.78636 1.19578 1.20017 1.19731 1.21916 0.97298 0.83021 0.96212 0.90285 1.22887 1.00237 0.97243 0.96269 1.23469 0.96185 0.99405 0.90065 1.64808 1.31142 1.26029 1.03182 1.22584 0.92241 1.00666 0.97883 1.23122 1.00428 0.89684 0.96218 0.92317 0.88701 0.91118 0.93996 0.94288 0.92330 0.89248 0.90559 0.92441 0.88001 0.91114 0.89632 0.94996 0.93036 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.11 9.19 127.77 1.17 3.28 16 2 N -0.61 -21.92 2.73 -817.67 -2.24 -24.16 16 3 C 0.52 24.63 7.67 87.66 0.67 25.30 16 4 O -0.58 -32.09 14.82 -3.03 -0.04 -32.14 16 5 C 0.02 0.84 4.01 29.10 0.12 0.96 16 6 C -0.54 -32.40 8.92 25.60 0.23 -32.18 16 7 H 0.05 3.37 6.75 -2.91 -0.02 3.35 16 8 C 0.01 0.69 5.46 84.66 0.46 1.15 16 9 N -0.92 -54.18 13.29 21.45 0.28 -53.89 16 10 Si 0.96 45.69 29.54 68.60 2.03 47.72 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 14 C 0.12 3.67 3.43 45.87 0.16 3.83 16 15 H 0.08 2.89 6.96 -2.38 -0.02 2.88 16 16 C -0.13 -3.01 6.20 31.89 0.20 -2.82 16 17 C 0.04 0.67 6.19 86.74 0.54 1.20 16 18 N -0.53 -11.06 5.55 -908.62 -5.05 -16.11 16 19 C 0.01 0.24 9.40 127.69 1.20 1.44 16 20 C 0.03 0.89 6.20 86.45 0.54 1.42 16 21 H 0.06 1.53 7.86 -2.39 -0.02 1.51 16 22 H 0.09 2.03 4.86 -2.38 -0.01 2.02 16 23 H 0.07 2.16 6.44 -2.39 -0.02 2.15 16 24 H 0.04 2.22 7.40 -2.38 -0.02 2.21 16 25 H 0.04 2.08 8.11 -2.39 -0.02 2.06 16 26 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 27 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.08 1.86 8.04 -2.38 -0.02 1.84 16 29 H 0.06 0.98 5.76 -2.39 -0.01 0.97 16 30 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.03 0.50 8.00 -2.39 -0.02 0.49 16 34 H 0.05 1.35 6.69 -2.39 -0.02 1.33 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -69.39 279.81 1.33 -68.05 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.07 Total: 6.93 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 5.28 Total: 3.59 kcal Atomic # 7 Polarization: -87.16 SS G_CDS: -7.00 Total: -94.16 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -0.04 Total: -32.14 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -69.39 1.33 -68.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258725206.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.748 kcal (2) G-P(sol) polarization free energy of solvation -69.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds