Wall clock time and date at job start Mon Mar 30 2020 02:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 111.00009 * 2 1 4 4 C 1.50695 * 109.47519 * 66.04512 * 3 2 1 5 5 O 1.21443 * 119.99580 * 0.02562 * 4 3 2 6 6 C 1.41023 * 120.00345 * 180.02562 * 4 3 2 7 7 H 1.08001 * 119.99686 * 359.97438 * 6 4 3 8 8 C 1.40458 * 119.99958 * 180.02562 * 6 4 3 9 9 N 1.30524 * 120.00115 * 359.97438 * 8 6 4 10 10 Si 1.86805 * 119.99979 * 180.27270 * 8 6 4 11 11 H 1.48497 * 109.47319 * 179.72037 * 10 8 6 12 12 H 1.48498 * 109.47165 * 299.72394 * 10 8 6 13 13 H 1.48501 * 109.47099 * 59.72219 * 10 8 6 14 14 C 1.46899 * 111.00019 * 236.04511 * 2 1 3 15 15 H 1.08999 * 110.27308 * 63.31943 * 14 2 1 16 16 C 1.54593 * 110.30969 * 301.12092 * 14 2 1 17 17 C 1.54935 * 102.91952 * 219.12634 * 16 14 2 18 18 N 1.48533 * 103.22948 * 37.41411 * 17 16 14 19 19 C 1.46904 * 110.99744 * 200.27682 * 18 17 16 20 20 C 1.47889 * 105.81963 * 320.79270 * 18 17 16 21 21 H 1.08992 * 109.47289 * 60.00254 * 1 2 3 22 22 H 1.09003 * 109.46992 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46850 * 300.00081 * 1 2 3 24 24 H 1.09008 * 109.46978 * 306.04856 * 3 2 1 25 25 H 1.08998 * 109.47488 * 186.04773 * 3 2 1 26 26 H 0.97005 * 119.99940 * 180.02562 * 9 8 6 27 27 H 1.09001 * 110.72330 * 337.48574 * 16 14 2 28 28 H 1.09000 * 110.72525 * 100.76609 * 16 14 2 29 29 H 1.09000 * 110.67008 * 278.97659 * 17 16 14 30 30 H 1.09003 * 110.80936 * 155.91474 * 17 16 14 31 31 H 1.09005 * 109.46653 * 177.39815 * 19 18 17 32 32 H 1.09004 * 109.46895 * 297.39563 * 19 18 17 33 33 H 1.08996 * 109.47195 * 57.39591 * 19 18 17 34 34 H 1.09005 * 109.91993 * 265.97543 * 20 18 17 35 35 H 1.09000 * 109.92044 * 144.68332 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0046 1.4446 2.1421 6 6 2.0357 3.3793 1.5336 7 1 2.5983 3.9150 0.7834 8 6 1.7020 4.0089 2.7440 9 7 1.0224 3.3613 3.6509 10 14 2.2236 5.7759 3.0526 11 1 1.7462 6.2065 4.3912 12 1 3.7046 5.8711 3.0010 13 1 1.6345 6.6550 2.0107 14 6 1.9954 -0.7660 -1.1376 15 1 1.7021 -0.2970 -2.0768 16 6 1.4881 -2.2253 -1.0826 17 6 2.7260 -3.0396 -1.5354 18 7 3.8602 -2.3053 -0.9185 19 6 5.1231 -2.6182 -1.6005 20 6 3.5293 -0.8698 -1.0481 21 1 -0.3633 0.5137 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.5610 1.9274 -0.8310 25 1 3.0797 1.3445 -0.1083 26 1 0.7916 3.7962 4.4867 27 1 1.1993 -2.4952 -0.0668 28 1 0.6570 -2.3710 -1.7726 29 1 2.8117 -3.0372 -2.6220 30 1 2.6774 -4.0607 -1.1570 31 1 5.9293 -2.0324 -1.1588 32 1 5.3426 -3.6801 -1.4895 33 1 5.0345 -2.3742 -2.6591 34 1 3.9823 -0.4645 -1.9529 35 1 3.8879 -0.3256 -0.1743 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259361786.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:02 Heat of formation + Delta-G solvation = -44.314110 kcal Electronic energy + Delta-G solvation = -16087.811992 eV Core-core repulsion = 13506.206749 eV Total energy + Delta-G solvation = -2581.605243 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.50422 -38.88028 -36.61047 -34.63454 -32.24692 -30.21932 -29.73928 -27.69483 -26.35750 -24.63513 -22.15422 -21.46603 -20.54770 -18.39322 -17.51258 -17.23574 -16.66223 -15.83900 -15.63454 -15.34936 -15.13409 -14.69441 -14.35404 -14.02583 -13.82140 -13.25377 -13.24591 -12.96587 -12.86637 -12.57866 -12.32500 -12.19611 -12.11731 -12.05835 -12.00621 -11.83894 -11.71631 -10.90136 -9.51965 -9.34501 -9.01013 -8.19633 -7.03396 1.38439 1.38743 1.53151 2.23116 2.25283 3.02072 3.13164 3.42601 3.61618 3.81456 4.19094 4.27200 4.33231 4.42792 4.49357 4.51165 4.58576 4.65179 4.70782 4.75897 4.89975 4.93360 4.95538 5.00929 5.02958 5.19009 5.22748 5.28235 5.90733 5.99954 6.09453 6.16829 6.41645 6.77356 6.90890 8.36408 8.58949 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.043776 B = 0.006279 C = 0.005808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.467694 B = 4458.061725 C = 4819.736964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.531 5.531 3 C 0.027 3.973 4 C 0.345 3.655 5 O -0.568 6.568 6 C -0.571 4.571 7 H 0.082 0.918 8 C 0.029 3.971 9 N -0.791 5.791 10 Si 0.991 3.009 11 H -0.270 1.270 12 H -0.254 1.254 13 H -0.254 1.254 14 C 0.067 3.933 15 H 0.047 0.953 16 C -0.112 4.112 17 C 0.042 3.958 18 N -0.542 5.542 19 C 0.017 3.983 20 C 0.047 3.953 21 H 0.019 0.981 22 H 0.077 0.923 23 H 0.052 0.948 24 H 0.040 0.960 25 H 0.085 0.915 26 H 0.280 0.720 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.037 0.963 34 H 0.056 0.944 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.377 -6.942 -11.883 14.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.255 5.255 3 C -0.102 4.102 4 C 0.241 3.759 5 O -0.459 6.459 6 C -0.603 4.603 7 H 0.101 0.899 8 C -0.190 4.190 9 N -0.421 5.421 10 Si 0.810 3.190 11 H -0.195 1.195 12 H -0.178 1.178 13 H -0.178 1.178 14 C -0.041 4.041 15 H 0.065 0.935 16 C -0.150 4.150 17 C -0.085 4.085 18 N -0.267 5.267 19 C -0.131 4.131 20 C -0.081 4.081 21 H 0.037 0.963 22 H 0.096 0.904 23 H 0.071 0.929 24 H 0.058 0.942 25 H 0.103 0.897 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.228 -7.677 -10.380 13.586 hybrid contribution -0.164 1.508 -1.222 1.948 sum 4.064 -6.169 -11.602 13.755 Atomic orbital electron populations 1.22297 0.87314 1.01681 0.99943 1.61837 1.08308 1.13371 1.41985 1.22396 1.00299 0.88540 0.98920 1.20132 0.80708 0.88327 0.86773 1.90332 1.40543 1.67385 1.47600 1.21265 1.35492 1.00334 1.03200 0.89945 1.27165 0.92412 1.04715 0.94663 1.70090 1.26923 1.39244 1.05813 0.85166 0.79888 0.75479 0.78432 1.19478 1.17814 1.17759 1.22632 0.94756 0.95359 0.91401 0.93478 1.22564 0.98005 0.92240 1.02219 1.23244 0.89183 0.98501 0.97599 1.64681 1.03716 1.04860 1.53414 1.22557 0.91395 1.02739 0.96412 1.22862 0.94507 0.90259 1.00477 0.96279 0.90428 0.92942 0.94245 0.89657 0.91009 0.91517 0.89295 0.92154 0.88888 0.91628 0.89966 0.94460 0.92534 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.46 8.98 127.69 1.15 2.61 16 2 N -0.53 -22.49 4.28 -896.44 -3.84 -26.33 16 3 C 0.03 1.25 5.08 85.55 0.44 1.68 16 4 C 0.34 20.05 6.63 26.37 0.17 20.22 16 5 O -0.57 -37.38 12.83 -3.54 -0.05 -37.42 16 6 C -0.57 -32.47 9.22 23.49 0.22 -32.25 16 7 H 0.08 4.24 7.85 -2.91 -0.02 4.22 16 8 C 0.03 1.61 5.50 85.43 0.47 2.08 16 9 N -0.79 -47.58 11.72 21.91 0.26 -47.33 16 10 Si 0.99 40.20 29.56 68.60 2.03 42.23 16 11 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 12 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 13 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 14 C 0.07 2.19 2.73 45.80 0.12 2.31 16 15 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 16 C -0.11 -3.03 5.44 31.80 0.17 -2.86 16 17 C 0.04 0.97 6.56 86.65 0.57 1.54 16 18 N -0.54 -15.08 5.55 -909.16 -5.05 -20.13 16 19 C 0.02 0.36 9.40 127.69 1.20 1.56 16 20 C 0.05 1.47 5.77 86.45 0.50 1.97 16 21 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 22 H 0.08 2.73 6.70 -2.39 -0.02 2.71 16 23 H 0.05 2.65 5.88 -2.38 -0.01 2.63 16 24 H 0.04 1.71 8.12 -2.38 -0.02 1.69 16 25 H 0.09 3.69 6.17 -2.39 -0.01 3.67 16 26 H 0.28 15.13 8.29 -92.70 -0.77 14.36 16 27 H 0.07 2.12 7.62 -2.39 -0.02 2.10 16 28 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.06 1.14 7.96 -2.39 -0.02 1.13 16 30 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.06 1.38 8.14 -2.38 -0.02 1.37 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.04 0.68 8.00 -2.39 -0.02 0.66 16 34 H 0.06 1.52 7.73 -2.38 -0.02 1.50 16 35 H 0.06 2.34 6.50 -2.39 -0.02 2.32 16 Total: -1.00 -71.65 280.27 -0.58 -72.23 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 1.06 Total: 17.90 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 5.01 Total: -1.15 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -8.63 Total: -93.78 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -0.05 Total: -37.42 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -71.65 -0.58 -72.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259361786.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.913 kcal (2) G-P(sol) polarization free energy of solvation -71.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds