Wall clock time and date at job start Mon Mar 30 2020 03:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47223 * 2 1 4 4 C 1.53007 * 109.47454 * 239.99912 * 2 1 3 5 5 H 1.09004 * 109.46877 * 306.03803 * 4 2 1 6 6 C 1.50705 * 109.46834 * 66.03015 * 4 2 1 7 7 H 1.08000 * 119.99829 * 89.61867 * 6 4 2 8 8 C 1.37875 * 119.99985 * 269.62191 * 6 4 2 9 9 N 1.31512 * 120.00253 * 354.21460 * 8 6 4 10 10 Si 1.86803 * 119.99935 * 174.21317 * 8 6 4 11 11 H 1.48500 * 109.46954 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46954 * 119.99745 * 10 8 6 13 13 H 1.48501 * 109.47205 * 239.99880 * 10 8 6 14 14 C 1.52991 * 109.47337 * 186.02957 * 4 2 1 15 15 H 1.09002 * 109.54369 * 305.74608 * 14 4 2 16 16 C 1.54202 * 109.53778 * 185.57805 * 14 4 2 17 17 C 1.46288 * 111.98671 * 162.60773 * 16 14 4 18 18 C 1.54111 * 112.20341 * 61.41546 * 17 16 14 19 19 O 1.40322 * 108.70452 * 280.43833 * 18 17 16 20 20 C 1.43984 * 116.58128 * 95.04268 * 19 18 17 21 21 C 1.50630 * 109.53778 * 65.99247 * 14 4 2 22 22 H 1.09002 * 109.47387 * 176.51391 * 1 2 3 23 23 H 1.09000 * 109.47150 * 296.51729 * 1 2 3 24 24 H 1.09003 * 109.47293 * 56.51940 * 1 2 3 25 25 H 1.09000 * 109.47398 * 120.00274 * 2 1 3 26 26 H 1.08995 * 109.47544 * 303.43502 * 3 2 1 27 27 H 1.09004 * 109.47174 * 63.43659 * 3 2 1 28 28 H 1.09001 * 109.47183 * 183.43695 * 3 2 1 29 29 H 0.96997 * 120.00510 * 179.97438 * 9 8 6 30 30 H 1.09005 * 108.98069 * 283.25147 * 16 14 4 31 31 H 1.08997 * 108.98150 * 41.96294 * 16 14 4 32 32 H 1.09004 * 108.93492 * 182.11411 * 17 16 14 33 33 H 1.09002 * 108.93816 * 300.80041 * 17 16 14 34 34 H 1.08999 * 109.60077 * 40.20074 * 18 17 16 35 35 H 1.09002 * 109.59971 * 160.51831 * 18 17 16 36 36 H 1.09007 * 108.69754 * 78.91182 * 20 19 18 37 37 H 1.08996 * 108.69863 * 196.88136 * 20 19 18 38 38 H 1.09000 * 108.87862 * 330.96964 * 21 14 4 39 39 H 1.08997 * 108.87923 * 89.43189 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 1 1.5912 -1.7130 -1.3049 6 6 1.6633 0.0701 -2.4752 7 1 2.3313 0.8295 -2.8541 8 6 0.4658 -0.1752 -3.1130 9 7 -0.2950 -1.1741 -2.7219 10 14 -0.0759 0.9112 -4.5328 11 1 0.9505 1.9564 -4.7759 12 1 -0.2383 0.0838 -5.7552 13 1 -1.3704 1.5565 -4.1963 14 6 3.5624 -0.8538 -1.1758 15 1 4.0068 0.1289 -1.0177 16 6 4.0921 -1.4532 -2.4941 17 6 5.5292 -1.2335 -2.6573 18 6 6.3513 -1.9013 -1.5378 19 8 6.3024 -1.0866 -0.3964 20 6 5.2966 -1.4085 0.5823 21 6 3.9343 -1.7659 -0.0361 22 1 -0.3634 -1.0258 -0.0625 23 1 -0.3633 0.4588 0.9195 24 1 -0.3634 0.5669 -0.8572 25 1 1.8933 -0.5139 0.8899 26 1 1.6273 1.9738 -0.8575 27 1 1.7278 1.9382 0.9192 28 1 3.1282 1.4431 -0.0616 29 1 -1.1376 -1.3465 -3.1703 30 1 3.8945 -2.5252 -2.5008 31 1 3.5659 -0.9922 -3.3299 32 1 5.8426 -1.6419 -3.6181 33 1 5.7264 -0.1615 -2.6477 34 1 5.9285 -2.8792 -1.3074 35 1 7.3852 -2.0174 -1.8630 36 1 5.6440 -2.2548 1.1751 37 1 5.1661 -0.5522 1.2439 38 1 3.1675 -1.6968 0.7355 39 1 3.9715 -2.7916 -0.4030 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259678104.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:52 Heat of formation + Delta-G solvation = -89.857505 kcal Electronic energy + Delta-G solvation = -17258.136418 eV Core-core repulsion = 14778.096608 eV Total energy + Delta-G solvation = -2480.039810 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.55615 -38.12299 -35.08441 -33.96870 -33.01437 -29.58449 -27.63846 -26.92818 -26.63002 -24.00166 -21.79683 -21.10909 -19.85706 -18.14625 -17.44369 -16.98594 -16.34298 -15.88364 -15.49080 -15.25305 -14.55549 -14.28681 -14.03450 -13.91145 -13.67027 -13.12695 -13.01654 -12.86075 -12.57529 -12.46366 -12.24808 -12.09570 -11.68359 -11.64877 -11.51549 -11.36756 -11.22848 -10.81157 -10.46719 -10.37112 -10.33448 -10.13998 -7.98661 -5.99034 1.37383 1.43097 1.50499 2.49013 3.03926 3.32274 3.91339 4.10335 4.19054 4.27011 4.34188 4.47223 4.56800 4.61901 4.64812 4.74138 4.81635 4.88226 4.96850 5.04782 5.18163 5.22189 5.29381 5.32915 5.36232 5.39302 5.43829 5.61087 5.68629 5.76639 5.76973 5.79384 5.93368 6.12315 6.14631 6.56805 6.58702 7.12099 7.61387 9.09324 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028616 B = 0.009992 C = 0.008391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.223927 B = 2801.578121 C = 3335.956181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.083 4.083 3 C -0.123 4.123 4 C 0.048 3.952 5 H 0.015 0.985 6 C -0.486 4.486 7 H 0.041 0.959 8 C 0.025 3.975 9 N -0.913 5.913 10 Si 0.922 3.078 11 H -0.271 1.271 12 H -0.288 1.288 13 H -0.287 1.287 14 C -0.065 4.065 15 H 0.053 0.947 16 C -0.106 4.106 17 C -0.141 4.141 18 C 0.070 3.930 19 O -0.403 6.403 20 C 0.068 3.932 21 C -0.148 4.148 22 H 0.029 0.971 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.253 0.747 30 H 0.037 0.963 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.450 -0.957 4.966 10.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.102 4.102 3 C -0.180 4.180 4 C 0.029 3.971 5 H 0.034 0.966 6 C -0.525 4.525 7 H 0.059 0.941 8 C -0.173 4.173 9 N -0.554 5.554 10 Si 0.750 3.250 11 H -0.196 1.196 12 H -0.215 1.215 13 H -0.213 1.213 14 C -0.084 4.084 15 H 0.072 0.928 16 C -0.144 4.144 17 C -0.179 4.179 18 C -0.007 4.007 19 O -0.322 6.322 20 C -0.008 4.008 21 C -0.185 4.185 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.117 0.883 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.401 -0.893 4.941 10.658 hybrid contribution -1.179 0.233 -1.204 1.701 sum 8.223 -0.660 3.737 9.056 Atomic orbital electron populations 1.21456 0.96717 0.99896 0.98431 1.21187 0.94822 0.96268 0.97906 1.21636 0.99940 0.96569 0.99827 1.18872 0.90561 0.95307 0.92368 0.96640 1.21156 1.02197 1.18256 1.10899 0.94050 1.25376 0.97510 0.95910 0.98522 1.70071 1.12866 1.29633 1.42833 0.86060 0.78181 0.79895 0.80848 1.19581 1.21475 1.21310 1.20813 0.96946 0.97449 0.93154 0.92849 1.20523 0.95552 0.99215 0.99065 1.21118 0.95691 1.01413 0.99694 1.22402 1.00250 0.93152 0.84879 1.87366 1.54721 1.58169 1.31941 1.22978 0.86661 1.01374 0.89748 1.22068 0.97527 0.99563 0.99346 0.95192 0.94612 0.94615 0.93170 0.94244 0.93493 0.93360 0.93745 0.94388 0.93045 0.90821 0.92765 0.92875 0.88255 0.91903 0.89294 0.90699 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.83 7.96 71.98 0.57 -4.25 16 2 C -0.08 -3.49 2.57 -10.79 -0.03 -3.52 16 3 C -0.12 -4.73 8.63 71.98 0.62 -4.11 16 4 C 0.05 2.21 1.24 -11.54 -0.01 2.20 16 5 H 0.02 0.83 7.36 -2.39 -0.02 0.81 16 6 C -0.49 -25.17 4.68 25.60 0.12 -25.05 16 7 H 0.04 2.19 7.78 -2.91 -0.02 2.17 16 8 C 0.02 1.33 4.20 84.65 0.36 1.69 16 9 N -0.91 -51.41 11.47 21.45 0.25 -51.17 16 10 Si 0.92 43.50 29.54 68.60 2.03 45.52 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 13 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 14 C -0.07 -2.55 1.36 -11.16 -0.02 -2.57 16 15 H 0.05 2.17 5.99 -2.39 -0.01 2.16 16 16 C -0.11 -4.09 4.64 28.93 0.13 -3.95 16 17 C -0.14 -4.42 5.47 28.90 0.16 -4.27 16 18 C 0.07 1.89 6.38 72.36 0.46 2.35 16 19 O -0.40 -12.18 10.17 -143.45 -1.46 -13.64 16 20 C 0.07 1.88 6.67 72.26 0.48 2.36 16 21 C -0.15 -4.82 4.75 30.10 0.14 -4.67 16 22 H 0.03 1.42 7.96 -2.39 -0.02 1.40 16 23 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.03 1.77 6.38 -2.39 -0.02 1.76 16 25 H 0.05 1.92 6.13 -2.39 -0.01 1.90 16 26 H 0.04 1.67 7.19 -2.39 -0.02 1.66 16 27 H 0.05 1.56 8.14 -2.38 -0.02 1.55 16 28 H 0.05 1.77 6.34 -2.39 -0.02 1.76 16 29 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 30 H 0.04 1.46 7.60 -2.38 -0.02 1.44 16 31 H 0.05 2.29 6.44 -2.39 -0.02 2.28 16 32 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.05 1.80 8.13 -2.39 -0.02 1.78 16 34 H 0.05 1.38 6.98 -2.39 -0.02 1.36 16 35 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.07 2.44 5.76 -2.39 -0.01 2.43 16 39 H 0.05 1.72 6.84 -2.39 -0.02 1.71 16 Total: -1.00 -56.89 285.08 4.80 -52.09 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 1.00 Total: 10.99 kcal Atomic # 6 Polarization: -46.79 SS G_CDS: 2.99 Total: -43.80 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: 0.25 Total: -51.17 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -1.46 Total: -13.64 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -56.89 4.80 -52.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259678104.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.770 kcal (2) G-P(sol) polarization free energy of solvation -56.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds