Wall clock time and date at job start Mon Mar 30 2020 03:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37099 * 119.99569 * 2 1 4 4 H 1.08005 * 119.99216 * 202.40702 * 3 2 1 5 5 C 1.38943 * 120.00467 * 22.40506 * 3 2 1 6 6 N 1.31412 * 119.99846 * 11.59265 * 5 3 2 7 7 Si 1.86799 * 120.00154 * 191.59319 * 5 3 2 8 8 H 1.48498 * 109.47126 * 90.00104 * 7 5 3 9 9 H 1.48498 * 109.47246 * 210.00280 * 7 5 3 10 10 H 1.48499 * 109.47050 * 330.00190 * 7 5 3 11 11 C 1.34776 * 120.00013 * 179.97438 * 2 1 3 12 12 O 1.21287 * 119.99881 * 180.02562 * 11 2 1 13 13 C 1.50698 * 119.99822 * 0.02562 * 11 2 1 14 14 C 1.53005 * 109.46837 * 180.02562 * 13 11 2 15 15 N 1.46904 * 109.46986 * 180.02562 * 14 13 11 16 16 C 1.48535 * 110.99891 * 52.59973 * 15 14 13 17 17 C 1.54938 * 103.22432 * 159.72474 * 16 15 14 18 18 C 1.54600 * 102.91952 * 322.58462 * 17 16 15 19 19 C 1.47898 * 110.99996 * 169.99794 * 15 14 13 20 20 H 1.08998 * 109.46986 * 272.15980 * 1 2 3 21 21 H 1.09004 * 109.46968 * 32.15967 * 1 2 3 22 22 H 1.09003 * 109.47105 * 152.16051 * 1 2 3 23 23 H 0.96998 * 119.99706 * 179.97438 * 6 5 3 24 24 H 1.08991 * 109.47405 * 59.99897 * 13 11 2 25 25 H 1.09001 * 109.47415 * 299.99807 * 13 11 2 26 26 H 1.08991 * 109.47259 * 60.00032 * 14 13 11 27 27 H 1.09001 * 109.46620 * 299.99876 * 14 13 11 28 28 H 1.09003 * 110.66674 * 278.15265 * 16 15 14 29 29 H 1.08994 * 110.66641 * 41.28894 * 16 15 14 30 30 H 1.08997 * 110.72723 * 204.22917 * 17 16 15 31 31 H 1.09001 * 110.72808 * 80.94113 * 17 16 15 32 32 H 1.09000 * 110.30700 * 263.04128 * 18 17 16 33 33 H 1.08995 * 110.31255 * 140.87710 * 18 17 16 34 34 H 1.09002 * 109.91558 * 333.50930 * 19 15 14 35 35 H 1.09000 * 109.91724 * 94.59840 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1693 1.2226 -0.3566 5 6 1.5344 2.3452 0.4586 6 7 0.3895 2.2707 1.0994 7 14 2.3336 4.0078 0.1643 8 1 1.8581 4.5637 -1.1280 9 1 1.9687 4.9344 1.2659 10 1 3.8092 3.8470 0.1210 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3854 -2.4723 0.0005 14 6 2.3797 -3.6352 0.0018 15 7 1.6452 -4.9074 0.0012 16 6 0.6509 -4.9474 -1.1015 17 6 0.3793 -6.4624 -1.2791 18 6 1.7723 -7.0925 -1.0495 19 6 2.5580 -6.0463 -0.2374 20 1 -0.3633 0.0387 1.0269 21 1 -0.3633 0.8700 -0.5470 22 1 -0.3633 -0.9087 -0.4799 23 1 -0.0403 3.0790 1.4199 24 1 0.7591 -2.5302 -0.8896 25 1 0.7584 -2.5298 0.8903 26 1 3.0056 -3.5771 0.8922 27 1 3.0070 -3.5778 -0.8878 28 1 -0.2616 -4.4240 -0.8159 29 1 1.0703 -4.5222 -2.0133 30 1 0.0214 -6.6747 -2.2866 31 1 -0.3321 -6.8169 -0.5332 32 1 2.2651 -7.2789 -2.0037 33 1 1.6797 -8.0193 -0.4833 34 1 3.4275 -5.7129 -0.8040 35 1 2.8763 -6.4728 0.7139 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259759499.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:04 Heat of formation + Delta-G solvation = -49.552292 kcal Electronic energy + Delta-G solvation = -15862.710159 eV Core-core repulsion = 13280.877771 eV Total energy + Delta-G solvation = -2581.832388 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.63864 -39.55777 -36.72899 -34.32143 -33.55923 -30.51819 -29.59432 -28.11397 -26.47166 -24.42844 -21.90743 -21.68265 -20.27377 -18.91218 -18.04034 -17.11775 -16.73039 -16.45575 -16.01147 -15.87120 -15.20091 -14.81049 -14.30566 -13.81290 -13.68926 -13.49384 -13.18088 -13.07300 -12.72850 -12.68374 -12.46197 -12.24156 -12.20334 -12.11788 -11.95309 -11.82180 -11.37893 -11.02810 -10.37820 -9.71409 -9.41625 -8.33818 -6.00076 1.36672 1.40014 1.52632 2.00646 2.26555 2.83210 3.08204 3.29473 3.74734 3.79884 4.06143 4.07716 4.17035 4.25966 4.39520 4.47095 4.65475 4.72057 4.78190 4.88292 4.97320 5.00658 5.02050 5.05688 5.10663 5.23613 5.35761 5.38551 5.43260 5.96207 6.00898 6.09022 6.47034 7.15174 7.45841 8.01452 8.67930 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.065139 B = 0.005431 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.748445 B = 5154.543603 C = 5424.908334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.464 5.464 3 C -0.347 4.347 4 H 0.070 0.930 5 C -0.002 4.002 6 N -0.897 5.897 7 Si 0.991 3.009 8 H -0.264 1.264 9 H -0.272 1.272 10 H -0.277 1.277 11 C 0.434 3.566 12 O -0.638 6.638 13 C -0.109 4.109 14 C 0.080 3.920 15 N -0.526 5.526 16 C 0.022 3.978 17 C -0.117 4.117 18 C -0.125 4.125 19 C 0.027 3.973 20 H 0.046 0.954 21 H 0.052 0.948 22 H 0.069 0.931 23 H 0.274 0.726 24 H 0.100 0.900 25 H 0.097 0.903 26 H 0.060 0.940 27 H 0.024 0.976 28 H 0.088 0.912 29 H 0.039 0.961 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.035 0.965 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.302 -13.934 -4.525 15.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.183 5.183 3 C -0.475 4.475 4 H 0.088 0.912 5 C -0.204 4.204 6 N -0.536 5.536 7 Si 0.815 3.185 8 H -0.189 1.189 9 H -0.197 1.197 10 H -0.202 1.202 11 C 0.224 3.776 12 O -0.526 6.526 13 C -0.150 4.150 14 C -0.049 4.049 15 N -0.251 5.251 16 C -0.106 4.106 17 C -0.155 4.155 18 C -0.163 4.163 19 C -0.101 4.101 20 H 0.065 0.935 21 H 0.071 0.929 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.118 0.882 25 H 0.115 0.885 26 H 0.079 0.921 27 H 0.043 0.957 28 H 0.107 0.893 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.054 0.946 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.140 -13.815 -3.920 14.946 hybrid contribution 0.950 1.306 -0.615 1.729 sum -3.190 -12.509 -4.536 13.683 Atomic orbital electron populations 1.21457 0.79161 1.00158 1.01238 1.43896 1.06911 1.04721 1.62731 1.19633 0.99219 0.85934 1.42759 0.91225 1.26102 0.97006 1.02883 0.94420 1.70075 1.17889 1.30448 1.35153 0.84970 0.78157 0.76906 0.78511 1.18913 1.19676 1.20215 1.21048 0.87929 0.86473 0.82144 1.90461 1.16291 1.88199 1.57683 1.21420 0.98627 0.90303 1.04610 1.21726 0.94529 0.88258 1.00360 1.64836 1.14301 1.01880 1.44086 1.23415 0.96421 0.98545 0.92204 1.22488 0.97230 0.92911 1.02874 1.22398 0.95548 0.98257 1.00114 1.22980 0.94839 0.91807 1.00432 0.93511 0.92865 0.91256 0.91648 0.88201 0.88482 0.92133 0.95737 0.89338 0.94230 0.89384 0.90197 0.90739 0.89549 0.94611 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.51 8.52 127.77 1.09 6.60 16 2 N -0.46 -24.78 3.02 -658.88 -1.99 -26.77 16 3 C -0.35 -20.37 9.29 84.04 0.78 -19.58 16 4 H 0.07 4.37 7.41 -2.91 -0.02 4.35 16 5 C 0.00 -0.13 5.11 84.92 0.43 0.30 16 6 N -0.90 -48.30 10.62 21.66 0.23 -48.07 16 7 Si 0.99 43.21 29.57 68.60 2.03 45.24 16 8 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 9 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 C 0.43 22.12 7.63 87.66 0.67 22.79 16 12 O -0.64 -37.58 15.67 -3.05 -0.05 -37.63 16 13 C -0.11 -4.08 3.88 29.85 0.12 -3.97 16 14 C 0.08 2.84 4.32 86.30 0.37 3.21 16 15 N -0.53 -14.86 5.40 -883.02 -4.76 -19.63 16 16 C 0.02 0.50 5.10 86.65 0.44 0.94 16 17 C -0.12 -2.01 7.06 31.80 0.22 -1.79 16 18 C -0.13 -2.16 6.93 31.47 0.22 -1.94 16 19 C 0.03 0.64 6.69 86.45 0.58 1.22 16 20 H 0.05 2.18 7.54 -2.39 -0.02 2.17 16 21 H 0.05 2.51 7.06 -2.39 -0.02 2.49 16 22 H 0.07 2.46 6.36 -2.39 -0.02 2.44 16 23 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 24 H 0.10 3.22 6.06 -2.39 -0.01 3.21 16 25 H 0.10 3.44 8.11 -2.39 -0.02 3.42 16 26 H 0.06 2.37 8.10 -2.39 -0.02 2.35 16 27 H 0.02 0.93 7.77 -2.39 -0.02 0.91 16 28 H 0.09 1.95 7.66 -2.39 -0.02 1.94 16 29 H 0.04 0.96 8.00 -2.39 -0.02 0.95 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.04 0.90 7.57 -2.39 -0.02 0.89 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -68.22 280.78 1.44 -66.78 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.05 Total: 12.29 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 4.92 Total: 7.79 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -6.52 Total: -94.46 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -0.05 Total: -37.63 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -68.22 1.44 -66.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259759499.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.227 kcal (2) G-P(sol) polarization free energy of solvation -68.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds