Wall clock time and date at job start Mon Mar 30 2020 02:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37105 * 119.99751 * 2 1 4 4 H 1.08001 * 119.99224 * 159.79465 * 3 2 1 5 5 C 1.38947 * 120.00067 * 339.79412 * 3 2 1 6 6 N 1.31409 * 119.99988 * 343.56762 * 5 3 2 7 7 Si 1.86799 * 119.99866 * 163.56113 * 5 3 2 8 8 H 1.48492 * 109.47630 * 265.02646 * 7 5 3 9 9 H 1.48500 * 109.46694 * 145.02343 * 7 5 3 10 10 H 1.48499 * 109.46901 * 25.03154 * 7 5 3 11 11 C 1.34774 * 119.99930 * 179.97438 * 2 1 3 12 12 O 1.21295 * 119.99761 * 179.97438 * 11 2 1 13 13 C 1.50705 * 120.00215 * 0.02562 * 11 2 1 14 14 C 1.52997 * 109.46852 * 173.98200 * 13 11 2 15 15 H 1.09005 * 109.88380 * 52.99911 * 14 13 11 16 16 C 1.54321 * 109.89172 * 291.96405 * 14 13 11 17 17 C 1.55395 * 102.89961 * 218.41418 * 16 14 13 18 18 C 1.54906 * 101.74443 * 35.47830 * 17 16 14 19 19 N 1.47447 * 109.88676 * 174.02563 * 14 13 11 20 20 C 1.46903 * 111.00004 * 356.15281 * 19 14 13 21 21 H 1.08995 * 109.47144 * 85.68033 * 1 2 3 22 22 H 1.09001 * 109.46731 * 205.68101 * 1 2 3 23 23 H 1.08993 * 109.47198 * 325.67577 * 1 2 3 24 24 H 0.96995 * 119.99966 * 180.02562 * 6 5 3 25 25 H 1.08998 * 109.46765 * 293.97875 * 13 11 2 26 26 H 1.08993 * 109.47029 * 53.97679 * 13 11 2 27 27 H 1.09002 * 110.69960 * 336.69343 * 16 14 13 28 28 H 1.08998 * 110.70460 * 99.92918 * 16 14 13 29 29 H 1.09010 * 110.86878 * 277.38714 * 17 16 14 30 30 H 1.08996 * 111.05941 * 153.65016 * 17 16 14 31 31 H 1.09001 * 110.37087 * 204.19000 * 18 17 16 32 32 H 1.09000 * 110.46693 * 81.89987 * 18 17 16 33 33 H 1.09002 * 109.47550 * 56.99591 * 20 19 14 34 34 H 1.08990 * 109.47132 * 177.00336 * 20 19 14 35 35 H 1.09003 * 109.46319 * 296.99908 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1807 1.2161 0.3231 5 6 1.5199 2.3537 -0.4156 6 7 0.4018 2.2870 -1.1028 7 14 2.2614 4.0164 0.0026 8 1 1.6351 4.5399 1.2431 9 1 2.0146 4.9634 -1.1143 10 1 3.7241 3.8676 0.2113 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1672 0.0001 13 6 1.3854 -2.4724 0.0005 14 6 2.3729 -3.6312 -0.1501 15 1 3.1541 -3.5533 0.6061 16 6 3.0018 -3.6055 -1.5591 17 6 3.0889 -5.1126 -1.9277 18 6 1.8029 -5.6728 -1.2705 19 7 1.6637 -4.9161 -0.0079 20 6 0.2488 -4.7026 0.3245 21 1 -0.3633 0.0774 -1.0247 22 1 -0.3633 -0.9262 0.4454 23 1 -0.3633 0.8486 0.5794 24 1 -0.0383 3.1011 -1.3932 25 1 0.8417 -2.5779 0.9393 26 1 0.6807 -2.4850 -0.8308 27 1 2.3567 -3.0747 -2.2593 28 1 3.9940 -3.1552 -1.5301 29 1 3.9794 -5.5676 -1.4937 30 1 3.0683 -5.2533 -3.0083 31 1 1.9149 -6.7373 -1.0645 32 1 0.9399 -5.5001 -1.9136 33 1 -0.2147 -4.0813 -0.4419 34 1 -0.2625 -5.6640 0.3712 35 1 0.1740 -4.2039 1.2908 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259814656.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:38 Heat of formation + Delta-G solvation = -19.441326 kcal Electronic energy + Delta-G solvation = -16367.205119 eV Core-core repulsion = 13786.678440 eV Total energy + Delta-G solvation = -2580.526678 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.53839 -37.80635 -34.64555 -32.11571 -31.59261 -30.75854 -26.68033 -25.70061 -25.40459 -23.94240 -21.01702 -19.98400 -18.29051 -16.89267 -16.45170 -15.56341 -15.30047 -14.52248 -14.46778 -13.97579 -13.71243 -13.11395 -12.99651 -12.38300 -12.14325 -11.90465 -11.51173 -11.38472 -11.20826 -11.07222 -11.05935 -10.88841 -10.76613 -10.42059 -10.35602 -10.32491 -10.08847 -9.02414 -8.35920 -8.05221 -7.66853 -6.30644 -3.83630 3.16674 3.26069 3.32054 3.91581 4.11923 4.23454 4.86054 4.93595 5.01088 5.15094 5.23057 5.42808 5.53866 5.58035 5.70905 5.78342 5.82685 5.93479 5.94705 6.08472 6.15890 6.23157 6.33685 6.42010 6.50066 6.79926 6.85485 7.19691 7.21559 7.26070 7.59145 8.14993 8.50908 9.21667 9.46357 10.02386 10.73460 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.049439 B = 0.006782 C = 0.006386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.215537 B = 4127.703406 C = 4383.707467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.449 5.449 3 C -0.306 4.306 4 H 0.100 0.900 5 C 0.029 3.971 6 N -0.882 5.882 7 Si 0.924 3.076 8 H -0.279 1.279 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.449 3.551 12 O -0.588 6.588 13 C -0.145 4.145 14 C 0.091 3.909 15 H 0.094 0.906 16 C -0.126 4.126 17 C -0.132 4.132 18 C 0.040 3.960 19 N -0.533 5.533 20 C 0.015 3.985 21 H 0.059 0.941 22 H 0.027 0.973 23 H 0.064 0.936 24 H 0.266 0.734 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.033 0.967 34 H 0.060 0.940 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.554 -10.867 -0.135 11.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.168 5.168 3 C -0.434 4.434 4 H 0.118 0.882 5 C -0.174 4.174 6 N -0.522 5.522 7 Si 0.751 3.249 8 H -0.205 1.205 9 H -0.210 1.210 10 H -0.193 1.193 11 C 0.236 3.764 12 O -0.473 6.473 13 C -0.187 4.187 14 C -0.017 4.017 15 H 0.112 0.888 16 C -0.164 4.164 17 C -0.170 4.170 18 C -0.087 4.087 19 N -0.257 5.257 20 C -0.134 4.134 21 H 0.077 0.923 22 H 0.045 0.955 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.902 -10.996 0.198 11.161 hybrid contribution -0.473 1.462 -0.563 1.636 sum -2.374 -9.534 -0.365 9.832 Atomic orbital electron populations 1.21472 0.81356 0.98379 1.01930 1.43623 1.05400 1.04929 1.62875 1.19688 0.98491 0.83421 1.41844 0.88248 1.25298 0.96651 0.99960 0.95471 1.70025 1.18876 1.28942 1.34346 0.85939 0.79610 0.81392 0.77968 1.20467 1.21019 1.19323 1.19943 0.88060 0.84684 0.83695 1.90499 1.13903 1.87142 1.55757 1.22157 0.99150 0.94757 1.02587 1.22152 0.95603 0.85746 0.98157 0.88774 1.22794 1.02677 0.95063 0.95913 1.22770 0.97847 0.96484 0.99917 1.23044 0.97236 0.98486 0.89970 1.63853 1.12166 1.17674 1.31960 1.22591 0.88945 1.00727 1.01123 0.92282 0.95483 0.91756 0.92356 0.89905 0.90665 0.91890 0.89840 0.90917 0.91271 0.90720 0.93896 0.94828 0.92155 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.54 8.47 59.85 0.51 3.05 16 2 N -0.45 -11.66 3.02 -122.19 -0.37 -12.03 16 3 C -0.31 -8.67 9.31 -14.93 -0.14 -8.81 16 4 H 0.10 2.95 7.39 -52.49 -0.39 2.56 16 5 C 0.03 0.78 5.03 -17.47 -0.09 0.69 16 6 N -0.88 -23.80 10.75 55.50 0.60 -23.20 16 7 Si 0.92 20.97 29.58 -169.99 -5.03 15.94 16 8 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 C 0.45 10.95 7.35 -10.98 -0.08 10.87 16 12 O -0.59 -16.11 14.74 5.54 0.08 -16.02 16 13 C -0.15 -2.72 2.23 -27.88 -0.06 -2.78 16 14 C 0.09 1.60 3.07 -66.72 -0.20 1.39 16 15 H 0.09 1.84 7.81 -51.93 -0.41 1.43 16 16 C -0.13 -2.13 5.62 -24.77 -0.14 -2.27 16 17 C -0.13 -1.75 7.08 -24.45 -0.17 -1.92 16 18 C 0.04 0.52 6.73 -2.30 -0.02 0.50 16 19 N -0.53 -7.93 5.44 -231.56 -1.26 -9.19 16 20 C 0.01 0.19 8.23 60.07 0.49 0.68 16 21 H 0.06 1.39 7.45 -51.93 -0.39 1.00 16 22 H 0.03 0.50 6.43 -51.93 -0.33 0.17 16 23 H 0.06 1.52 7.19 -51.93 -0.37 1.14 16 24 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 25 H 0.08 1.42 5.86 -51.93 -0.30 1.12 16 26 H 0.07 1.35 6.67 -51.93 -0.35 1.00 16 27 H 0.06 1.11 7.75 -51.93 -0.40 0.71 16 28 H 0.08 1.55 7.86 -51.93 -0.41 1.14 16 29 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.04 0.53 7.81 -51.93 -0.41 0.12 16 33 H 0.03 0.44 6.49 -51.93 -0.34 0.10 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.91 6.79 -51.93 -0.35 0.56 16 LS Contribution 274.36 15.07 4.13 4.13 Total: -1.00 -30.37 274.36 -7.02 -37.39 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -5.27 Total: 1.57 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 0.10 Total: 1.41 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: -1.03 Total: -44.43 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.08 Total: -16.02 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.37 -7.02 -37.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259814656.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.948 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds