Wall clock time and date at job start Mon Mar 30 2020 02:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37105 * 119.99751 * 2 1 4 4 H 1.08001 * 119.99224 * 159.79465 * 3 2 1 5 5 C 1.38947 * 120.00067 * 339.79412 * 3 2 1 6 6 N 1.31409 * 119.99988 * 343.56762 * 5 3 2 7 7 Si 1.86799 * 119.99866 * 163.56113 * 5 3 2 8 8 H 1.48492 * 109.47630 * 265.02646 * 7 5 3 9 9 H 1.48500 * 109.46694 * 145.02343 * 7 5 3 10 10 H 1.48499 * 109.46901 * 25.03154 * 7 5 3 11 11 C 1.34774 * 119.99930 * 179.97438 * 2 1 3 12 12 O 1.21295 * 119.99761 * 179.97438 * 11 2 1 13 13 C 1.50705 * 120.00215 * 0.02562 * 11 2 1 14 14 C 1.52997 * 109.46852 * 173.98200 * 13 11 2 15 15 H 1.09005 * 109.88380 * 52.99911 * 14 13 11 16 16 C 1.54321 * 109.89172 * 291.96405 * 14 13 11 17 17 C 1.55395 * 102.89961 * 218.41418 * 16 14 13 18 18 C 1.54906 * 101.74443 * 35.47830 * 17 16 14 19 19 N 1.47447 * 109.88676 * 174.02563 * 14 13 11 20 20 C 1.46903 * 111.00004 * 356.15281 * 19 14 13 21 21 H 1.08995 * 109.47144 * 85.68033 * 1 2 3 22 22 H 1.09001 * 109.46731 * 205.68101 * 1 2 3 23 23 H 1.08993 * 109.47198 * 325.67577 * 1 2 3 24 24 H 0.96995 * 119.99966 * 180.02562 * 6 5 3 25 25 H 1.08998 * 109.46765 * 293.97875 * 13 11 2 26 26 H 1.08993 * 109.47029 * 53.97679 * 13 11 2 27 27 H 1.09002 * 110.69960 * 336.69343 * 16 14 13 28 28 H 1.08998 * 110.70460 * 99.92918 * 16 14 13 29 29 H 1.09010 * 110.86878 * 277.38714 * 17 16 14 30 30 H 1.08996 * 111.05941 * 153.65016 * 17 16 14 31 31 H 1.09001 * 110.37087 * 204.19000 * 18 17 16 32 32 H 1.09000 * 110.46693 * 81.89987 * 18 17 16 33 33 H 1.09002 * 109.47550 * 56.99591 * 20 19 14 34 34 H 1.08990 * 109.47132 * 177.00336 * 20 19 14 35 35 H 1.09003 * 109.46319 * 296.99908 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1807 1.2161 0.3231 5 6 1.5199 2.3537 -0.4156 6 7 0.4018 2.2870 -1.1028 7 14 2.2614 4.0164 0.0026 8 1 1.6351 4.5399 1.2431 9 1 2.0146 4.9634 -1.1143 10 1 3.7241 3.8676 0.2113 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1672 0.0001 13 6 1.3854 -2.4724 0.0005 14 6 2.3729 -3.6312 -0.1501 15 1 3.1541 -3.5533 0.6061 16 6 3.0018 -3.6055 -1.5591 17 6 3.0889 -5.1126 -1.9277 18 6 1.8029 -5.6728 -1.2705 19 7 1.6637 -4.9161 -0.0079 20 6 0.2488 -4.7026 0.3245 21 1 -0.3633 0.0774 -1.0247 22 1 -0.3633 -0.9262 0.4454 23 1 -0.3633 0.8486 0.5794 24 1 -0.0383 3.1011 -1.3932 25 1 0.8417 -2.5779 0.9393 26 1 0.6807 -2.4850 -0.8308 27 1 2.3567 -3.0747 -2.2593 28 1 3.9940 -3.1552 -1.5301 29 1 3.9794 -5.5676 -1.4937 30 1 3.0683 -5.2533 -3.0083 31 1 1.9149 -6.7373 -1.0645 32 1 0.9399 -5.5001 -1.9136 33 1 -0.2147 -4.0813 -0.4419 34 1 -0.2625 -5.6640 0.3712 35 1 0.1740 -4.2039 1.2908 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259814656.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:37 Heat of formation + Delta-G solvation = -40.512932 kcal Electronic energy + Delta-G solvation = -16368.118852 eV Core-core repulsion = 13786.678440 eV Total energy + Delta-G solvation = -2581.440412 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.04327 -39.46457 -36.65256 -33.79960 -33.07907 -32.23177 -28.47755 -27.35616 -26.49168 -25.78541 -22.20457 -21.52211 -19.88261 -18.91416 -18.12361 -17.18070 -16.56253 -16.26949 -16.13672 -15.75896 -15.05691 -14.55289 -14.41070 -13.81818 -13.66732 -13.48309 -13.23036 -13.13178 -12.93772 -12.65378 -12.40470 -12.23612 -12.20684 -12.14030 -11.93630 -11.61712 -11.59182 -11.04078 -10.30827 -9.71316 -9.23490 -8.35338 -5.97412 1.35276 1.39598 1.52283 2.02123 2.26737 2.91198 3.06668 3.24263 3.71679 3.80242 3.88548 4.09373 4.28356 4.38261 4.39952 4.55430 4.60590 4.64746 4.70577 4.75233 4.97215 5.00077 5.06156 5.08007 5.13866 5.23760 5.33655 5.41226 5.44418 5.99920 6.07928 6.17544 6.47393 7.16484 7.47592 8.04039 8.66906 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.049439 B = 0.006782 C = 0.006386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.215537 B = 4127.703406 C = 4383.707467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.467 5.467 3 C -0.347 4.347 4 H 0.071 0.929 5 C -0.003 4.003 6 N -0.896 5.896 7 Si 0.988 3.012 8 H -0.265 1.265 9 H -0.274 1.274 10 H -0.276 1.276 11 C 0.439 3.561 12 O -0.627 6.627 13 C -0.129 4.129 14 C 0.096 3.904 15 H 0.066 0.934 16 C -0.130 4.130 17 C -0.123 4.123 18 C 0.041 3.959 19 N -0.538 5.538 20 C 0.010 3.990 21 H 0.046 0.954 22 H 0.069 0.931 23 H 0.049 0.951 24 H 0.273 0.727 25 H 0.104 0.896 26 H 0.089 0.911 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.034 0.966 34 H 0.085 0.915 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.958 -11.916 -0.249 12.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.186 5.186 3 C -0.475 4.475 4 H 0.089 0.911 5 C -0.204 4.204 6 N -0.534 5.534 7 Si 0.812 3.188 8 H -0.190 1.190 9 H -0.199 1.199 10 H -0.201 1.201 11 C 0.228 3.772 12 O -0.515 6.515 13 C -0.169 4.169 14 C -0.013 4.013 15 H 0.084 0.916 16 C -0.169 4.169 17 C -0.160 4.160 18 C -0.086 4.086 19 N -0.262 5.262 20 C -0.138 4.138 21 H 0.065 0.935 22 H 0.088 0.912 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.122 0.878 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.103 0.897 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.344 -12.063 0.081 12.518 hybrid contribution -0.033 1.753 -0.547 1.836 sum -3.377 -10.310 -0.467 10.859 Atomic orbital electron populations 1.21423 0.79459 0.99941 1.01267 1.43905 1.06719 1.04831 1.63140 1.19624 0.98148 0.85474 1.44230 0.91129 1.26049 0.97026 1.02747 0.94616 1.70089 1.19332 1.30166 1.33862 0.85001 0.78342 0.77094 0.78404 1.18990 1.19868 1.20119 1.20950 0.88023 0.86161 0.82057 1.90467 1.15973 1.87998 1.57048 1.22093 0.99006 0.91715 1.04132 1.21949 0.95016 0.86832 0.97481 0.91613 1.22735 1.00734 0.97719 0.95708 1.22759 0.98616 0.93273 1.01393 1.23160 0.97121 0.99249 0.89102 1.63848 1.13338 1.15761 1.33255 1.22691 0.87750 1.02299 1.01039 0.93500 0.91249 0.93227 0.91711 0.87810 0.89248 0.92994 0.92714 0.90498 0.89243 0.88461 0.92778 0.94733 0.89669 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.44 8.47 127.77 1.08 6.52 16 2 N -0.47 -24.64 3.02 -658.88 -1.99 -26.63 16 3 C -0.35 -20.20 9.31 84.04 0.78 -19.42 16 4 H 0.07 4.42 7.39 -2.91 -0.02 4.39 16 5 C 0.00 -0.14 5.03 84.93 0.43 0.29 16 6 N -0.90 -48.12 10.75 21.66 0.23 -47.88 16 7 Si 0.99 43.11 29.58 68.60 2.03 45.14 16 8 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 9 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 C 0.44 21.85 7.35 87.66 0.64 22.50 16 12 O -0.63 -35.91 14.74 -3.08 -0.05 -35.96 16 13 C -0.13 -4.69 2.23 29.85 0.07 -4.63 16 14 C 0.10 3.31 3.07 45.26 0.14 3.45 16 15 H 0.07 2.64 7.81 -2.38 -0.02 2.62 16 16 C -0.13 -4.42 5.62 31.87 0.18 -4.24 16 17 C -0.12 -3.00 7.08 32.07 0.23 -2.78 16 18 C 0.04 0.92 6.73 86.77 0.58 1.50 16 19 N -0.54 -14.73 5.44 -886.51 -4.83 -19.56 16 20 C 0.01 0.23 8.23 127.69 1.05 1.28 16 21 H 0.05 2.18 7.45 -2.39 -0.02 2.16 16 22 H 0.07 2.44 6.43 -2.39 -0.02 2.42 16 23 H 0.05 2.32 7.19 -2.39 -0.02 2.30 16 24 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 25 H 0.10 3.35 5.86 -2.39 -0.01 3.34 16 26 H 0.09 3.03 6.67 -2.39 -0.02 3.02 16 27 H 0.05 1.84 7.75 -2.39 -0.02 1.82 16 28 H 0.05 2.13 7.86 -2.39 -0.02 2.11 16 29 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.12 7.81 -2.39 -0.02 1.10 16 33 H 0.03 0.78 6.49 -2.39 -0.02 0.76 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 1.60 6.79 -2.39 -0.02 1.58 16 Total: -1.00 -67.15 274.36 1.65 -65.50 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 1.06 Total: 14.91 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 5.18 Total: 4.47 kcal Atomic # 7 Polarization: -87.49 SS G_CDS: -6.58 Total: -94.07 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.05 Total: -35.96 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -67.15 1.65 -65.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259814656.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.991 kcal (2) G-P(sol) polarization free energy of solvation -67.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds