Wall clock time and date at job start Mon Mar 30 2020 03:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 C 1.53008 * 109.47002 * 240.00081 * 2 1 3 5 5 C 1.53001 * 109.47052 * 120.00214 * 2 1 3 6 6 H 1.08997 * 109.47124 * 179.97438 * 5 2 1 7 7 C 1.52999 * 109.47006 * 60.00111 * 5 2 1 8 8 C 1.53001 * 109.47006 * 180.02562 * 7 5 2 9 9 C 1.53003 * 109.47376 * 59.99492 * 8 7 5 10 10 H 1.08997 * 109.47258 * 180.02562 * 9 8 7 11 11 O 1.42903 * 109.46459 * 60.00190 * 9 8 7 12 12 C 1.52999 * 109.47142 * 300.00420 * 9 8 7 13 13 H 1.08997 * 109.46819 * 299.99607 * 12 9 8 14 14 C 1.50701 * 109.46934 * 179.97438 * 12 9 8 15 15 H 1.07994 * 120.00170 * 239.99766 * 14 12 9 16 16 C 1.37881 * 119.99779 * 60.00131 * 14 12 9 17 17 N 1.31510 * 120.00009 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99874 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47445 * 60.00085 * 18 16 14 20 20 H 1.48507 * 109.47094 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.47199 * 299.99691 * 18 16 14 22 22 C 1.52995 * 109.47163 * 299.99603 * 5 2 1 23 23 H 1.08999 * 109.46874 * 300.00131 * 1 2 3 24 24 H 1.08997 * 109.47213 * 59.99740 * 1 2 3 25 25 H 1.08999 * 109.47165 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46599 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47286 * 300.00215 * 3 2 1 28 28 H 1.08997 * 109.46848 * 60.00117 * 3 2 1 29 29 H 1.08999 * 109.47241 * 300.00051 * 4 2 1 30 30 H 1.08997 * 109.46991 * 60.00043 * 4 2 1 31 31 H 1.09001 * 109.47002 * 179.97438 * 4 2 1 32 32 H 1.08999 * 109.47676 * 59.99882 * 7 5 2 33 33 H 1.09001 * 109.47293 * 299.99741 * 7 5 2 34 34 H 1.08997 * 109.47124 * 299.99555 * 8 7 5 35 35 H 1.08999 * 109.47164 * 179.97438 * 8 7 5 36 36 H 0.96700 * 114.00311 * 60.00313 * 11 9 8 37 37 H 0.97002 * 120.00232 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.47376 * 300.00232 * 22 5 2 39 39 H 1.09001 * 109.46813 * 60.00457 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7217 1.2490 7 6 1.5300 -2.1638 1.2491 8 6 2.0395 -2.8849 2.4987 9 6 1.5290 -2.1635 3.7477 10 1 1.8924 -2.6770 4.6378 11 8 0.1000 -2.1635 3.7470 12 6 2.0390 -0.7210 3.7477 13 1 3.1290 -0.7211 3.7481 14 6 1.5357 -0.0103 4.9776 15 1 0.9150 0.8677 4.8778 16 6 1.8679 -0.4811 6.2302 17 7 2.6235 -1.5506 6.3517 18 14 1.2447 0.4002 7.7547 19 1 -0.2403 0.4008 7.7539 20 1 1.7392 -0.2992 8.9678 21 1 1.7403 1.8002 7.7546 22 6 1.5301 -0.0001 2.4984 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2494 30 1 1.6767 -0.2074 -2.1393 31 1 3.1300 -0.7209 -1.2496 32 1 1.8933 -2.6776 0.3591 33 1 0.4400 -2.1638 1.2491 34 1 3.1294 -2.8850 2.4991 35 1 1.6758 -3.9124 2.4989 36 1 -0.2933 -3.0469 3.7470 37 1 2.8575 -1.8816 7.2329 38 1 1.8934 1.0276 2.4985 39 1 0.4401 -0.0001 2.4985 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259856183.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:56 Heat of formation + Delta-G solvation = -86.113688 kcal Electronic energy + Delta-G solvation = -17217.134363 eV Core-core repulsion = 14737.256898 eV Total energy + Delta-G solvation = -2479.877465 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.15902 -36.28186 -33.17673 -32.33428 -29.97479 -27.85931 -27.00221 -26.94421 -24.46478 -21.95173 -21.00425 -18.83800 -17.81153 -16.17601 -15.67026 -14.75551 -14.35395 -14.07825 -13.90413 -13.63642 -13.36353 -12.69944 -12.43483 -11.99166 -11.67918 -11.67456 -11.36578 -11.33328 -11.19679 -10.83084 -10.76795 -10.67279 -10.51052 -10.40237 -10.07650 -9.81094 -9.68056 -9.30579 -9.00920 -8.53624 -8.46456 -8.11730 -5.89650 -3.91964 3.38693 3.41919 3.46213 4.52536 5.11920 5.19244 5.23854 5.40295 5.59978 5.71974 5.74238 5.86649 5.90105 5.96516 6.07083 6.09103 6.19508 6.21485 6.25136 6.40764 6.46064 6.49201 6.55403 6.65200 6.69027 6.71588 6.79983 6.89781 6.99622 7.11485 7.30301 7.50353 7.78666 7.88928 8.13040 8.51483 8.99333 9.08442 9.70353 11.16362 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.036085 B = 0.008558 C = 0.007758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.751082 B = 3271.022246 C = 3608.334106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 C -0.141 4.141 4 C -0.140 4.140 5 C -0.074 4.074 6 H 0.057 0.943 7 C -0.105 4.105 8 C -0.154 4.154 9 C 0.106 3.894 10 H 0.083 0.917 11 O -0.554 6.554 12 C 0.057 3.943 13 H 0.032 0.968 14 C -0.490 4.490 15 H 0.052 0.948 16 C 0.058 3.942 17 N -0.901 5.901 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.279 1.279 22 C -0.099 4.099 23 H 0.062 0.938 24 H 0.041 0.959 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.041 0.959 36 H 0.343 0.657 37 H 0.258 0.742 38 H 0.044 0.956 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.590 -0.619 -11.341 11.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.065 4.065 3 C -0.198 4.198 4 C -0.198 4.198 5 C -0.093 4.093 6 H 0.075 0.925 7 C -0.142 4.142 8 C -0.192 4.192 9 C 0.047 3.953 10 H 0.101 0.899 11 O -0.356 6.356 12 C 0.039 3.961 13 H 0.050 0.950 14 C -0.528 4.528 15 H 0.071 0.929 16 C -0.141 4.141 17 N -0.542 5.542 18 Si 0.719 3.281 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.205 1.205 22 C -0.137 4.137 23 H 0.081 0.919 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.186 0.814 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.399 -0.053 -11.199 11.286 hybrid contribution -0.280 -0.310 0.882 0.976 sum -1.679 -0.363 -10.316 10.458 Atomic orbital electron populations 1.21932 0.95006 1.01681 1.01133 1.20548 0.95567 0.95175 0.95204 1.21906 1.00612 0.95976 1.01345 1.21920 1.00573 1.00293 0.96979 1.21195 0.99092 0.94668 0.94334 0.92482 1.21528 1.00969 0.95286 0.96403 1.22383 1.00755 0.98102 0.97998 1.22114 0.79048 0.99825 0.94268 0.89946 1.86622 1.21385 1.30193 1.97384 1.18646 0.95396 0.89992 0.92099 0.95010 1.21062 1.30116 1.11242 0.90362 0.92930 1.24919 0.95175 0.95130 0.98871 1.69819 1.37840 1.23312 1.23180 0.86681 0.79254 0.79661 0.82488 1.20377 1.21514 1.20494 1.21647 1.00704 0.97728 0.93588 0.91908 0.93973 0.92644 0.93115 0.93672 0.91925 0.92626 0.93554 0.93149 0.93830 0.91719 0.92381 0.93979 0.81450 0.93184 0.93714 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 7.77 37.16 0.29 -1.75 16 2 C -0.06 -0.96 0.57 -154.50 -0.09 -1.05 16 3 C -0.14 -2.00 8.12 37.16 0.30 -1.70 16 4 C -0.14 -1.80 8.12 37.16 0.30 -1.50 16 5 C -0.07 -1.31 1.55 -90.62 -0.14 -1.45 16 6 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 7 C -0.10 -1.80 4.35 -26.73 -0.12 -1.91 16 8 C -0.15 -2.96 5.64 -26.73 -0.15 -3.11 16 9 C 0.11 2.47 2.99 -26.73 -0.08 2.39 16 10 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 11 O -0.55 -12.54 11.59 -35.23 -0.41 -12.95 16 12 C 0.06 1.43 1.94 -91.80 -0.18 1.25 16 13 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 14 C -0.49 -13.77 8.21 -34.44 -0.28 -14.05 16 15 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 17 N -0.90 -25.98 11.32 55.43 0.63 -25.35 16 18 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 C -0.10 -2.10 3.57 -26.76 -0.10 -2.20 16 23 H 0.06 1.00 6.43 -51.93 -0.33 0.67 16 24 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.80 6.43 -51.93 -0.33 0.47 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.95 6.43 -51.93 -0.33 0.62 16 29 H 0.05 0.70 6.43 -51.93 -0.33 0.37 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.04 0.67 6.43 -51.93 -0.33 0.33 16 33 H 0.06 1.14 5.97 -51.93 -0.31 0.83 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.34 6.23 9.08 45.56 0.41 6.65 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.04 0.94 6.43 -51.93 -0.33 0.61 16 39 H 0.06 1.35 5.97 -51.93 -0.31 1.04 16 LS Contribution 286.89 15.07 4.32 4.32 Total: -1.00 -29.10 286.89 -6.68 -35.78 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -5.87 Total: 4.74 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: -0.33 Total: -23.52 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.63 Total: -25.35 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.41 Total: -12.95 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.10 -6.68 -35.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259856183.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.331 kcal (2) G-P(sol) polarization free energy of solvation -29.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds