Wall clock time and date at job start Mon Mar 30 2020 03:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 C 1.53008 * 109.47002 * 240.00081 * 2 1 3 5 5 C 1.53001 * 109.47052 * 120.00214 * 2 1 3 6 6 H 1.08997 * 109.47124 * 179.97438 * 5 2 1 7 7 C 1.52999 * 109.47006 * 60.00111 * 5 2 1 8 8 C 1.53001 * 109.47006 * 180.02562 * 7 5 2 9 9 C 1.53003 * 109.47376 * 59.99492 * 8 7 5 10 10 H 1.08997 * 109.47258 * 180.02562 * 9 8 7 11 11 O 1.42903 * 109.46459 * 60.00190 * 9 8 7 12 12 C 1.52999 * 109.47142 * 300.00420 * 9 8 7 13 13 H 1.08997 * 109.46819 * 299.99607 * 12 9 8 14 14 C 1.50701 * 109.46934 * 179.97438 * 12 9 8 15 15 H 1.07994 * 120.00170 * 239.99766 * 14 12 9 16 16 C 1.37881 * 119.99779 * 60.00131 * 14 12 9 17 17 N 1.31510 * 120.00009 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99874 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47445 * 60.00085 * 18 16 14 20 20 H 1.48507 * 109.47094 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.47199 * 299.99691 * 18 16 14 22 22 C 1.52995 * 109.47163 * 299.99603 * 5 2 1 23 23 H 1.08999 * 109.46874 * 300.00131 * 1 2 3 24 24 H 1.08997 * 109.47213 * 59.99740 * 1 2 3 25 25 H 1.08999 * 109.47165 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46599 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47286 * 300.00215 * 3 2 1 28 28 H 1.08997 * 109.46848 * 60.00117 * 3 2 1 29 29 H 1.08999 * 109.47241 * 300.00051 * 4 2 1 30 30 H 1.08997 * 109.46991 * 60.00043 * 4 2 1 31 31 H 1.09001 * 109.47002 * 179.97438 * 4 2 1 32 32 H 1.08999 * 109.47676 * 59.99882 * 7 5 2 33 33 H 1.09001 * 109.47293 * 299.99741 * 7 5 2 34 34 H 1.08997 * 109.47124 * 299.99555 * 8 7 5 35 35 H 1.08999 * 109.47164 * 179.97438 * 8 7 5 36 36 H 0.96700 * 114.00311 * 60.00313 * 11 9 8 37 37 H 0.97002 * 120.00232 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.47376 * 300.00232 * 22 5 2 39 39 H 1.09001 * 109.46813 * 60.00457 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7217 1.2490 7 6 1.5300 -2.1638 1.2491 8 6 2.0395 -2.8849 2.4987 9 6 1.5290 -2.1635 3.7477 10 1 1.8924 -2.6770 4.6378 11 8 0.1000 -2.1635 3.7470 12 6 2.0390 -0.7210 3.7477 13 1 3.1290 -0.7211 3.7481 14 6 1.5357 -0.0103 4.9776 15 1 0.9150 0.8677 4.8778 16 6 1.8679 -0.4811 6.2302 17 7 2.6235 -1.5506 6.3517 18 14 1.2447 0.4002 7.7547 19 1 -0.2403 0.4008 7.7539 20 1 1.7392 -0.2992 8.9678 21 1 1.7403 1.8002 7.7546 22 6 1.5301 -0.0001 2.4984 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2494 30 1 1.6767 -0.2074 -2.1393 31 1 3.1300 -0.7209 -1.2496 32 1 1.8933 -2.6776 0.3591 33 1 0.4400 -2.1638 1.2491 34 1 3.1294 -2.8850 2.4991 35 1 1.6758 -3.9124 2.4989 36 1 -0.2933 -3.0469 3.7470 37 1 2.8575 -1.8816 7.2329 38 1 1.8934 1.0276 2.4985 39 1 0.4401 -0.0001 2.4985 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259856183.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:56 Heat of formation + Delta-G solvation = -104.052276 kcal Electronic energy + Delta-G solvation = -17217.912239 eV Core-core repulsion = 14737.256898 eV Total energy + Delta-G solvation = -2480.655341 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.65927 -37.84433 -35.12948 -34.06243 -31.74434 -29.47712 -28.20489 -28.06742 -26.42720 -23.49455 -22.67924 -20.57665 -19.24300 -18.14840 -17.41192 -16.62768 -16.08034 -15.51100 -15.36676 -14.84995 -14.75745 -14.41101 -14.04371 -13.63714 -13.22257 -13.04813 -12.90113 -12.76993 -12.61228 -12.49579 -12.45255 -12.31557 -12.15325 -11.69035 -11.65208 -11.37987 -11.24058 -10.97573 -10.74875 -10.54346 -10.27555 -10.02100 -8.04844 -6.15285 1.38794 1.40879 1.47899 2.44784 3.21465 3.82150 3.94305 4.01508 4.05069 4.29699 4.35925 4.52930 4.65972 4.74568 4.80547 4.86746 4.93816 4.94426 5.01722 5.03614 5.10999 5.14145 5.16742 5.18724 5.32841 5.34078 5.37173 5.44911 5.48495 5.63092 5.66845 5.74663 5.76265 5.98846 6.13289 6.42261 6.88916 7.36041 7.50465 8.98191 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.036085 B = 0.008558 C = 0.007758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.751082 B = 3271.022246 C = 3608.334106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.063 4.063 3 C -0.141 4.141 4 C -0.136 4.136 5 C -0.071 4.071 6 H 0.049 0.951 7 C -0.097 4.097 8 C -0.148 4.148 9 C 0.113 3.887 10 H 0.045 0.955 11 O -0.568 6.568 12 C 0.049 3.951 13 H 0.000 1.000 14 C -0.513 4.513 15 H 0.041 0.959 16 C 0.012 3.988 17 N -0.921 5.921 18 Si 0.948 3.052 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.273 1.273 22 C -0.085 4.085 23 H 0.039 0.961 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.042 0.958 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.364 0.636 37 H 0.259 0.741 38 H 0.035 0.965 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.176 -0.873 -13.102 13.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.063 4.063 3 C -0.198 4.198 4 C -0.193 4.193 5 C -0.089 4.089 6 H 0.067 0.933 7 C -0.134 4.134 8 C -0.186 4.186 9 C 0.054 3.946 10 H 0.063 0.937 11 O -0.372 6.372 12 C 0.031 3.969 13 H 0.018 0.982 14 C -0.551 4.551 15 H 0.059 0.941 16 C -0.185 4.185 17 N -0.562 5.562 18 Si 0.775 3.225 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.198 1.198 22 C -0.123 4.123 23 H 0.059 0.941 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.209 0.791 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.990 -0.315 -12.967 13.123 hybrid contribution -0.104 -0.221 1.462 1.483 sum -2.094 -0.536 -11.505 11.706 Atomic orbital electron populations 1.21903 0.94675 1.01814 1.01117 1.20527 0.95783 0.95311 0.94646 1.21902 1.00698 0.95753 1.01491 1.21874 1.00766 1.00449 0.96227 1.21143 0.98551 0.95196 0.94052 0.93270 1.21490 1.00892 0.94679 0.96346 1.22261 1.00300 0.99127 0.96862 1.21762 0.79410 0.98442 0.95006 0.93704 1.86554 1.20997 1.32233 1.97449 1.18628 0.93491 0.91796 0.92991 0.98188 1.21394 1.30236 1.11319 0.92129 0.94100 1.25634 0.95454 0.95881 1.01566 1.69959 1.38455 1.24172 1.23637 0.85767 0.78605 0.78884 0.79293 1.20249 1.20751 1.19801 1.21449 0.99656 0.97310 0.93869 0.94141 0.91765 0.92429 0.93033 0.91448 0.93850 0.92065 0.91673 0.92893 0.90817 0.91691 0.93013 0.91628 0.79119 0.93229 0.94599 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 7.77 71.98 0.56 -3.13 16 2 C -0.06 -1.71 0.57 -52.18 -0.03 -1.74 16 3 C -0.14 -3.76 8.12 71.98 0.58 -3.17 16 4 C -0.14 -2.98 8.12 71.98 0.58 -2.39 16 5 C -0.07 -2.43 1.55 -10.80 -0.02 -2.44 16 6 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 7 C -0.10 -3.11 4.35 30.59 0.13 -2.98 16 8 C -0.15 -5.50 5.64 30.60 0.17 -5.33 16 9 C 0.11 5.33 2.99 30.59 0.09 5.42 16 10 H 0.05 2.46 6.07 -2.39 -0.01 2.44 16 11 O -0.57 -25.66 11.59 -148.98 -1.73 -27.39 16 12 C 0.05 2.55 1.94 -11.56 -0.02 2.53 16 13 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 14 C -0.51 -29.73 8.21 25.60 0.21 -29.52 16 15 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 16 C 0.01 0.69 5.30 84.66 0.45 1.14 16 17 N -0.92 -54.45 11.32 21.45 0.24 -54.21 16 18 Si 0.95 45.72 29.54 68.60 2.03 47.75 16 19 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 21 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 22 C -0.09 -3.69 3.57 30.58 0.11 -3.58 16 23 H 0.04 1.25 6.43 -2.39 -0.02 1.23 16 24 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 1.50 6.43 -2.39 -0.02 1.49 16 26 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.04 1.30 6.43 -2.39 -0.02 1.29 16 29 H 0.06 1.28 6.43 -2.39 -0.02 1.26 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.97 6.43 -2.39 -0.02 1.96 16 33 H 0.06 2.11 5.97 -2.39 -0.01 2.10 16 34 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.36 12.88 9.08 -74.06 -0.67 12.20 16 37 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 38 H 0.04 1.56 6.43 -2.39 -0.02 1.55 16 39 H 0.05 2.21 5.97 -2.39 -0.01 2.20 16 Total: -1.00 -63.58 286.89 3.71 -59.87 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.35 Total: 19.17 kcal Atomic # 6 Polarization: -48.01 SS G_CDS: 2.82 Total: -45.19 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.24 Total: -54.21 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -1.73 Total: -27.39 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -63.58 3.71 -59.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259856183.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.182 kcal (2) G-P(sol) polarization free energy of solvation -63.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds