Wall clock time and date at job start Mon Mar 30 2020 03:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47106 * 2 1 4 4 C 1.52998 * 109.46853 * 239.99756 * 2 1 3 5 5 C 1.53005 * 109.46800 * 120.00174 * 2 1 3 6 6 C 1.52993 * 109.47288 * 49.83540 * 5 2 1 7 7 C 1.50701 * 109.52443 * 291.36635 * 6 5 2 8 8 H 1.07999 * 120.00103 * 115.10185 * 7 6 5 9 9 C 1.37878 * 120.00220 * 295.10756 * 7 6 5 10 10 N 1.31513 * 119.99997 * 7.31857 * 9 7 6 11 11 Si 1.86791 * 120.00199 * 187.31947 * 9 7 6 12 12 H 1.48505 * 109.47278 * 59.99734 * 11 9 7 13 13 H 1.48502 * 109.47317 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47527 * 299.99901 * 11 9 7 15 15 C 1.53182 * 109.57362 * 171.21348 * 6 5 2 16 16 C 1.53181 * 109.03626 * 183.08042 * 15 6 5 17 17 C 1.53089 * 109.16195 * 56.98140 * 16 15 6 18 18 O 1.42904 * 109.41593 * 302.38642 * 17 16 15 19 19 C 1.42906 * 114.09389 * 61.16088 * 18 17 16 20 20 H 1.09005 * 109.46940 * 282.70679 * 1 2 3 21 21 H 1.08997 * 109.46868 * 42.70161 * 1 2 3 22 22 H 1.08997 * 109.47242 * 162.70371 * 1 2 3 23 23 H 1.09002 * 109.46754 * 180.02562 * 3 2 1 24 24 H 1.08995 * 109.47106 * 299.99740 * 3 2 1 25 25 H 1.08998 * 109.47197 * 60.00581 * 3 2 1 26 26 H 1.09001 * 109.47688 * 343.00722 * 4 2 1 27 27 H 1.09004 * 109.47286 * 103.01289 * 4 2 1 28 28 H 1.09004 * 109.47294 * 223.00750 * 4 2 1 29 29 H 1.08995 * 109.46696 * 289.83050 * 5 2 1 30 30 H 1.09000 * 109.46635 * 169.83393 * 5 2 1 31 31 H 0.96994 * 120.00386 * 180.02562 * 10 9 7 32 32 H 1.09000 * 109.54173 * 302.94888 * 15 6 5 33 33 H 1.08996 * 109.54591 * 63.21130 * 15 6 5 34 34 H 1.09001 * 109.52239 * 176.88475 * 16 15 6 35 35 H 1.08994 * 109.52336 * 297.07661 * 16 15 6 36 36 H 1.09001 * 109.48685 * 62.37288 * 17 16 15 37 37 H 1.09000 * 109.48391 * 182.39879 * 17 16 15 38 38 H 1.09007 * 109.48163 * 178.85697 * 19 18 17 39 39 H 1.09004 * 109.48199 * 58.82509 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2493 6 6 1.3328 -2.0714 1.3831 7 6 -0.1206 -1.8482 1.7133 8 1 -0.8856 -2.1453 1.0113 9 6 -0.4735 -1.2645 2.9115 10 7 0.4551 -0.7723 3.7020 11 14 -2.2708 -1.1730 3.4122 12 1 -2.8298 -2.5457 3.5034 13 1 -2.3831 -0.5045 4.7335 14 1 -3.0283 -0.3964 2.3981 15 6 1.9918 -2.8875 2.4994 16 6 1.3254 -4.2649 2.5713 17 6 1.4385 -4.9497 1.2068 18 8 0.8334 -4.1242 0.2094 19 6 1.4454 -2.8409 0.0644 20 1 -0.3633 0.2261 1.0025 21 1 -0.3633 0.7552 -0.6969 22 1 -0.3633 -0.9812 -0.3055 23 1 3.1300 1.4424 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 1.2345 -1.3165 -1.6794 27 1 2.3792 0.0131 -1.9798 28 1 2.8696 -1.3744 -0.9785 29 1 1.8323 -0.1135 2.1299 30 1 3.1147 -0.8811 1.1632 31 1 0.2069 -0.3620 4.5451 32 1 3.0539 -3.0069 2.2854 33 1 1.8661 -2.3715 3.4512 34 1 1.8250 -4.8723 3.3261 35 1 0.2742 -4.1477 2.8341 36 1 2.4897 -5.1031 0.9629 37 1 0.9287 -5.9126 1.2399 38 1 0.9406 -2.2846 -0.7254 39 1 2.4968 -2.9667 -0.1943 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259865156.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:15 Heat of formation + Delta-G solvation = -45.535089 kcal Electronic energy + Delta-G solvation = -17923.939685 eV Core-core repulsion = 15445.821839 eV Total energy + Delta-G solvation = -2478.117845 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.25012 -36.48327 -33.49525 -31.31673 -30.19140 -27.18141 -26.72209 -25.36015 -24.40824 -23.40264 -21.05985 -18.75057 -17.75019 -15.98054 -15.23682 -15.08368 -14.51681 -13.64880 -13.62703 -13.44824 -13.06937 -12.86726 -12.12949 -11.83296 -11.76172 -11.49122 -11.33781 -10.93191 -10.80693 -10.65034 -10.36457 -10.24869 -10.16340 -9.90159 -9.72180 -9.54450 -9.44915 -9.28136 -8.95386 -8.49928 -8.08661 -8.04649 -5.87927 -3.84626 3.34984 3.40240 3.44942 4.48825 4.95317 5.36158 5.70197 5.74134 5.80457 5.88662 6.04428 6.15740 6.17802 6.29333 6.40797 6.42301 6.45955 6.49634 6.58680 6.68430 6.72737 6.75972 6.82097 6.85926 6.98907 7.20472 7.22023 7.27549 7.39506 7.49644 7.66453 7.80404 7.84591 8.02938 8.16548 8.35957 8.57709 9.03188 9.66583 11.12924 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.019164 B = 0.016969 C = 0.011272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.701081 B = 1649.633208 C = 2483.410459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.061 4.061 3 C -0.133 4.133 4 C -0.152 4.152 5 C -0.093 4.093 6 C 0.044 3.956 7 C -0.464 4.464 8 H 0.058 0.942 9 C 0.059 3.941 10 N -0.890 5.890 11 Si 0.877 3.123 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.278 1.278 15 C -0.110 4.110 16 C -0.140 4.140 17 C 0.068 3.932 18 O -0.387 6.387 19 C 0.051 3.949 20 H 0.079 0.921 21 H 0.008 0.992 22 H 0.064 0.936 23 H 0.041 0.959 24 H 0.039 0.961 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.036 0.964 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.014 0.986 31 H 0.257 0.743 32 H 0.013 0.987 33 H 0.097 0.903 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.027 0.973 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.010 -0.948 -4.623 5.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.061 4.061 3 C -0.191 4.191 4 C -0.208 4.208 5 C -0.131 4.131 6 C 0.044 3.956 7 C -0.503 4.503 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.530 5.530 11 Si 0.705 3.295 12 H -0.205 1.205 13 H -0.217 1.217 14 H -0.204 1.204 15 C -0.147 4.147 16 C -0.177 4.177 17 C -0.009 4.009 18 O -0.305 6.305 19 C -0.025 4.025 20 H 0.098 0.902 21 H 0.027 0.973 22 H 0.083 0.917 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.033 0.967 31 H 0.067 0.933 32 H 0.032 0.968 33 H 0.116 0.884 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.122 0.878 39 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 2.863 -0.907 -4.551 5.452 hybrid contribution -0.637 0.120 0.610 0.890 sum 2.226 -0.787 -3.941 4.594 Atomic orbital electron populations 1.22262 0.93880 0.99879 1.01942 1.20431 0.96780 0.93659 0.95221 1.21895 0.99602 0.97092 1.00494 1.22560 1.00799 0.99669 0.97817 1.21717 0.94691 0.99081 0.97604 1.18695 0.95858 0.90944 0.90112 1.20880 0.90851 1.36738 1.01811 0.92373 1.24771 0.96266 0.96133 0.96863 1.69762 1.31667 1.39651 1.11909 0.86896 0.86734 0.78151 0.77675 1.20546 1.21690 1.20380 1.21605 0.94302 0.94463 1.04374 1.22015 1.02774 0.97525 0.95430 1.22361 0.95677 0.93353 0.89549 1.87825 1.58850 1.27477 1.56390 1.23816 0.94469 0.83467 1.00699 0.90237 0.97348 0.91747 0.94025 0.94178 0.92988 0.92033 0.94531 0.92773 0.88465 0.96684 0.93270 0.96816 0.88439 0.94208 0.90536 0.95439 0.91164 0.87837 0.96429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.54 6.83 37.16 0.25 -2.29 16 2 C -0.06 -1.18 0.77 -154.51 -0.12 -1.30 16 3 C -0.13 -2.33 8.12 37.16 0.30 -2.03 16 4 C -0.15 -2.61 7.59 37.16 0.28 -2.33 16 5 C -0.09 -2.04 3.53 -26.73 -0.09 -2.14 16 6 C 0.04 1.01 0.25 -155.52 -0.04 0.97 16 7 C -0.46 -11.48 3.04 -34.44 -0.10 -11.59 16 8 H 0.06 1.51 6.74 -52.49 -0.35 1.16 16 9 C 0.06 1.49 4.13 -17.82 -0.07 1.42 16 10 N -0.89 -23.22 9.38 55.43 0.52 -22.70 16 11 Si 0.88 20.64 29.54 -169.99 -5.02 15.62 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 C -0.11 -2.51 4.58 -26.54 -0.12 -2.63 16 16 C -0.14 -2.94 5.88 -26.59 -0.16 -3.10 16 17 C 0.07 1.32 6.84 37.20 0.25 1.57 16 18 O -0.39 -8.49 10.45 -35.23 -0.37 -8.86 16 19 C 0.05 1.07 3.82 37.20 0.14 1.21 16 20 H 0.08 1.86 5.83 -51.93 -0.30 1.56 16 21 H 0.01 0.14 8.02 -51.93 -0.42 -0.27 16 22 H 0.06 1.38 4.41 -51.93 -0.23 1.15 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.63 8.13 -51.93 -0.42 0.21 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.06 1.06 5.39 -51.93 -0.28 0.78 16 27 H 0.04 0.56 7.68 -51.93 -0.40 0.16 16 28 H 0.05 0.93 5.71 -51.93 -0.30 0.64 16 29 H 0.10 2.41 6.02 -51.93 -0.31 2.10 16 30 H 0.01 0.31 7.88 -51.93 -0.41 -0.10 16 31 H 0.26 6.63 8.31 -40.82 -0.34 6.30 16 32 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.10 2.47 5.92 -51.93 -0.31 2.17 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.78 7.39 -51.93 -0.38 1.40 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.10 2.13 2.94 -51.92 -0.15 1.98 16 39 H 0.02 0.36 6.86 -51.93 -0.36 0.00 16 LS Contribution 272.18 15.07 4.10 4.10 Total: -1.00 -25.43 272.18 -6.54 -31.96 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.29 Total: 2.11 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 0.53 Total: -22.23 kcal Atomic # 7 Polarization: -23.22 SS G_CDS: 0.52 Total: -22.70 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.37 Total: -8.86 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -25.43 -6.54 -31.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865156.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.570 kcal (2) G-P(sol) polarization free energy of solvation -25.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds