Wall clock time and date at job start Mon Mar 30 2020 03:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47106 * 2 1 4 4 C 1.52998 * 109.46853 * 239.99756 * 2 1 3 5 5 C 1.53005 * 109.46800 * 120.00174 * 2 1 3 6 6 C 1.52993 * 109.47288 * 49.83540 * 5 2 1 7 7 C 1.50701 * 109.52443 * 291.36635 * 6 5 2 8 8 H 1.07999 * 120.00103 * 115.10185 * 7 6 5 9 9 C 1.37878 * 120.00220 * 295.10756 * 7 6 5 10 10 N 1.31513 * 119.99997 * 7.31857 * 9 7 6 11 11 Si 1.86791 * 120.00199 * 187.31947 * 9 7 6 12 12 H 1.48505 * 109.47278 * 59.99734 * 11 9 7 13 13 H 1.48502 * 109.47317 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47527 * 299.99901 * 11 9 7 15 15 C 1.53182 * 109.57362 * 171.21348 * 6 5 2 16 16 C 1.53181 * 109.03626 * 183.08042 * 15 6 5 17 17 C 1.53089 * 109.16195 * 56.98140 * 16 15 6 18 18 O 1.42904 * 109.41593 * 302.38642 * 17 16 15 19 19 C 1.42906 * 114.09389 * 61.16088 * 18 17 16 20 20 H 1.09005 * 109.46940 * 282.70679 * 1 2 3 21 21 H 1.08997 * 109.46868 * 42.70161 * 1 2 3 22 22 H 1.08997 * 109.47242 * 162.70371 * 1 2 3 23 23 H 1.09002 * 109.46754 * 180.02562 * 3 2 1 24 24 H 1.08995 * 109.47106 * 299.99740 * 3 2 1 25 25 H 1.08998 * 109.47197 * 60.00581 * 3 2 1 26 26 H 1.09001 * 109.47688 * 343.00722 * 4 2 1 27 27 H 1.09004 * 109.47286 * 103.01289 * 4 2 1 28 28 H 1.09004 * 109.47294 * 223.00750 * 4 2 1 29 29 H 1.08995 * 109.46696 * 289.83050 * 5 2 1 30 30 H 1.09000 * 109.46635 * 169.83393 * 5 2 1 31 31 H 0.96994 * 120.00386 * 180.02562 * 10 9 7 32 32 H 1.09000 * 109.54173 * 302.94888 * 15 6 5 33 33 H 1.08996 * 109.54591 * 63.21130 * 15 6 5 34 34 H 1.09001 * 109.52239 * 176.88475 * 16 15 6 35 35 H 1.08994 * 109.52336 * 297.07661 * 16 15 6 36 36 H 1.09001 * 109.48685 * 62.37288 * 17 16 15 37 37 H 1.09000 * 109.48391 * 182.39879 * 17 16 15 38 38 H 1.09007 * 109.48163 * 178.85697 * 19 18 17 39 39 H 1.09004 * 109.48199 * 58.82509 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2493 6 6 1.3328 -2.0714 1.3831 7 6 -0.1206 -1.8482 1.7133 8 1 -0.8856 -2.1453 1.0113 9 6 -0.4735 -1.2645 2.9115 10 7 0.4551 -0.7723 3.7020 11 14 -2.2708 -1.1730 3.4122 12 1 -2.8298 -2.5457 3.5034 13 1 -2.3831 -0.5045 4.7335 14 1 -3.0283 -0.3964 2.3981 15 6 1.9918 -2.8875 2.4994 16 6 1.3254 -4.2649 2.5713 17 6 1.4385 -4.9497 1.2068 18 8 0.8334 -4.1242 0.2094 19 6 1.4454 -2.8409 0.0644 20 1 -0.3633 0.2261 1.0025 21 1 -0.3633 0.7552 -0.6969 22 1 -0.3633 -0.9812 -0.3055 23 1 3.1300 1.4424 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 1.2345 -1.3165 -1.6794 27 1 2.3792 0.0131 -1.9798 28 1 2.8696 -1.3744 -0.9785 29 1 1.8323 -0.1135 2.1299 30 1 3.1147 -0.8811 1.1632 31 1 0.2069 -0.3620 4.5451 32 1 3.0539 -3.0069 2.2854 33 1 1.8661 -2.3715 3.4512 34 1 1.8250 -4.8723 3.3261 35 1 0.2742 -4.1477 2.8341 36 1 2.4897 -5.1031 0.9629 37 1 0.9287 -5.9126 1.2399 38 1 0.9406 -2.2846 -0.7254 39 1 2.4968 -2.9667 -0.1943 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259865156.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:15 Heat of formation + Delta-G solvation = -58.556352 kcal Electronic energy + Delta-G solvation = -17924.504329 eV Core-core repulsion = 15445.821839 eV Total energy + Delta-G solvation = -2478.682490 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.93654 -38.08320 -35.27896 -33.15046 -31.86322 -28.70450 -28.39995 -26.98248 -26.22681 -25.05635 -22.73252 -20.56575 -19.31882 -17.82594 -16.92476 -16.84213 -16.27092 -15.38183 -15.24724 -15.09461 -14.61470 -14.53106 -13.81023 -13.49213 -13.37639 -13.10749 -12.94941 -12.71475 -12.61017 -12.51126 -12.00772 -11.90302 -11.81811 -11.62583 -11.38391 -11.29582 -11.12541 -10.91215 -10.66921 -10.29825 -9.93848 -9.80293 -7.84518 -5.83210 1.42400 1.46241 1.50388 2.53741 3.32255 3.43276 4.17619 4.27964 4.30619 4.32577 4.42338 4.59524 4.66333 4.74106 4.78021 4.86734 4.97742 5.03244 5.05504 5.08596 5.10857 5.18946 5.22550 5.31226 5.37899 5.48038 5.58815 5.60944 5.69201 5.78431 5.84681 5.94047 6.09170 6.25730 6.31803 6.62835 6.72246 7.07290 7.68226 9.13722 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.019164 B = 0.016969 C = 0.011272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.701081 B = 1649.633208 C = 2483.410459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.063 4.063 3 C -0.129 4.129 4 C -0.146 4.146 5 C -0.088 4.088 6 C 0.038 3.962 7 C -0.453 4.453 8 H 0.042 0.958 9 C 0.027 3.973 10 N -0.905 5.905 11 Si 0.913 3.087 12 H -0.284 1.284 13 H -0.294 1.294 14 H -0.277 1.277 15 C -0.111 4.111 16 C -0.137 4.137 17 C 0.066 3.934 18 O -0.404 6.404 19 C 0.055 3.945 20 H 0.045 0.955 21 H 0.027 0.973 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.034 0.966 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.018 0.982 31 H 0.251 0.749 32 H 0.023 0.977 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.745 -1.378 -6.224 7.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.063 4.063 3 C -0.187 4.187 4 C -0.202 4.202 5 C -0.126 4.126 6 C 0.038 3.962 7 C -0.492 4.492 8 H 0.061 0.939 9 C -0.170 4.170 10 N -0.546 5.546 11 Si 0.742 3.258 12 H -0.210 1.210 13 H -0.221 1.221 14 H -0.202 1.202 15 C -0.149 4.149 16 C -0.174 4.174 17 C -0.010 4.010 18 O -0.323 6.323 19 C -0.020 4.020 20 H 0.064 0.936 21 H 0.046 0.954 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.113 0.887 38 H 0.127 0.873 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.593 -1.339 -6.156 7.253 hybrid contribution -0.862 0.242 1.126 1.439 sum 2.731 -1.097 -5.030 5.828 Atomic orbital electron populations 1.22101 0.95052 0.99753 1.00337 1.20424 0.95732 0.94948 0.95151 1.21842 1.00393 0.95699 1.00727 1.22441 1.00714 1.00095 0.96968 1.21591 0.94846 0.98418 0.97729 1.18749 0.94593 0.91711 0.91170 1.20892 0.91715 1.35520 1.01052 0.93944 1.25137 0.97971 0.96586 0.97292 1.69886 1.32311 1.40536 1.11867 0.86327 0.84720 0.77604 0.77175 1.21030 1.22054 1.20218 1.21551 0.95082 0.95331 1.02951 1.21956 1.00865 0.97168 0.97457 1.22521 0.97181 0.93634 0.87711 1.87803 1.59684 1.27806 1.57052 1.23791 0.95333 0.83185 0.99670 0.93556 0.95365 0.92863 0.92761 0.92049 0.94660 0.91976 0.92072 0.92681 0.91726 0.96297 0.93931 0.95867 0.91412 0.92086 0.93466 0.93438 0.88741 0.87276 0.95024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.68 6.83 71.98 0.49 -4.19 16 2 C -0.06 -2.32 0.77 -52.18 -0.04 -2.36 16 3 C -0.13 -4.25 8.12 71.98 0.58 -3.66 16 4 C -0.15 -4.55 7.59 71.98 0.55 -4.01 16 5 C -0.09 -3.81 3.53 30.59 0.11 -3.70 16 6 C 0.04 1.72 0.25 -52.84 -0.01 1.70 16 7 C -0.45 -22.58 3.04 25.60 0.08 -22.51 16 8 H 0.04 2.23 6.74 -2.91 -0.02 2.21 16 9 C 0.03 1.41 4.13 84.66 0.35 1.75 16 10 N -0.90 -48.49 9.38 21.45 0.20 -48.29 16 11 Si 0.91 42.98 29.54 68.60 2.03 45.01 16 12 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 13 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 14 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 15 C -0.11 -5.04 4.58 30.72 0.14 -4.90 16 16 C -0.14 -5.60 5.88 30.68 0.18 -5.42 16 17 C 0.07 2.40 6.84 72.01 0.49 2.90 16 18 O -0.40 -16.93 10.45 -148.98 -1.56 -18.49 16 19 C 0.06 2.23 3.82 72.01 0.28 2.50 16 20 H 0.05 2.17 5.83 -2.38 -0.01 2.16 16 21 H 0.03 1.00 8.02 -2.39 -0.02 0.98 16 22 H 0.05 2.24 4.41 -2.39 -0.01 2.23 16 23 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.06 1.74 8.13 -2.39 -0.02 1.72 16 25 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.06 1.95 5.39 -2.39 -0.01 1.93 16 27 H 0.06 1.62 7.68 -2.39 -0.02 1.60 16 28 H 0.05 1.71 5.71 -2.38 -0.01 1.70 16 29 H 0.06 3.25 6.02 -2.39 -0.01 3.24 16 30 H 0.02 0.77 7.88 -2.39 -0.02 0.75 16 31 H 0.25 13.35 8.31 -92.71 -0.77 12.58 16 32 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 3.49 5.92 -2.39 -0.01 3.48 16 34 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.05 2.19 7.39 -2.39 -0.02 2.17 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 37 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.11 4.27 2.94 -2.38 -0.01 4.27 16 39 H 0.03 1.19 6.86 -2.38 -0.02 1.17 16 Total: -1.00 -54.05 272.18 4.88 -49.17 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 1.02 Total: 14.48 kcal Atomic # 6 Polarization: -45.08 SS G_CDS: 3.19 Total: -41.88 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: 0.20 Total: -48.29 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -1.56 Total: -18.49 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -54.05 4.88 -49.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865156.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.390 kcal (2) G-P(sol) polarization free energy of solvation -54.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds