Wall clock time and date at job start Mon Mar 30 2020 03:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47043 * 2 1 4 4 C 1.52997 * 109.47033 * 120.00015 * 2 1 3 5 5 H 1.09003 * 109.47212 * 53.65931 * 4 2 1 6 6 C 1.52998 * 109.47513 * 293.64969 * 4 2 1 7 7 C 1.50704 * 109.46684 * 68.65247 * 6 4 2 8 8 H 1.07994 * 120.00018 * 4.99993 * 7 6 4 9 9 C 1.37873 * 119.99666 * 184.99268 * 7 6 4 10 10 N 1.31512 * 120.00191 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99972 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47113 * 90.00125 * 11 9 7 13 13 H 1.48500 * 109.47064 * 210.00521 * 11 9 7 14 14 H 1.48510 * 109.47000 * 330.00210 * 11 9 7 15 15 C 1.53003 * 109.46860 * 173.64907 * 4 2 1 16 16 H 1.09001 * 109.51831 * 65.14915 * 15 4 2 17 17 C 1.53174 * 109.52739 * 304.95776 * 15 4 2 18 18 C 1.53171 * 109.03869 * 183.11158 * 17 15 4 19 19 C 1.53090 * 109.16392 * 56.98386 * 18 17 15 20 20 O 1.42910 * 109.41244 * 302.38996 * 19 18 17 21 21 C 1.42904 * 114.09527 * 61.15960 * 20 19 18 22 22 H 1.08998 * 109.46818 * 313.14167 * 1 2 3 23 23 H 1.09000 * 109.47275 * 73.14027 * 1 2 3 24 24 H 1.08999 * 109.47162 * 193.13986 * 1 2 3 25 25 H 1.09001 * 109.47180 * 240.00294 * 2 1 3 26 26 H 1.09003 * 109.47011 * 177.29622 * 3 2 1 27 27 H 1.08996 * 109.47304 * 297.29738 * 3 2 1 28 28 H 1.09002 * 109.46918 * 57.29778 * 3 2 1 29 29 H 1.09002 * 109.47232 * 188.65333 * 6 4 2 30 30 H 1.09001 * 109.46940 * 308.66148 * 6 4 2 31 31 H 0.97010 * 120.00004 * 179.97438 * 10 9 7 32 32 H 1.08997 * 109.54477 * 302.98650 * 17 15 4 33 33 H 1.09008 * 109.53930 * 63.24323 * 17 15 4 34 34 H 1.08998 * 109.52796 * 297.07410 * 18 17 15 35 35 H 1.09000 * 109.57314 * 176.91825 * 18 17 15 36 36 H 1.09001 * 109.48018 * 182.40822 * 19 18 17 37 37 H 1.09001 * 109.48867 * 62.37666 * 19 18 17 38 38 H 1.08997 * 109.47852 * 178.85928 * 21 20 19 39 39 H 1.08991 * 109.49288 * 58.82949 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5870 -1.7109 1.3078 6 6 1.6645 0.0861 2.4934 7 6 0.1705 0.0445 2.6871 8 1 -0.4409 -0.5679 2.0410 9 6 -0.4156 0.7883 3.6892 10 7 0.3290 1.5344 4.4757 11 14 -2.2673 0.7362 3.9298 12 1 -2.6129 -0.3538 4.8772 13 1 -2.7318 2.0354 4.4791 14 1 -2.9293 0.4857 2.6243 15 6 3.5617 -0.8609 1.1720 16 1 4.0203 0.1274 1.2054 17 6 3.9459 -1.5609 -0.1352 18 6 5.4637 -1.7646 -0.1655 19 6 5.8880 -2.5651 1.0686 20 8 5.4735 -1.8738 2.2487 21 6 4.0595 -1.6962 2.3544 22 1 -0.3633 0.7027 0.7498 23 1 -0.3634 0.2980 -0.9835 24 1 -0.3633 -1.0007 0.2336 25 1 1.8934 -0.5138 -0.8900 26 1 3.1290 1.4429 0.0485 27 1 1.7168 1.9422 -0.9132 28 1 1.6376 1.9701 0.8648 29 1 2.1562 -0.3424 3.3667 30 1 1.9857 1.1200 2.3662 31 1 -0.0835 2.0579 5.1806 32 1 3.4469 -2.5283 -0.1911 33 1 3.6438 -0.9440 -0.9816 34 1 5.9616 -0.7951 -0.1597 35 1 5.7408 -2.3110 -1.0670 36 1 6.9723 -2.6764 1.0745 37 1 5.4216 -3.5499 1.0414 38 1 3.8265 -1.1816 3.2866 39 1 3.5689 -2.6694 2.3441 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259867115.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:11 Heat of formation + Delta-G solvation = -76.632346 kcal Electronic energy + Delta-G solvation = -16945.924335 eV Core-core repulsion = 14466.458012 eV Total energy + Delta-G solvation = -2479.466324 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.41920 -36.92713 -33.13961 -32.31083 -31.26516 -28.39857 -26.54650 -25.23262 -24.68600 -22.62806 -21.08736 -19.94134 -17.98478 -16.42450 -15.84795 -15.70675 -14.71737 -14.48071 -14.14979 -13.92174 -13.30336 -13.07344 -12.65923 -12.31099 -12.02579 -11.74881 -11.37801 -11.10740 -11.06901 -10.92232 -10.80319 -10.67304 -10.45594 -10.33093 -10.14256 -10.09700 -9.55307 -9.49016 -9.04377 -8.87947 -8.56086 -8.23980 -5.95312 -3.92371 3.32808 3.40228 3.42136 4.21708 4.48688 5.04238 5.11739 5.14617 5.31700 5.39667 5.48894 5.70313 5.75566 5.80381 5.87285 5.91529 6.03006 6.07501 6.19444 6.24037 6.34614 6.44019 6.51203 6.53822 6.60697 6.80997 6.83666 6.91766 6.99434 7.11433 7.25601 7.53108 7.54781 7.77314 7.89819 8.07102 8.49544 9.10809 9.66796 11.15941 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.034418 B = 0.007915 C = 0.007029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.322935 B = 3536.565488 C = 3982.358073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.074 4.074 3 C -0.146 4.146 4 C -0.072 4.072 5 H 0.054 0.946 6 C 0.022 3.978 7 C -0.513 4.513 8 H 0.067 0.933 9 C 0.055 3.945 10 N -0.895 5.895 11 Si 0.882 3.118 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.274 1.274 15 C -0.115 4.115 16 H 0.075 0.925 17 C -0.119 4.119 18 C -0.155 4.155 19 C 0.061 3.939 20 O -0.388 6.388 21 C 0.065 3.935 22 H 0.095 0.905 23 H 0.021 0.979 24 H 0.044 0.956 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.011 0.989 30 H 0.029 0.971 31 H 0.258 0.742 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.044 0.956 38 H 0.104 0.896 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.984 -5.402 -8.833 12.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.093 4.093 3 C -0.203 4.203 4 C -0.090 4.090 5 H 0.073 0.927 6 C -0.015 4.015 7 C -0.551 4.551 8 H 0.085 0.915 9 C -0.146 4.146 10 N -0.535 5.535 11 Si 0.710 3.290 12 H -0.209 1.209 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.134 4.134 16 H 0.093 0.907 17 C -0.156 4.156 18 C -0.193 4.193 19 C -0.016 4.016 20 O -0.307 6.307 21 C -0.011 4.011 22 H 0.114 0.886 23 H 0.040 0.960 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.093 0.907 29 H 0.030 0.970 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.121 0.879 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.095 -5.212 -8.546 12.269 hybrid contribution -1.259 -0.101 -0.032 1.263 sum 5.836 -5.312 -8.578 11.656 Atomic orbital electron populations 1.22268 0.95366 1.02678 1.00070 1.20929 0.96106 0.95624 0.96617 1.21927 0.99825 0.97112 1.01433 1.21268 0.90793 0.99386 0.97591 0.92733 1.19306 0.96134 0.95521 0.90539 1.21544 0.92904 1.26122 1.14558 0.91463 1.24992 0.97455 0.95954 0.96153 1.69966 1.34882 1.29213 1.19467 0.86755 0.86590 0.77261 0.78397 1.20877 1.21421 1.19856 1.21855 0.98307 0.99385 0.93852 0.90669 1.21724 0.94338 1.00679 0.98860 1.22199 0.97643 1.01250 0.98228 1.22491 0.99436 0.94302 0.85416 1.87920 1.23855 1.77829 1.41083 1.22807 0.79649 0.98786 0.99898 0.88600 0.96036 0.93720 0.93563 0.93842 0.94611 0.90724 0.97049 0.95280 0.93202 0.92363 0.91336 0.91383 0.91707 0.89748 0.93762 0.87852 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 7.56 37.16 0.28 -2.55 16 2 C -0.07 -1.35 2.40 -90.62 -0.22 -1.57 16 3 C -0.15 -2.63 8.39 37.16 0.31 -2.32 16 4 C -0.07 -1.40 1.35 -90.62 -0.12 -1.52 16 5 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 6 C 0.02 0.52 4.09 -27.88 -0.11 0.41 16 7 C -0.51 -13.48 6.52 -34.44 -0.22 -13.70 16 8 H 0.07 1.71 5.12 -52.49 -0.27 1.44 16 9 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 10 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 11 Si 0.88 21.20 29.54 -169.99 -5.02 16.18 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 15 C -0.12 -1.97 1.63 -90.48 -0.15 -2.12 16 16 H 0.07 1.37 6.80 -51.93 -0.35 1.02 16 17 C -0.12 -1.69 4.72 -26.55 -0.13 -1.82 16 18 C -0.16 -1.94 6.14 -26.60 -0.16 -2.11 16 19 C 0.06 0.79 6.84 37.20 0.25 1.05 16 20 O -0.39 -6.52 10.77 -35.23 -0.38 -6.90 16 21 C 0.06 1.12 5.84 37.21 0.22 1.34 16 22 H 0.10 2.13 5.61 -51.93 -0.29 1.84 16 23 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.04 0.86 7.18 -51.93 -0.37 0.48 16 25 H 0.05 0.76 6.06 -51.93 -0.31 0.45 16 26 H 0.04 0.73 6.61 -51.93 -0.34 0.39 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 1.56 6.29 -51.93 -0.33 1.23 16 29 H 0.01 0.29 6.27 -51.93 -0.33 -0.03 16 30 H 0.03 0.75 5.90 -51.93 -0.31 0.45 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.96 6.41 -51.92 -0.33 0.62 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.10 1.97 6.52 -51.93 -0.34 1.63 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 286.10 15.07 4.31 4.31 Total: -1.00 -28.07 286.10 -7.01 -35.08 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.51 Total: 0.29 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: -0.15 Total: -23.50 kcal Atomic # 7 Polarization: -26.20 SS G_CDS: 0.74 Total: -25.46 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.38 Total: -6.90 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.07 -7.01 -35.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259867115.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.556 kcal (2) G-P(sol) polarization free energy of solvation -28.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds