Wall clock time and date at job start Mon Mar 30 2020 02:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47446 * 110.99596 * 2 1 4 4 C 1.54323 * 107.23311 * 236.74283 * 3 2 1 5 5 C 1.55139 * 103.01807 * 337.71984 * 4 3 2 6 6 C 1.47843 * 110.99813 * 239.16248 * 2 1 3 7 7 H 1.09000 * 110.37677 * 27.41942 * 6 2 1 8 8 C 1.53003 * 110.37346 * 265.18960 * 6 2 1 9 9 C 1.50703 * 109.47294 * 174.58144 * 8 6 2 10 10 O 1.21273 * 119.99925 * 354.04196 * 9 8 6 11 11 N 1.34771 * 119.99700 * 174.03647 * 9 8 6 12 12 C 1.46495 * 119.99730 * 180.02562 * 11 9 8 13 13 C 1.50707 * 109.47158 * 180.02562 * 12 11 9 14 14 H 1.07995 * 119.99883 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99948 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99978 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99976 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.46862 * 90.00160 * 17 15 13 19 19 H 1.48506 * 109.46854 * 209.99656 * 17 15 13 20 20 H 1.48492 * 109.47252 * 330.00024 * 17 15 13 21 21 H 1.08995 * 109.47764 * 58.36035 * 1 2 3 22 22 H 1.09003 * 109.46885 * 178.36860 * 1 2 3 23 23 H 1.09004 * 109.47052 * 298.35896 * 1 2 3 24 24 H 1.08996 * 109.89087 * 356.15201 * 3 2 1 25 25 H 1.08999 * 109.88698 * 117.34279 * 3 2 1 26 26 H 1.09002 * 110.70136 * 96.09972 * 4 3 2 27 27 H 1.08996 * 110.70736 * 219.33448 * 4 3 2 28 28 H 1.09000 * 110.99057 * 277.55722 * 5 4 3 29 29 H 1.09001 * 110.99043 * 153.74479 * 5 4 3 30 30 H 1.08998 * 109.46952 * 294.58763 * 8 6 2 31 31 H 1.08999 * 109.46843 * 54.58075 * 8 6 2 32 32 H 0.97004 * 120.00177 * 0.02562 * 11 9 8 33 33 H 1.09005 * 109.47219 * 299.99800 * 12 11 9 34 34 H 1.08996 * 109.47466 * 60.00469 * 12 11 9 35 35 H 0.96992 * 120.00035 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3766 0.0000 4 6 2.9157 1.5138 -1.2325 5 6 3.3046 0.0446 -1.5439 6 6 1.9988 -0.7075 -1.1851 7 1 1.2880 -0.6517 -2.0096 8 6 2.3019 -2.1675 -0.8424 9 6 2.7132 -2.9020 -2.0925 10 8 2.6559 -2.3463 -3.1689 11 7 3.1449 -4.1763 -2.0140 12 6 3.5453 -4.8900 -3.2291 13 6 3.9834 -6.2866 -2.8700 14 1 3.9649 -6.6102 -1.8398 15 6 4.4067 -7.1515 -3.8569 16 7 4.7894 -8.3701 -3.5435 17 14 4.4379 -6.5919 -5.6388 18 1 5.7602 -5.9896 -5.9453 19 1 4.2074 -7.7587 -6.5281 20 1 3.3711 -5.5829 -5.8595 21 1 -0.3634 0.5390 -0.8748 22 1 -0.3633 -1.0273 -0.0293 23 1 -0.3633 0.4882 0.9044 24 1 1.1754 2.0892 -0.0688 25 1 2.5697 1.5540 0.9105 26 1 2.3742 1.9547 -2.0695 27 1 3.7999 2.1035 -0.9906 28 1 4.1302 -0.2831 -0.9120 29 1 3.5494 -0.0794 -2.5988 30 1 3.1113 -2.2091 -0.1136 31 1 1.4109 -2.6348 -0.4230 32 1 3.1905 -4.6208 -1.1531 33 1 2.7006 -4.9400 -3.9162 34 1 4.3707 -4.3614 -3.7058 35 1 5.0868 -8.9786 -4.2377 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259873049.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:43 Heat of formation + Delta-G solvation = -43.950089 kcal Electronic energy + Delta-G solvation = -15658.001824 eV Core-core repulsion = 13076.412366 eV Total energy + Delta-G solvation = -2581.589458 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.66081 -38.24993 -34.28346 -32.37531 -32.10225 -31.53867 -28.17032 -26.15312 -25.29818 -22.13094 -21.15161 -20.27260 -19.54584 -17.34943 -16.35946 -15.66319 -15.45642 -15.05329 -14.84111 -14.07969 -13.97756 -13.43103 -13.38765 -12.83894 -12.63012 -12.34817 -12.26781 -11.77772 -11.59980 -11.27387 -11.13961 -10.99911 -10.76026 -10.67937 -10.58224 -9.96619 -9.48418 -9.16443 -8.76926 -8.42639 -8.11843 -6.20710 -4.22767 3.25650 3.29768 3.33528 3.42064 3.67475 4.32526 4.36417 4.57295 4.67581 4.91540 5.14384 5.15453 5.26253 5.33664 5.38901 5.42208 5.58067 5.64813 5.74696 5.77995 5.87736 5.96301 6.07904 6.20413 6.25951 6.82699 6.89652 7.00127 7.08677 7.25640 7.41474 8.15447 8.54721 8.76692 8.97266 9.39727 10.91357 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.053969 B = 0.005244 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.693769 B = 5338.325664 C = 5552.397733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.535 5.535 3 C 0.044 3.956 4 C -0.144 4.144 5 C -0.122 4.122 6 C 0.088 3.912 7 H 0.066 0.934 8 C -0.125 4.125 9 C 0.501 3.499 10 O -0.562 6.562 11 N -0.706 5.706 12 C 0.220 3.780 13 C -0.543 4.543 14 H 0.080 0.920 15 C 0.077 3.923 16 N -0.893 5.893 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.261 1.261 21 H 0.026 0.974 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.052 0.948 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.397 0.603 33 H 0.024 0.976 34 H 0.020 0.980 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.902 17.016 7.066 19.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.259 5.259 3 C -0.084 4.084 4 C -0.182 4.182 5 C -0.160 4.160 6 C -0.020 4.020 7 H 0.084 0.916 8 C -0.166 4.166 9 C 0.286 3.714 10 O -0.442 6.442 11 N -0.354 5.354 12 C 0.098 3.902 13 C -0.581 4.581 14 H 0.098 0.902 15 C -0.126 4.126 16 N -0.530 5.530 17 Si 0.703 3.297 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.186 1.186 21 H 0.044 0.956 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.230 0.770 33 H 0.042 0.958 34 H 0.038 0.962 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.721 16.952 6.669 19.094 hybrid contribution -0.218 0.228 -1.185 1.227 sum -5.939 17.180 5.483 18.987 Atomic orbital electron populations 1.22530 0.87800 1.02131 1.00356 1.63391 1.07763 1.13960 1.40821 1.22797 0.97838 0.89173 0.98584 1.22792 0.99771 0.97823 0.97814 1.22743 0.96946 0.93445 1.02850 1.22254 0.96609 0.92575 0.90561 0.91564 1.21530 1.03420 0.94856 0.96746 1.20529 0.77880 0.82457 0.90567 1.90623 1.55525 1.67638 1.30379 1.46196 1.64448 1.12484 1.12318 1.19475 0.95148 0.92037 0.83566 1.21115 1.45480 0.94948 0.96579 0.90236 1.24800 0.94051 0.94572 0.99206 1.69881 1.43311 1.05910 1.33925 0.86813 0.79539 0.78724 0.84583 1.19858 1.20912 1.18556 0.95572 0.91304 0.91522 0.92944 0.90573 0.91650 0.90843 0.90890 0.89713 0.88816 0.89187 0.76950 0.95822 0.96223 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.10 60.06 0.55 0.75 16 2 N -0.54 -6.29 5.10 -231.60 -1.18 -7.47 16 3 C 0.04 0.44 6.90 -2.83 -0.02 0.42 16 4 C -0.14 -1.50 6.94 -24.91 -0.17 -1.68 16 5 C -0.12 -1.60 5.93 -24.59 -0.15 -1.75 16 6 C 0.09 1.20 2.06 -66.19 -0.14 1.07 16 7 H 0.07 1.01 7.46 -51.93 -0.39 0.63 16 8 C -0.12 -1.77 5.53 -27.88 -0.15 -1.92 16 9 C 0.50 9.46 7.59 -10.99 -0.08 9.38 16 10 O -0.56 -12.47 14.94 5.56 0.08 -12.39 16 11 N -0.71 -14.39 5.55 -61.47 -0.34 -14.73 16 12 C 0.22 5.46 4.50 -5.19 -0.02 5.43 16 13 C -0.54 -15.01 9.83 -34.44 -0.34 -15.35 16 14 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 15 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 16 N -0.89 -26.64 13.96 55.43 0.77 -25.86 16 17 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 21 H 0.03 0.26 8.13 -51.93 -0.42 -0.16 16 22 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.47 7.58 -51.93 -0.39 0.08 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.94 7.97 -51.93 -0.41 0.53 16 29 H 0.08 1.28 7.50 -51.93 -0.39 0.89 16 30 H 0.09 1.21 8.02 -51.93 -0.42 0.79 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.40 7.16 8.32 -40.82 -0.34 6.82 16 33 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 34 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 35 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 286.36 15.07 4.32 4.32 Total: -1.00 -31.29 286.36 -7.29 -38.58 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -5.64 Total: 2.19 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -0.62 Total: -1.53 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.75 Total: -48.06 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.08 Total: -12.39 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.29 -7.29 -38.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259873049.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.368 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds