Wall clock time and date at job start Mon Mar 30 2020 02:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47446 * 110.99596 * 2 1 4 4 C 1.54323 * 107.23311 * 236.74283 * 3 2 1 5 5 C 1.55139 * 103.01807 * 337.71984 * 4 3 2 6 6 C 1.47843 * 110.99813 * 239.16248 * 2 1 3 7 7 H 1.09000 * 110.37677 * 27.41942 * 6 2 1 8 8 C 1.53003 * 110.37346 * 265.18960 * 6 2 1 9 9 C 1.50703 * 109.47294 * 174.58144 * 8 6 2 10 10 O 1.21273 * 119.99925 * 354.04196 * 9 8 6 11 11 N 1.34771 * 119.99700 * 174.03647 * 9 8 6 12 12 C 1.46495 * 119.99730 * 180.02562 * 11 9 8 13 13 C 1.50707 * 109.47158 * 180.02562 * 12 11 9 14 14 H 1.07995 * 119.99883 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99948 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99978 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99976 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.46862 * 90.00160 * 17 15 13 19 19 H 1.48506 * 109.46854 * 209.99656 * 17 15 13 20 20 H 1.48492 * 109.47252 * 330.00024 * 17 15 13 21 21 H 1.08995 * 109.47764 * 58.36035 * 1 2 3 22 22 H 1.09003 * 109.46885 * 178.36860 * 1 2 3 23 23 H 1.09004 * 109.47052 * 298.35896 * 1 2 3 24 24 H 1.08996 * 109.89087 * 356.15201 * 3 2 1 25 25 H 1.08999 * 109.88698 * 117.34279 * 3 2 1 26 26 H 1.09002 * 110.70136 * 96.09972 * 4 3 2 27 27 H 1.08996 * 110.70736 * 219.33448 * 4 3 2 28 28 H 1.09000 * 110.99057 * 277.55722 * 5 4 3 29 29 H 1.09001 * 110.99043 * 153.74479 * 5 4 3 30 30 H 1.08998 * 109.46952 * 294.58763 * 8 6 2 31 31 H 1.08999 * 109.46843 * 54.58075 * 8 6 2 32 32 H 0.97004 * 120.00177 * 0.02562 * 11 9 8 33 33 H 1.09005 * 109.47219 * 299.99800 * 12 11 9 34 34 H 1.08996 * 109.47466 * 60.00469 * 12 11 9 35 35 H 0.96992 * 120.00035 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3766 0.0000 4 6 2.9157 1.5138 -1.2325 5 6 3.3046 0.0446 -1.5439 6 6 1.9988 -0.7075 -1.1851 7 1 1.2880 -0.6517 -2.0096 8 6 2.3019 -2.1675 -0.8424 9 6 2.7132 -2.9020 -2.0925 10 8 2.6559 -2.3463 -3.1689 11 7 3.1449 -4.1763 -2.0140 12 6 3.5453 -4.8900 -3.2291 13 6 3.9834 -6.2866 -2.8700 14 1 3.9649 -6.6102 -1.8398 15 6 4.4067 -7.1515 -3.8569 16 7 4.7894 -8.3701 -3.5435 17 14 4.4379 -6.5919 -5.6388 18 1 5.7602 -5.9896 -5.9453 19 1 4.2074 -7.7587 -6.5281 20 1 3.3711 -5.5829 -5.8595 21 1 -0.3634 0.5390 -0.8748 22 1 -0.3633 -1.0273 -0.0293 23 1 -0.3633 0.4882 0.9044 24 1 1.1754 2.0892 -0.0688 25 1 2.5697 1.5540 0.9105 26 1 2.3742 1.9547 -2.0695 27 1 3.7999 2.1035 -0.9906 28 1 4.1302 -0.2831 -0.9120 29 1 3.5494 -0.0794 -2.5988 30 1 3.1113 -2.2091 -0.1136 31 1 1.4109 -2.6348 -0.4230 32 1 3.1905 -4.6208 -1.1531 33 1 2.7006 -4.9400 -3.9162 34 1 4.3707 -4.3614 -3.7058 35 1 5.0868 -8.9786 -4.2377 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259873049.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:43 Heat of formation + Delta-G solvation = -67.380446 kcal Electronic energy + Delta-G solvation = -15659.017841 eV Core-core repulsion = 13076.412366 eV Total energy + Delta-G solvation = -2582.605475 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.94948 -39.50465 -36.14972 -34.40646 -33.04492 -32.68140 -30.01303 -27.27937 -26.27558 -24.02840 -22.14210 -21.61883 -20.82366 -19.16290 -17.90059 -17.10266 -16.77413 -16.44893 -16.24713 -15.72813 -14.98465 -14.84342 -14.66054 -14.29824 -14.10282 -13.92414 -13.42527 -13.13905 -13.00495 -12.68304 -12.44312 -12.18555 -12.02481 -11.93971 -11.67729 -11.64835 -11.56009 -10.92199 -10.77795 -9.90873 -9.32811 -8.40286 -6.47273 1.32120 1.34257 1.46819 1.75804 2.27534 2.38433 2.95077 3.15158 3.65241 3.71702 4.00345 4.11058 4.22517 4.40577 4.44626 4.54326 4.58941 4.75364 4.79606 4.80818 4.92037 5.00827 5.01892 5.04072 5.11914 5.17093 5.26440 5.33471 5.54585 5.97486 6.08943 6.13689 6.54095 6.86319 7.15646 7.43077 8.74606 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.053969 B = 0.005244 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.693769 B = 5338.325664 C = 5552.397733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.539 5.539 3 C 0.043 3.957 4 C -0.137 4.137 5 C -0.126 4.126 6 C 0.090 3.910 7 H 0.045 0.955 8 C -0.112 4.112 9 C 0.501 3.499 10 O -0.595 6.595 11 N -0.707 5.707 12 C 0.232 3.768 13 C -0.547 4.547 14 H 0.059 0.941 15 C 0.027 3.973 16 N -0.931 5.931 17 Si 0.938 3.062 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.262 1.262 21 H 0.025 0.975 22 H 0.067 0.933 23 H 0.085 0.915 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.409 0.591 33 H 0.011 0.989 34 H 0.011 0.989 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.349 18.621 7.727 21.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.263 5.263 3 C -0.084 4.084 4 C -0.176 4.176 5 C -0.164 4.164 6 C -0.019 4.019 7 H 0.063 0.937 8 C -0.152 4.152 9 C 0.289 3.711 10 O -0.477 6.477 11 N -0.357 5.357 12 C 0.108 3.892 13 C -0.585 4.585 14 H 0.077 0.923 15 C -0.174 4.174 16 N -0.570 5.570 17 Si 0.762 3.238 18 H -0.189 1.189 19 H -0.198 1.198 20 H -0.186 1.186 21 H 0.043 0.957 22 H 0.086 0.914 23 H 0.104 0.896 24 H 0.085 0.915 25 H 0.106 0.894 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.131 0.869 31 H 0.127 0.873 32 H 0.244 0.756 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.177 18.571 7.364 20.911 hybrid contribution -0.100 -0.258 -1.321 1.349 sum -6.277 18.313 6.044 20.280 Atomic orbital electron populations 1.22605 0.86808 1.02370 1.01243 1.63389 1.08746 1.14882 1.39262 1.22888 0.98307 0.88526 0.98701 1.22775 1.00601 0.96097 0.98085 1.22716 0.96911 0.95594 1.01218 1.22143 0.96462 0.92501 0.90808 0.93715 1.21487 1.04717 0.94717 0.94276 1.21327 0.76415 0.81628 0.91736 1.90611 1.56622 1.68177 1.32264 1.46073 1.64956 1.13144 1.11529 1.19078 0.94194 0.90872 0.85072 1.21315 1.45111 0.96306 0.95802 0.92272 1.25604 0.93736 0.94597 1.03434 1.69982 1.44458 1.07083 1.35508 0.85851 0.79745 0.78535 0.79710 1.18946 1.19761 1.18597 0.95685 0.91445 0.89631 0.91511 0.89406 0.91767 0.89144 0.90622 0.92360 0.86899 0.87277 0.75573 0.97122 0.97125 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.10 127.69 1.16 1.48 16 2 N -0.54 -11.29 5.10 -886.63 -4.52 -15.81 16 3 C 0.04 0.75 6.90 86.65 0.60 1.34 16 4 C -0.14 -2.59 6.94 31.78 0.22 -2.37 16 5 C -0.13 -3.19 5.93 31.98 0.19 -3.00 16 6 C 0.09 2.32 2.06 45.39 0.09 2.41 16 7 H 0.04 1.35 7.46 -2.39 -0.02 1.33 16 8 C -0.11 -2.96 5.53 29.85 0.17 -2.80 16 9 C 0.50 18.62 7.59 87.66 0.67 19.28 16 10 O -0.59 -26.47 14.94 -3.01 -0.04 -26.52 16 11 N -0.71 -28.51 5.55 -466.80 -2.59 -31.10 16 12 C 0.23 11.50 4.50 85.64 0.38 11.88 16 13 C -0.55 -30.51 9.83 25.60 0.25 -30.26 16 14 H 0.06 3.46 7.84 -2.91 -0.02 3.43 16 15 C 0.03 1.51 5.47 84.65 0.46 1.98 16 16 N -0.93 -55.94 13.96 21.45 0.30 -55.64 16 17 Si 0.94 44.38 27.47 68.60 1.88 46.27 16 18 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 20 H -0.26 -12.31 6.54 99.48 0.65 -11.66 16 21 H 0.02 0.45 8.13 -2.39 -0.02 0.43 16 22 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 23 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 24 H 0.07 0.98 7.58 -2.39 -0.02 0.96 16 25 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.08 1.84 7.97 -2.39 -0.02 1.82 16 29 H 0.06 1.77 7.50 -2.39 -0.02 1.75 16 30 H 0.11 2.62 8.02 -2.39 -0.02 2.60 16 31 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.41 14.45 8.32 -92.71 -0.77 13.68 16 33 H 0.01 0.57 7.20 -2.38 -0.02 0.55 16 34 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 35 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -66.67 286.36 -0.54 -67.21 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.24 Total: 15.65 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 4.19 Total: -0.05 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -6.81 Total: -102.55 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.04 Total: -26.52 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.27 kcal Total: -66.67 -0.54 -67.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259873049.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.172 kcal (2) G-P(sol) polarization free energy of solvation -66.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds