Wall clock time and date at job start Mon Mar 30 2020 02:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37091 * 120.00225 * 2 1 4 4 H 1.08000 * 120.00383 * 202.40545 * 3 2 1 5 5 C 1.38949 * 120.00014 * 22.41452 * 3 2 1 6 6 N 1.31413 * 119.99988 * 11.58745 * 5 3 2 7 7 Si 1.86803 * 120.00077 * 191.59236 * 5 3 2 8 8 H 1.48502 * 109.46834 * 59.99818 * 7 5 3 9 9 H 1.48499 * 109.47173 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46914 * 299.99845 * 7 5 3 11 11 C 1.34781 * 119.99492 * 180.02562 * 2 1 3 12 12 O 1.21297 * 119.99535 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00087 * 359.97438 * 11 2 1 14 14 C 1.53004 * 109.46837 * 180.02562 * 13 11 2 15 15 H 1.08995 * 110.64536 * 51.84300 * 14 13 11 16 16 C 1.54594 * 110.72194 * 175.00030 * 14 13 11 17 17 C 1.54001 * 105.13958 * 140.49049 * 16 14 13 18 18 N 1.47910 * 107.05755 * 1.22592 * 17 16 14 19 19 C 1.46896 * 110.99607 * 214.15910 * 18 17 16 20 20 C 1.48541 * 105.81762 * 334.66653 * 18 17 16 21 21 H 1.09004 * 109.47128 * 272.16084 * 1 2 3 22 22 H 1.09004 * 109.47109 * 32.14996 * 1 2 3 23 23 H 1.08995 * 109.47647 * 152.15715 * 1 2 3 24 24 H 0.97000 * 119.99642 * 180.02562 * 6 5 3 25 25 H 1.08997 * 109.46960 * 60.00034 * 13 11 2 26 26 H 1.08997 * 109.47095 * 299.99514 * 13 11 2 27 27 H 1.08996 * 110.30875 * 21.58036 * 16 14 13 28 28 H 1.08998 * 110.39117 * 259.44435 * 16 14 13 29 29 H 1.08993 * 109.91527 * 120.57487 * 17 16 14 30 30 H 1.09003 * 109.91695 * 241.87158 * 17 16 14 31 31 H 1.08994 * 109.47849 * 59.86780 * 19 18 17 32 32 H 1.09005 * 109.47008 * 179.87448 * 19 18 17 33 33 H 1.09003 * 109.46805 * 299.86700 * 19 18 17 34 34 H 1.09000 * 110.66627 * 280.77234 * 20 18 17 35 35 H 1.09000 * 110.66561 * 157.64294 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1694 1.2226 -0.3565 5 6 1.5345 2.3451 0.4588 6 7 0.3897 2.2706 1.0997 7 14 2.3338 4.0077 0.1646 8 1 2.4816 4.2344 -1.2956 9 1 1.4827 5.0761 0.7473 10 1 3.6720 4.0343 0.8077 11 6 2.1388 -1.1673 -0.0005 12 8 3.3518 -1.1673 -0.0010 13 6 1.3852 -2.4723 -0.0005 14 6 2.3795 -3.6353 -0.0005 15 1 3.1082 -3.5179 0.8015 16 6 1.6400 -4.9871 0.1255 17 6 2.3894 -5.9450 -0.8192 18 7 3.5055 -5.1801 -1.4168 19 6 3.7595 -5.6119 -2.7977 20 6 3.0890 -3.7550 -1.3727 21 1 -0.3633 0.0387 1.0270 22 1 -0.3633 0.8701 -0.5469 23 1 -0.3634 -0.9086 -0.4799 24 1 -0.0404 3.0790 1.4197 25 1 0.7582 -2.5298 -0.8903 26 1 0.7590 -2.5303 0.8897 27 1 0.6018 -4.8811 -0.1889 28 1 1.6888 -5.3525 1.1512 29 1 2.7797 -6.7923 -0.2557 30 1 1.7173 -6.2947 -1.6030 31 1 2.8640 -5.4539 -3.3985 32 1 4.5833 -5.0319 -3.2139 33 1 4.0201 -6.6703 -2.8053 34 1 2.3969 -3.5312 -2.1846 35 1 3.9582 -3.0987 -1.4149 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259875324.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:43 Heat of formation + Delta-G solvation = -27.159491 kcal Electronic energy + Delta-G solvation = -16065.033438 eV Core-core repulsion = 13484.172075 eV Total energy + Delta-G solvation = -2580.861363 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.19529 -37.87739 -34.66633 -32.92573 -31.53716 -29.58790 -27.22937 -26.12105 -24.97658 -23.69668 -20.88197 -20.14050 -18.58825 -16.81631 -16.23319 -15.50847 -15.10764 -14.71155 -14.42411 -13.91925 -13.80647 -13.48052 -12.90265 -12.42054 -12.07338 -11.81727 -11.58102 -11.38030 -11.23903 -11.20048 -11.05633 -10.87315 -10.77181 -10.36794 -10.34441 -10.24382 -10.08216 -8.97684 -8.30303 -8.26951 -7.62699 -6.26667 -3.82988 3.21487 3.26467 3.30718 3.96730 4.15284 4.22322 4.81187 4.88001 4.99480 5.17292 5.22460 5.43719 5.49323 5.51536 5.71143 5.77551 5.87468 5.92998 5.95105 6.05483 6.08455 6.16919 6.31810 6.43136 6.60756 6.75122 6.91540 7.06391 7.19722 7.25724 7.60534 8.18557 8.54340 9.24700 9.49169 10.05731 10.77158 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.051898 B = 0.006122 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.391486 B = 4572.324456 C = 4899.246599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.451 5.451 3 C -0.305 4.305 4 H 0.097 0.903 5 C 0.029 3.971 6 N -0.886 5.886 7 Si 0.926 3.074 8 H -0.275 1.275 9 H -0.285 1.285 10 H -0.273 1.273 11 C 0.446 3.554 12 O -0.587 6.587 13 C -0.122 4.122 14 C -0.068 4.068 15 H 0.090 0.910 16 C -0.130 4.130 17 C 0.036 3.964 18 N -0.526 5.526 19 C 0.018 3.982 20 C 0.047 3.953 21 H 0.057 0.943 22 H 0.067 0.933 23 H 0.025 0.975 24 H 0.267 0.733 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.024 0.976 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.038 0.962 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.823 -11.565 -4.144 12.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.170 5.170 3 C -0.433 4.433 4 H 0.115 0.885 5 C -0.174 4.174 6 N -0.526 5.526 7 Si 0.753 3.247 8 H -0.200 1.200 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.234 3.766 12 O -0.472 6.472 13 C -0.163 4.163 14 C -0.088 4.088 15 H 0.108 0.892 16 C -0.169 4.169 17 C -0.092 4.092 18 N -0.250 5.250 19 C -0.131 4.131 20 C -0.080 4.080 21 H 0.075 0.925 22 H 0.086 0.914 23 H 0.044 0.956 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.893 -11.493 -3.785 12.133 hybrid contribution -0.732 1.028 -0.563 1.382 sum -1.625 -10.464 -4.348 11.447 Atomic orbital electron populations 1.21481 0.81303 0.98626 1.01608 1.43610 1.05445 1.04888 1.63049 1.19609 0.99410 0.83986 1.40276 0.88498 1.25326 0.96542 1.00012 0.95495 1.69993 1.17449 1.29242 1.35931 0.85999 0.79018 0.80990 0.78679 1.20012 1.20999 1.19821 1.20077 0.88138 0.84840 0.83508 1.90503 1.13928 1.87151 1.55618 1.21586 0.98331 0.93812 1.02524 1.21746 0.96682 0.91975 0.98386 0.89211 1.22522 0.99033 0.95470 0.99828 1.22851 0.91870 0.97203 0.97277 1.64761 1.38464 1.04100 1.17671 1.22481 1.00443 1.00977 0.89233 1.23309 1.00046 0.88459 0.96221 0.92495 0.91447 0.95640 0.92321 0.90824 0.90176 0.91546 0.91096 0.90787 0.94226 0.95728 0.91329 0.91794 0.94400 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.56 8.52 59.85 0.51 3.07 16 2 N -0.45 -11.69 3.02 -122.19 -0.37 -12.06 16 3 C -0.30 -8.62 9.29 -14.94 -0.14 -8.76 16 4 H 0.10 2.86 7.41 -52.49 -0.39 2.47 16 5 C 0.03 0.77 5.11 -17.47 -0.09 0.68 16 6 N -0.89 -23.92 10.62 55.50 0.59 -23.33 16 7 Si 0.93 21.06 29.57 -169.99 -5.03 16.03 16 8 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 C 0.45 10.84 7.46 -10.98 -0.08 10.76 16 12 O -0.59 -16.09 14.54 5.54 0.08 -16.01 16 13 C -0.12 -2.22 3.61 -27.88 -0.10 -2.32 16 14 C -0.07 -1.15 2.61 -88.75 -0.23 -1.39 16 15 H 0.09 1.71 7.88 -51.93 -0.41 1.30 16 16 C -0.13 -1.71 6.51 -25.37 -0.17 -1.88 16 17 C 0.04 0.46 6.70 -2.75 -0.02 0.44 16 18 N -0.53 -7.80 5.55 -238.70 -1.33 -9.12 16 19 C 0.02 0.21 9.40 60.06 0.56 0.78 16 20 C 0.05 0.79 5.47 -1.89 -0.01 0.78 16 21 H 0.06 1.33 7.54 -51.93 -0.39 0.94 16 22 H 0.07 1.60 7.06 -51.93 -0.37 1.23 16 23 H 0.03 0.47 6.36 -51.93 -0.33 0.14 16 24 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 25 H 0.07 1.22 7.27 -51.93 -0.38 0.84 16 26 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 27 H 0.07 0.79 7.85 -51.93 -0.41 0.38 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.04 0.45 7.73 -51.93 -0.40 0.05 16 31 H 0.02 0.28 8.00 -51.93 -0.42 -0.13 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.04 0.62 7.78 -51.93 -0.40 0.22 16 35 H 0.10 1.87 7.41 -51.93 -0.38 1.49 16 LS Contribution 280.55 15.07 4.23 4.23 Total: -1.00 -30.61 280.55 -7.11 -37.72 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.52 Total: 0.38 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 0.24 Total: 2.16 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: -1.11 Total: -44.52 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.08 Total: -16.01 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.61 -7.11 -37.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259875324.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.560 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds