Wall clock time and date at job start Mon Mar 30 2020 02:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37091 * 120.00225 * 2 1 4 4 H 1.08000 * 120.00383 * 202.40545 * 3 2 1 5 5 C 1.38949 * 120.00014 * 22.41452 * 3 2 1 6 6 N 1.31413 * 119.99988 * 11.58745 * 5 3 2 7 7 Si 1.86803 * 120.00077 * 191.59236 * 5 3 2 8 8 H 1.48502 * 109.46834 * 59.99818 * 7 5 3 9 9 H 1.48499 * 109.47173 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46914 * 299.99845 * 7 5 3 11 11 C 1.34781 * 119.99492 * 180.02562 * 2 1 3 12 12 O 1.21297 * 119.99535 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00087 * 359.97438 * 11 2 1 14 14 C 1.53004 * 109.46837 * 180.02562 * 13 11 2 15 15 H 1.08995 * 110.64536 * 51.84300 * 14 13 11 16 16 C 1.54594 * 110.72194 * 175.00030 * 14 13 11 17 17 C 1.54001 * 105.13958 * 140.49049 * 16 14 13 18 18 N 1.47910 * 107.05755 * 1.22592 * 17 16 14 19 19 C 1.46896 * 110.99607 * 214.15910 * 18 17 16 20 20 C 1.48541 * 105.81762 * 334.66653 * 18 17 16 21 21 H 1.09004 * 109.47128 * 272.16084 * 1 2 3 22 22 H 1.09004 * 109.47109 * 32.14996 * 1 2 3 23 23 H 1.08995 * 109.47647 * 152.15715 * 1 2 3 24 24 H 0.97000 * 119.99642 * 180.02562 * 6 5 3 25 25 H 1.08997 * 109.46960 * 60.00034 * 13 11 2 26 26 H 1.08997 * 109.47095 * 299.99514 * 13 11 2 27 27 H 1.08996 * 110.30875 * 21.58036 * 16 14 13 28 28 H 1.08998 * 110.39117 * 259.44435 * 16 14 13 29 29 H 1.08993 * 109.91527 * 120.57487 * 17 16 14 30 30 H 1.09003 * 109.91695 * 241.87158 * 17 16 14 31 31 H 1.08994 * 109.47849 * 59.86780 * 19 18 17 32 32 H 1.09005 * 109.47008 * 179.87448 * 19 18 17 33 33 H 1.09003 * 109.46805 * 299.86700 * 19 18 17 34 34 H 1.09000 * 110.66627 * 280.77234 * 20 18 17 35 35 H 1.09000 * 110.66561 * 157.64294 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1694 1.2226 -0.3565 5 6 1.5345 2.3451 0.4588 6 7 0.3897 2.2706 1.0997 7 14 2.3338 4.0077 0.1646 8 1 2.4816 4.2344 -1.2956 9 1 1.4827 5.0761 0.7473 10 1 3.6720 4.0343 0.8077 11 6 2.1388 -1.1673 -0.0005 12 8 3.3518 -1.1673 -0.0010 13 6 1.3852 -2.4723 -0.0005 14 6 2.3795 -3.6353 -0.0005 15 1 3.1082 -3.5179 0.8015 16 6 1.6400 -4.9871 0.1255 17 6 2.3894 -5.9450 -0.8192 18 7 3.5055 -5.1801 -1.4168 19 6 3.7595 -5.6119 -2.7977 20 6 3.0890 -3.7550 -1.3727 21 1 -0.3633 0.0387 1.0270 22 1 -0.3633 0.8701 -0.5469 23 1 -0.3634 -0.9086 -0.4799 24 1 -0.0404 3.0790 1.4197 25 1 0.7582 -2.5298 -0.8903 26 1 0.7590 -2.5303 0.8897 27 1 0.6018 -4.8811 -0.1889 28 1 1.6888 -5.3525 1.1512 29 1 2.7797 -6.7923 -0.2557 30 1 1.7173 -6.2947 -1.6030 31 1 2.8640 -5.4539 -3.3985 32 1 4.5833 -5.0319 -3.2139 33 1 4.0201 -6.6703 -2.8053 34 1 2.3969 -3.5312 -2.1846 35 1 3.9582 -3.0987 -1.4149 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259875324.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:43 Heat of formation + Delta-G solvation = -48.444459 kcal Electronic energy + Delta-G solvation = -16065.956423 eV Core-core repulsion = 13484.172075 eV Total energy + Delta-G solvation = -2581.784349 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.73270 -39.41955 -36.64041 -34.29171 -33.52125 -30.79922 -28.73392 -27.84336 -26.47846 -25.29463 -22.09010 -21.45909 -20.29062 -18.85372 -17.87764 -17.06002 -16.45777 -16.31864 -16.08086 -15.68368 -15.13005 -14.64445 -14.31761 -14.01945 -13.59827 -13.39043 -13.15866 -12.99405 -12.94849 -12.65473 -12.43286 -12.30241 -12.18072 -12.12400 -11.98725 -11.67815 -11.37683 -10.99739 -10.25257 -9.65810 -9.37011 -8.31111 -5.96266 1.38984 1.40062 1.50714 2.08404 2.28795 3.02219 3.11495 3.21073 3.73349 3.76679 4.02068 4.19482 4.30572 4.45809 4.48070 4.52931 4.58828 4.71352 4.75139 4.82926 4.92845 4.97130 5.02236 5.07444 5.10145 5.32946 5.41379 5.42719 5.45597 5.93111 6.11913 6.15065 6.51905 7.20270 7.52302 8.09049 8.70393 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.051898 B = 0.006122 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.391486 B = 4572.324456 C = 4899.246599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.470 5.470 3 C -0.344 4.344 4 H 0.069 0.931 5 C -0.004 4.004 6 N -0.899 5.899 7 Si 0.988 3.012 8 H -0.268 1.268 9 H -0.269 1.269 10 H -0.278 1.278 11 C 0.435 3.565 12 O -0.629 6.629 13 C -0.108 4.108 14 C -0.070 4.070 15 H 0.058 0.942 16 C -0.120 4.120 17 C 0.036 3.964 18 N -0.544 5.544 19 C 0.017 3.983 20 C 0.052 3.948 21 H 0.045 0.955 22 H 0.049 0.951 23 H 0.070 0.930 24 H 0.272 0.728 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.033 0.967 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.042 0.958 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.362 -12.809 -4.504 13.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.189 5.189 3 C -0.473 4.473 4 H 0.087 0.913 5 C -0.205 4.205 6 N -0.538 5.538 7 Si 0.812 3.188 8 H -0.193 1.193 9 H -0.193 1.193 10 H -0.204 1.204 11 C 0.225 3.775 12 O -0.516 6.516 13 C -0.148 4.148 14 C -0.090 4.090 15 H 0.076 0.924 16 C -0.158 4.158 17 C -0.092 4.092 18 N -0.269 5.269 19 C -0.132 4.132 20 C -0.076 4.076 21 H 0.064 0.936 22 H 0.068 0.932 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.464 -12.755 -4.145 13.637 hybrid contribution -0.214 1.379 -0.442 1.463 sum -2.678 -11.377 -4.586 12.556 Atomic orbital electron populations 1.21433 0.79373 1.00081 1.01109 1.43910 1.06784 1.04797 1.63410 1.19567 0.99130 0.86097 1.42466 0.91332 1.26058 0.97047 1.02767 0.94640 1.70065 1.17907 1.30345 1.35463 0.85083 0.77941 0.77006 0.78814 1.19321 1.19343 1.20369 1.21191 0.88111 0.86435 0.81717 1.90475 1.16156 1.88054 1.56944 1.21556 0.98310 0.90418 1.04538 1.21678 0.96284 0.93812 0.97235 0.92382 1.22496 0.99612 0.92697 1.01015 1.22944 0.91483 0.97022 0.97704 1.64703 1.39762 1.02942 1.19474 1.22542 1.00637 1.02036 0.87971 1.23085 0.98434 0.89564 0.96533 0.93623 0.93173 0.91153 0.91791 0.88179 0.88224 0.89382 0.89825 0.89457 0.92309 0.94849 0.92033 0.89682 0.93941 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.43 8.52 127.77 1.09 6.52 16 2 N -0.47 -24.68 3.02 -658.88 -1.99 -26.67 16 3 C -0.34 -20.07 9.29 84.04 0.78 -19.29 16 4 H 0.07 4.28 7.41 -2.91 -0.02 4.25 16 5 C 0.00 -0.21 5.11 84.93 0.43 0.23 16 6 N -0.90 -48.34 10.62 21.66 0.23 -48.11 16 7 Si 0.99 43.36 29.57 68.60 2.03 45.39 16 8 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 9 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 C 0.44 21.47 7.46 87.66 0.65 22.13 16 12 O -0.63 -36.05 14.54 -3.08 -0.04 -36.10 16 13 C -0.11 -3.76 3.61 29.85 0.11 -3.65 16 14 C -0.07 -2.31 2.61 -9.59 -0.02 -2.33 16 15 H 0.06 2.26 7.88 -2.39 -0.02 2.24 16 16 C -0.12 -2.76 6.51 31.48 0.20 -2.56 16 17 C 0.04 0.79 6.70 86.45 0.58 1.37 16 18 N -0.54 -15.35 5.55 -909.10 -5.05 -20.40 16 19 C 0.02 0.37 9.40 127.69 1.20 1.57 16 20 C 0.05 1.74 5.47 86.65 0.47 2.22 16 21 H 0.05 2.09 7.54 -2.38 -0.02 2.07 16 22 H 0.05 2.35 7.06 -2.38 -0.02 2.33 16 23 H 0.07 2.41 6.36 -2.39 -0.02 2.40 16 24 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 25 H 0.10 2.99 7.27 -2.39 -0.02 2.97 16 26 H 0.10 3.11 8.11 -2.39 -0.02 3.09 16 27 H 0.09 1.68 7.85 -2.39 -0.02 1.66 16 28 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 1.09 7.73 -2.39 -0.02 1.07 16 31 H 0.03 0.69 8.00 -2.39 -0.02 0.67 16 32 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 34 H 0.04 1.36 7.78 -2.39 -0.02 1.34 16 35 H 0.05 2.25 7.41 -2.39 -0.02 2.23 16 Total: -1.00 -68.50 280.55 1.73 -66.78 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 1.05 Total: 12.90 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 5.50 Total: 6.20 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -6.81 Total: -95.17 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -0.04 Total: -36.10 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -68.50 1.73 -66.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259875324.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.332 kcal (2) G-P(sol) polarization free energy of solvation -68.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds