Wall clock time and date at job start Mon Mar 30 2020 02:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37105 * 119.99809 * 2 1 4 4 H 1.08004 * 119.99585 * 202.40965 * 3 2 1 5 5 C 1.38949 * 119.99952 * 22.41196 * 3 2 1 6 6 N 1.31410 * 120.00062 * 11.58916 * 5 3 2 7 7 Si 1.86800 * 119.99750 * 191.59236 * 5 3 2 8 8 H 1.48504 * 109.47246 * 60.00020 * 7 5 3 9 9 H 1.48503 * 109.47077 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47166 * 299.99803 * 7 5 3 11 11 C 1.34770 * 120.00199 * 180.02562 * 2 1 3 12 12 O 1.21288 * 120.00498 * 180.02562 * 11 2 1 13 13 C 1.50704 * 119.99683 * 359.97438 * 11 2 1 14 14 C 1.53007 * 109.46876 * 180.02562 * 13 11 2 15 15 H 1.08997 * 110.87728 * 308.84757 * 14 13 11 16 16 C 1.55138 * 110.98896 * 184.99878 * 14 13 11 17 17 C 1.54316 * 103.02210 * 206.21559 * 16 14 13 18 18 N 1.47447 * 107.22801 * 22.28918 * 17 16 14 19 19 C 1.46894 * 111.00199 * 123.25794 * 18 17 16 20 20 C 1.47840 * 108.56789 * 0.98486 * 18 17 16 21 21 H 1.08996 * 109.47134 * 272.15748 * 1 2 3 22 22 H 1.09007 * 109.47189 * 32.15395 * 1 2 3 23 23 H 1.08997 * 109.47242 * 152.15093 * 1 2 3 24 24 H 0.97006 * 119.99780 * 180.02562 * 6 5 3 25 25 H 1.08997 * 109.47086 * 60.00807 * 13 11 2 26 26 H 1.08995 * 109.47358 * 300.00470 * 13 11 2 27 27 H 1.09009 * 110.70279 * 87.83683 * 16 14 13 28 28 H 1.08998 * 110.85619 * 324.67375 * 16 14 13 29 29 H 1.08994 * 109.89153 * 262.88261 * 17 16 14 30 30 H 1.09003 * 109.88956 * 141.69032 * 17 16 14 31 31 H 1.09006 * 109.47368 * 59.87289 * 19 18 17 32 32 H 1.09000 * 109.47398 * 299.87336 * 19 18 17 33 33 H 1.09003 * 109.47626 * 179.86664 * 19 18 17 34 34 H 1.09000 * 110.37255 * 94.73959 * 20 18 17 35 35 H 1.09008 * 110.37175 * 217.07435 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1693 1.2227 -0.3566 5 6 1.5344 2.3452 0.4588 6 7 0.3896 2.2707 1.0996 7 14 2.3335 4.0078 0.1645 8 1 2.4814 4.2345 -1.2957 9 1 1.4824 5.0762 0.7471 10 1 3.6718 4.0346 0.8076 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1672 -0.0001 13 6 1.3853 -2.4722 -0.0005 14 6 2.3796 -3.6352 -0.0005 15 1 3.1176 -3.5153 -0.7937 16 6 1.6440 -4.9952 -0.1267 17 6 2.6194 -5.9821 0.5487 18 7 3.4811 -5.1960 1.4506 19 6 3.4004 -5.7001 2.8279 20 6 3.0673 -3.7784 1.3801 21 1 -0.3633 0.0387 1.0269 22 1 -0.3634 0.8701 -0.5470 23 1 -0.3633 -0.9086 -0.4800 24 1 -0.0407 3.0791 1.4196 25 1 0.7585 -2.5298 -0.8903 26 1 0.7590 -2.5302 0.8896 27 1 1.4950 -5.2570 -1.1744 28 1 0.6914 -4.9718 0.4025 29 1 3.2282 -6.4777 -0.2073 30 1 2.0605 -6.7222 1.1216 31 1 3.7225 -6.7412 2.8533 32 1 2.3716 -5.6294 3.1811 33 1 4.0473 -5.1041 3.4717 34 1 2.3637 -3.5483 2.1802 35 1 3.9381 -3.1254 1.4400 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259875351.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:46 Heat of formation + Delta-G solvation = -27.428028 kcal Electronic energy + Delta-G solvation = -16082.005798 eV Core-core repulsion = 13501.132791 eV Total energy + Delta-G solvation = -2580.873008 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.20942 -37.90071 -34.66890 -32.85302 -31.53658 -29.58777 -27.25577 -26.12089 -24.99382 -23.73350 -20.69396 -20.31041 -18.56832 -16.82376 -16.16445 -15.72587 -15.08729 -14.62537 -14.34199 -13.96043 -13.74065 -13.22398 -13.09682 -12.41163 -12.15840 -11.97886 -11.53782 -11.32071 -11.27468 -11.15030 -10.98908 -10.92051 -10.73920 -10.44575 -10.34830 -10.24590 -10.11753 -8.98219 -8.30421 -8.13100 -7.63218 -6.27065 -3.83418 3.21392 3.26334 3.30670 3.96208 4.14893 4.23168 4.78510 4.90173 4.95376 5.16532 5.24847 5.45591 5.51934 5.56051 5.68323 5.72929 5.90381 5.92855 5.94848 6.09290 6.12415 6.16434 6.21502 6.46525 6.63632 6.76034 6.91323 7.14509 7.25056 7.25569 7.60204 8.18212 8.53886 9.24260 9.48731 10.05194 10.76744 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.049763 B = 0.006114 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.535707 B = 4578.809762 C = 4752.135519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.451 5.451 3 C -0.305 4.305 4 H 0.097 0.903 5 C 0.029 3.971 6 N -0.887 5.887 7 Si 0.926 3.074 8 H -0.274 1.274 9 H -0.285 1.285 10 H -0.273 1.273 11 C 0.446 3.554 12 O -0.587 6.587 13 C -0.121 4.121 14 C -0.073 4.073 15 H 0.090 0.910 16 C -0.141 4.141 17 C 0.042 3.958 18 N -0.538 5.538 19 C 0.022 3.978 20 C 0.053 3.947 21 H 0.056 0.944 22 H 0.067 0.933 23 H 0.025 0.975 24 H 0.267 0.733 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.023 0.977 33 H 0.067 0.933 34 H 0.041 0.959 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.989 -11.705 -0.079 11.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.170 5.170 3 C -0.433 4.433 4 H 0.115 0.885 5 C -0.174 4.174 6 N -0.526 5.526 7 Si 0.753 3.247 8 H -0.200 1.200 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.234 3.766 12 O -0.472 6.472 13 C -0.161 4.161 14 C -0.093 4.093 15 H 0.109 0.891 16 C -0.180 4.180 17 C -0.086 4.086 18 N -0.262 5.262 19 C -0.127 4.127 20 C -0.074 4.074 21 H 0.074 0.926 22 H 0.086 0.914 23 H 0.044 0.956 24 H 0.077 0.923 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.024 -11.595 -0.128 11.641 hybrid contribution -0.838 0.994 0.316 1.338 sum -1.862 -10.601 0.188 10.765 Atomic orbital electron populations 1.21482 0.81301 0.98675 1.01573 1.43609 1.05447 1.04886 1.63040 1.19618 0.99419 0.83974 1.40255 0.88480 1.25326 0.96540 1.00023 0.95492 1.69993 1.17456 1.29248 1.35950 0.85997 0.79003 0.80965 0.78707 1.19978 1.21006 1.19826 1.20063 0.88135 0.84831 0.83535 1.90505 1.13921 1.87140 1.55607 1.21528 0.98300 0.93763 1.02547 1.21971 0.96795 0.92067 0.98424 0.89146 1.22884 0.98370 0.95636 1.01093 1.22803 0.93739 0.95788 0.96230 1.63603 1.52107 1.03348 1.07176 1.22507 0.99632 1.00450 0.90123 1.23118 1.00044 0.88069 0.96208 0.92553 0.91413 0.95599 0.92322 0.90394 0.90610 0.90906 0.91640 0.90801 0.93208 0.91855 0.95801 0.91464 0.94105 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.56 8.52 59.85 0.51 3.07 16 2 N -0.45 -11.69 3.02 -122.19 -0.37 -12.06 16 3 C -0.30 -8.62 9.29 -14.93 -0.14 -8.76 16 4 H 0.10 2.87 7.41 -52.48 -0.39 2.48 16 5 C 0.03 0.77 5.11 -17.47 -0.09 0.68 16 6 N -0.89 -23.93 10.62 55.50 0.59 -23.34 16 7 Si 0.93 21.06 29.57 -169.99 -5.03 16.03 16 8 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 C 0.45 10.85 7.48 -10.99 -0.08 10.77 16 12 O -0.59 -16.11 14.64 5.55 0.08 -16.02 16 13 C -0.12 -2.20 3.74 -27.88 -0.10 -2.31 16 14 C -0.07 -1.23 2.57 -88.48 -0.23 -1.45 16 15 H 0.09 1.69 7.87 -51.93 -0.41 1.28 16 16 C -0.14 -1.84 6.41 -24.91 -0.16 -2.00 16 17 C 0.04 0.54 6.90 -2.83 -0.02 0.52 16 18 N -0.54 -8.09 5.44 -239.52 -1.30 -9.39 16 19 C 0.02 0.27 9.12 60.06 0.55 0.82 16 20 C 0.05 0.91 5.70 -2.30 -0.01 0.90 16 21 H 0.06 1.32 7.54 -51.93 -0.39 0.93 16 22 H 0.07 1.61 7.06 -51.92 -0.37 1.24 16 23 H 0.03 0.48 6.36 -51.93 -0.33 0.14 16 24 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 25 H 0.08 1.27 7.40 -51.93 -0.38 0.89 16 26 H 0.08 1.31 7.93 -51.93 -0.41 0.90 16 27 H 0.07 0.84 8.14 -51.92 -0.42 0.41 16 28 H 0.06 0.80 8.04 -51.93 -0.42 0.38 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.55 7.58 -51.93 -0.39 0.16 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.02 0.28 8.10 -51.93 -0.42 -0.14 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.04 0.70 7.55 -51.93 -0.39 0.31 16 35 H 0.09 1.89 7.49 -51.92 -0.39 1.50 16 LS Contribution 280.65 15.07 4.23 4.23 Total: -1.00 -30.62 280.65 -7.10 -37.71 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.52 Total: 0.61 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 0.22 Total: 2.23 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: -1.08 Total: -44.79 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.08 Total: -16.02 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.62 -7.10 -37.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259875351.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.285 kcal (2) G-P(sol) polarization free energy of solvation -30.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds