Wall clock time and date at job start Mon Mar 30 2020 02:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37105 * 119.99809 * 2 1 4 4 H 1.08004 * 119.99585 * 202.40965 * 3 2 1 5 5 C 1.38949 * 119.99952 * 22.41196 * 3 2 1 6 6 N 1.31410 * 120.00062 * 11.58916 * 5 3 2 7 7 Si 1.86800 * 119.99750 * 191.59236 * 5 3 2 8 8 H 1.48504 * 109.47246 * 60.00020 * 7 5 3 9 9 H 1.48503 * 109.47077 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47166 * 299.99803 * 7 5 3 11 11 C 1.34770 * 120.00199 * 180.02562 * 2 1 3 12 12 O 1.21288 * 120.00498 * 180.02562 * 11 2 1 13 13 C 1.50704 * 119.99683 * 359.97438 * 11 2 1 14 14 C 1.53007 * 109.46876 * 180.02562 * 13 11 2 15 15 H 1.08997 * 110.87728 * 308.84757 * 14 13 11 16 16 C 1.55138 * 110.98896 * 184.99878 * 14 13 11 17 17 C 1.54316 * 103.02210 * 206.21559 * 16 14 13 18 18 N 1.47447 * 107.22801 * 22.28918 * 17 16 14 19 19 C 1.46894 * 111.00199 * 123.25794 * 18 17 16 20 20 C 1.47840 * 108.56789 * 0.98486 * 18 17 16 21 21 H 1.08996 * 109.47134 * 272.15748 * 1 2 3 22 22 H 1.09007 * 109.47189 * 32.15395 * 1 2 3 23 23 H 1.08997 * 109.47242 * 152.15093 * 1 2 3 24 24 H 0.97006 * 119.99780 * 180.02562 * 6 5 3 25 25 H 1.08997 * 109.47086 * 60.00807 * 13 11 2 26 26 H 1.08995 * 109.47358 * 300.00470 * 13 11 2 27 27 H 1.09009 * 110.70279 * 87.83683 * 16 14 13 28 28 H 1.08998 * 110.85619 * 324.67375 * 16 14 13 29 29 H 1.08994 * 109.89153 * 262.88261 * 17 16 14 30 30 H 1.09003 * 109.88956 * 141.69032 * 17 16 14 31 31 H 1.09006 * 109.47368 * 59.87289 * 19 18 17 32 32 H 1.09000 * 109.47398 * 299.87336 * 19 18 17 33 33 H 1.09003 * 109.47626 * 179.86664 * 19 18 17 34 34 H 1.09000 * 110.37255 * 94.73959 * 20 18 17 35 35 H 1.09008 * 110.37175 * 217.07435 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1693 1.2227 -0.3566 5 6 1.5344 2.3452 0.4588 6 7 0.3896 2.2707 1.0996 7 14 2.3335 4.0078 0.1645 8 1 2.4814 4.2345 -1.2957 9 1 1.4824 5.0762 0.7471 10 1 3.6718 4.0346 0.8076 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1672 -0.0001 13 6 1.3853 -2.4722 -0.0005 14 6 2.3796 -3.6352 -0.0005 15 1 3.1176 -3.5153 -0.7937 16 6 1.6440 -4.9952 -0.1267 17 6 2.6194 -5.9821 0.5487 18 7 3.4811 -5.1960 1.4506 19 6 3.4004 -5.7001 2.8279 20 6 3.0673 -3.7784 1.3801 21 1 -0.3633 0.0387 1.0269 22 1 -0.3634 0.8701 -0.5470 23 1 -0.3633 -0.9086 -0.4800 24 1 -0.0407 3.0791 1.4196 25 1 0.7585 -2.5298 -0.8903 26 1 0.7590 -2.5302 0.8896 27 1 1.4950 -5.2570 -1.1744 28 1 0.6914 -4.9718 0.4025 29 1 3.2282 -6.4777 -0.2073 30 1 2.0605 -6.7222 1.1216 31 1 3.7225 -6.7412 2.8533 32 1 2.3716 -5.6294 3.1811 33 1 4.0473 -5.1041 3.4717 34 1 2.3637 -3.5483 2.1802 35 1 3.9381 -3.1254 1.4400 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259875351.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:45 Heat of formation + Delta-G solvation = -48.678822 kcal Electronic energy + Delta-G solvation = -16082.927302 eV Core-core repulsion = 13501.132791 eV Total energy + Delta-G solvation = -2581.794511 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.74380 -39.46089 -36.64731 -34.24164 -33.51336 -30.79736 -28.77438 -27.85447 -26.49101 -25.34301 -21.94437 -21.60372 -20.29009 -18.86174 -17.81181 -17.26454 -16.37356 -16.28932 -16.11705 -15.72087 -15.01537 -14.54796 -14.28479 -14.03838 -13.79636 -13.28743 -13.26610 -13.04654 -12.92759 -12.67055 -12.43914 -12.36322 -12.18124 -12.08810 -11.96655 -11.65292 -11.47123 -11.00658 -10.26278 -9.66494 -9.25914 -8.31594 -5.96831 1.38802 1.39912 1.50587 2.07778 2.28510 3.00543 3.10764 3.19963 3.69721 3.77677 4.00514 4.15101 4.32370 4.46266 4.49349 4.53590 4.61949 4.68959 4.74022 4.80403 4.92563 4.96996 5.00639 5.04236 5.10197 5.32240 5.40513 5.44660 5.45250 5.99523 6.11634 6.19178 6.51294 7.19694 7.51728 8.08368 8.69893 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.049763 B = 0.006114 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.535707 B = 4578.809762 C = 4752.135519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.470 5.470 3 C -0.344 4.344 4 H 0.069 0.931 5 C -0.004 4.004 6 N -0.899 5.899 7 Si 0.988 3.012 8 H -0.268 1.268 9 H -0.269 1.269 10 H -0.278 1.278 11 C 0.435 3.565 12 O -0.629 6.629 13 C -0.107 4.107 14 C -0.075 4.075 15 H 0.064 0.936 16 C -0.128 4.128 17 C 0.041 3.959 18 N -0.556 5.556 19 C 0.021 3.979 20 C 0.057 3.943 21 H 0.044 0.956 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.272 0.728 25 H 0.107 0.893 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.032 0.968 33 H 0.058 0.942 34 H 0.039 0.961 35 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.537 -13.020 -0.250 13.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.189 5.189 3 C -0.472 4.472 4 H 0.087 0.913 5 C -0.205 4.205 6 N -0.538 5.538 7 Si 0.812 3.188 8 H -0.193 1.193 9 H -0.194 1.194 10 H -0.204 1.204 11 C 0.225 3.775 12 O -0.516 6.516 13 C -0.147 4.147 14 C -0.095 4.095 15 H 0.083 0.917 16 C -0.166 4.166 17 C -0.087 4.087 18 N -0.281 5.281 19 C -0.128 4.128 20 C -0.071 4.071 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.125 0.875 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.606 -12.929 -0.298 13.192 hybrid contribution -0.315 1.365 0.401 1.457 sum -2.920 -11.564 0.103 11.928 Atomic orbital electron populations 1.21436 0.79370 1.00161 1.01050 1.43910 1.06788 1.04801 1.63393 1.19575 0.99137 0.86085 1.42447 0.91311 1.26063 0.97045 1.02793 0.94635 1.70066 1.17923 1.30352 1.35490 0.85080 0.77916 0.76967 0.78861 1.19250 1.19356 1.20387 1.21180 0.88104 0.86437 0.81733 1.90476 1.16161 1.88051 1.56949 1.21494 0.98288 0.90384 1.04547 1.21912 0.96487 0.93951 0.97120 0.91727 1.22843 0.98475 0.92481 1.02795 1.22907 0.93731 0.95817 0.96207 1.63511 1.53242 1.02250 1.09048 1.22569 1.00107 1.01413 0.88668 1.22887 0.98186 0.89257 0.96721 0.93736 0.93123 0.91065 0.91793 0.87509 0.88930 0.88871 0.89940 0.90178 0.90782 0.89635 0.94938 0.92261 0.94240 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.43 8.52 127.77 1.09 6.52 16 2 N -0.47 -24.70 3.02 -658.89 -1.99 -26.69 16 3 C -0.34 -20.08 9.29 84.04 0.78 -19.30 16 4 H 0.07 4.29 7.41 -2.91 -0.02 4.27 16 5 C 0.00 -0.22 5.11 84.93 0.43 0.21 16 6 N -0.90 -48.43 10.62 21.66 0.23 -48.20 16 7 Si 0.99 43.39 29.57 68.60 2.03 45.42 16 8 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 9 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 C 0.44 21.49 7.48 87.66 0.66 22.15 16 12 O -0.63 -36.11 14.64 -3.05 -0.04 -36.15 16 13 C -0.11 -3.72 3.74 29.85 0.11 -3.61 16 14 C -0.07 -2.44 2.57 -9.41 -0.02 -2.47 16 15 H 0.06 2.43 7.87 -2.39 -0.02 2.42 16 16 C -0.13 -2.87 6.41 31.77 0.20 -2.66 16 17 C 0.04 0.91 6.90 86.64 0.60 1.50 16 18 N -0.56 -15.99 5.44 -911.71 -4.96 -20.95 16 19 C 0.02 0.48 9.12 127.69 1.16 1.64 16 20 C 0.06 1.99 5.70 86.77 0.50 2.49 16 21 H 0.04 2.05 7.54 -2.39 -0.02 2.03 16 22 H 0.05 2.38 7.06 -2.38 -0.02 2.36 16 23 H 0.07 2.44 6.36 -2.39 -0.02 2.43 16 24 H 0.27 13.76 8.31 -92.70 -0.77 12.99 16 25 H 0.11 3.12 7.40 -2.39 -0.02 3.10 16 26 H 0.09 2.96 7.93 -2.39 -0.02 2.94 16 27 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.08 1.62 8.04 -2.39 -0.02 1.60 16 29 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 1.32 7.58 -2.39 -0.02 1.30 16 31 H 0.08 1.58 8.14 -2.38 -0.02 1.57 16 32 H 0.03 0.69 8.10 -2.39 -0.02 0.67 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.04 1.35 7.55 -2.39 -0.02 1.33 16 35 H 0.05 2.13 7.49 -2.38 -0.02 2.11 16 Total: -1.00 -68.74 280.65 1.82 -66.92 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 1.05 Total: 13.18 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 5.51 Total: 6.47 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -6.72 Total: -95.83 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -0.04 Total: -36.15 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -68.74 1.82 -66.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259875351.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.238 kcal (2) G-P(sol) polarization free energy of solvation -68.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds