Wall clock time and date at job start Mon Mar 30 2020 03:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99288 * 2 1 4 4 C 1.34768 * 120.00415 * 180.02562 * 2 1 3 5 5 O 1.21592 * 120.00068 * 356.31969 * 4 2 1 6 6 N 1.34778 * 120.00084 * 176.32370 * 4 2 1 7 7 C 1.47019 * 125.64665 * 350.15661 * 6 4 2 8 8 C 1.54330 * 107.27115 * 181.08228 * 7 6 4 9 9 C 1.55447 * 102.96622 * 22.19316 * 8 7 6 10 10 H 1.08998 * 111.01559 * 82.52669 * 9 8 7 11 11 C 1.53001 * 111.11816 * 206.46464 * 9 8 7 12 12 C 1.50696 * 109.47076 * 287.10416 * 11 9 8 13 13 H 1.07998 * 119.99980 * 359.97438 * 12 11 9 14 14 C 1.37887 * 120.00085 * 179.97438 * 12 11 9 15 15 N 1.31514 * 119.99857 * 0.02562 * 14 12 11 16 16 Si 1.86791 * 120.00043 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47388 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47267 * 119.99842 * 16 14 12 19 19 H 1.48500 * 109.47284 * 240.00218 * 16 14 12 20 20 C 1.47423 * 125.64766 * 170.18191 * 6 4 2 21 21 H 1.08999 * 109.47234 * 269.99507 * 1 2 3 22 22 H 1.08996 * 109.47556 * 30.00017 * 1 2 3 23 23 H 1.09003 * 109.47085 * 149.99927 * 1 2 3 24 24 H 1.09001 * 109.46747 * 216.21778 * 3 2 1 25 25 H 1.08995 * 109.47404 * 336.21986 * 3 2 1 26 26 H 1.08999 * 109.46938 * 96.22270 * 3 2 1 27 27 H 1.08993 * 109.88304 * 300.49882 * 7 6 4 28 28 H 1.08999 * 109.88121 * 61.66622 * 7 6 4 29 29 H 1.08988 * 110.71996 * 140.55291 * 8 7 6 30 30 H 1.09000 * 110.71872 * 263.83033 * 8 7 6 31 31 H 1.09007 * 109.47058 * 47.10504 * 11 9 8 32 32 H 1.08998 * 109.47275 * 167.10062 * 11 9 8 33 33 H 0.96999 * 120.00041 * 179.97438 * 15 14 12 34 34 H 1.08997 * 110.37247 * 274.68912 * 20 6 4 35 35 H 1.09006 * 110.36678 * 36.90229 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5329 -2.2191 0.0666 6 7 3.4846 -1.1682 -0.0754 7 6 4.3276 0.0012 -0.3640 8 6 5.7933 -0.4819 -0.3744 9 6 5.6564 -2.0053 -0.6515 10 1 5.5413 -2.1999 -1.7178 11 6 6.8469 -2.7786 -0.0807 12 6 8.0661 -2.5210 -0.9281 13 1 7.9986 -1.8710 -1.7879 14 6 9.2679 -3.1150 -0.6055 15 7 9.3500 -3.9068 0.4413 16 14 10.7791 -2.7961 -1.6562 17 1 10.4243 -1.8777 -2.7679 18 1 11.8405 -2.1775 -0.8220 19 1 11.2737 -4.0802 -2.2145 20 6 4.3549 -2.3423 0.1181 21 1 -0.3633 -0.0001 1.0276 22 1 -0.3634 0.8899 -0.5138 23 1 -0.3633 -0.8900 -0.5139 24 1 3.0970 1.1690 -0.6072 25 1 1.5646 2.0536 -0.4144 26 1 2.4754 1.5278 1.0216 27 1 4.0668 0.4149 -1.3380 28 1 4.1917 0.7563 0.4103 29 1 6.3545 0.0058 -1.1713 30 1 6.2639 -0.3069 0.5931 31 1 7.0380 -2.4494 0.9407 32 1 6.6219 -3.8452 -0.0825 33 1 10.1954 -4.3250 0.6680 34 1 4.5672 -2.4868 1.1774 35 1 3.8873 -3.2340 -0.2994 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259964412.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:28 Heat of formation + Delta-G solvation = -0.215722 kcal Electronic energy + Delta-G solvation = -15963.506590 eV Core-core repulsion = 13383.813597 eV Total energy + Delta-G solvation = -2579.692994 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.33163 -37.46135 -35.52166 -33.47664 -31.57487 -29.61047 -28.19695 -26.79083 -25.71588 -22.85650 -22.03259 -19.68399 -19.46195 -17.03147 -16.55935 -16.13620 -15.83775 -14.80668 -14.41755 -14.17955 -13.63659 -13.48164 -13.25426 -12.59940 -12.55520 -12.27447 -12.13951 -12.05972 -11.59915 -11.21318 -10.91672 -10.77967 -10.43862 -10.25765 -9.87291 -9.72234 -9.33143 -9.07303 -8.79915 -8.37839 -8.10791 -6.02531 -4.04894 2.72814 3.29410 3.31939 3.37510 3.40465 3.92211 4.43586 4.90280 4.99928 5.12911 5.25968 5.28230 5.35112 5.37351 5.51766 5.56781 5.67087 5.73629 5.78914 6.09256 6.31339 6.34945 6.39902 6.58060 6.61869 6.84470 6.97517 7.14161 7.62582 7.74574 7.95877 8.10091 8.37702 8.72370 9.01395 9.59288 11.08780 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.061217 B = 0.005466 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.279696 B = 5121.646058 C = 5407.783830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.639 5.639 3 C 0.039 3.961 4 C 0.720 3.280 5 O -0.593 6.593 6 N -0.633 5.633 7 C 0.093 3.907 8 C -0.120 4.120 9 C -0.088 4.088 10 H 0.071 0.929 11 C 0.032 3.968 12 C -0.516 4.516 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.124 3.876 21 H 0.048 0.952 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.107 0.893 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.021 0.979 32 H 0.020 0.980 33 H 0.260 0.740 34 H 0.063 0.937 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.112 11.524 -1.111 16.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.378 5.378 3 C -0.104 4.104 4 C 0.424 3.576 5 O -0.471 6.471 6 N -0.371 5.371 7 C -0.029 4.029 8 C -0.158 4.158 9 C -0.107 4.107 10 H 0.090 0.910 11 C -0.005 4.005 12 C -0.555 4.555 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C 0.001 3.999 21 H 0.067 0.933 22 H 0.083 0.917 23 H 0.093 0.907 24 H 0.125 0.875 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.428 10.844 -0.965 16.522 hybrid contribution 0.858 0.331 -0.448 1.023 sum -11.570 11.174 -1.413 16.147 Atomic orbital electron populations 1.21461 0.78206 1.02574 1.01374 1.46828 1.06676 1.05034 1.79222 1.23014 0.99624 0.85295 1.02421 1.15471 0.80599 0.83618 0.77935 1.90891 1.67190 1.30336 1.58708 1.47664 1.03236 1.11993 1.74169 1.22621 0.92240 0.88838 0.99221 1.22739 0.92632 0.97318 1.03107 1.22568 0.94244 0.94472 0.99425 0.91031 1.19060 0.90186 0.95047 0.96237 1.21203 0.93962 1.28341 1.11956 0.92554 1.25015 0.98991 0.95190 0.95225 1.69970 1.25838 1.31102 1.26444 0.86557 0.83101 0.78023 0.80427 1.19770 1.21077 1.21068 1.22396 0.89740 0.87316 1.00413 0.93323 0.91692 0.90741 0.87513 0.91663 0.93109 0.91715 0.91219 0.90273 0.90509 0.96109 0.96135 0.93020 0.91823 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.16 10.45 59.85 0.63 1.79 16 2 N -0.64 -8.60 3.27 -195.34 -0.64 -9.24 16 3 C 0.04 0.38 9.05 59.85 0.54 0.92 16 4 C 0.72 12.68 8.31 -86.92 -0.72 11.95 16 5 O -0.59 -12.56 16.18 5.29 0.09 -12.47 16 6 N -0.63 -10.66 3.32 -190.36 -0.63 -11.29 16 7 C 0.09 1.26 4.87 -3.06 -0.01 1.25 16 8 C -0.12 -1.95 6.19 -24.74 -0.15 -2.11 16 9 C -0.09 -1.72 2.96 -88.31 -0.26 -1.98 16 10 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 11 C 0.03 0.79 4.49 -27.88 -0.13 0.66 16 12 C -0.52 -13.86 8.87 -34.44 -0.31 -14.16 16 13 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 15 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 16 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.12 2.30 6.42 -2.53 -0.02 2.29 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.06 0.50 7.85 -51.93 -0.41 0.09 16 23 H 0.07 0.91 7.47 -51.93 -0.39 0.52 16 24 H 0.11 1.03 3.05 -69.70 -0.21 0.82 16 25 H 0.06 0.48 7.82 -51.93 -0.41 0.07 16 26 H 0.05 0.48 7.77 -51.93 -0.40 0.07 16 27 H 0.07 0.77 6.80 -51.93 -0.35 0.42 16 28 H 0.07 0.80 5.89 -51.93 -0.31 0.49 16 29 H 0.08 1.24 8.14 -51.94 -0.42 0.81 16 30 H 0.08 1.29 7.92 -51.93 -0.41 0.88 16 31 H 0.02 0.53 7.98 -51.92 -0.41 0.12 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.06 1.20 8.04 -51.93 -0.42 0.79 16 35 H 0.07 1.42 7.95 -51.93 -0.41 1.00 16 LS Contribution 281.15 15.07 4.24 4.24 Total: -1.00 -32.27 281.15 -7.13 -39.40 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -5.37 Total: -3.26 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -0.53 Total: 2.10 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: -0.54 Total: -46.05 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.09 Total: -12.47 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.27 -7.13 -39.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259964412.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.183 kcal (2) G-P(sol) polarization free energy of solvation -32.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds