Wall clock time and date at job start Mon Mar 30 2020 03:04:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.46504 * 119.99288 * 2 1
4 4 C 1.34768 * 120.00415 * 180.02562 * 2 1 3
5 5 O 1.21592 * 120.00068 * 356.31969 * 4 2 1
6 6 N 1.34778 * 120.00084 * 176.32370 * 4 2 1
7 7 C 1.47019 * 125.64665 * 350.15661 * 6 4 2
8 8 C 1.54330 * 107.27115 * 181.08228 * 7 6 4
9 9 C 1.55447 * 102.96622 * 22.19316 * 8 7 6
10 10 H 1.08998 * 111.01559 * 82.52669 * 9 8 7
11 11 C 1.53001 * 111.11816 * 206.46464 * 9 8 7
12 12 C 1.50696 * 109.47076 * 287.10416 * 11 9 8
13 13 H 1.07998 * 119.99980 * 359.97438 * 12 11 9
14 14 C 1.37887 * 120.00085 * 179.97438 * 12 11 9
15 15 N 1.31514 * 119.99857 * 0.02562 * 14 12 11
16 16 Si 1.86791 * 120.00043 * 179.97438 * 14 12 11
17 17 H 1.48505 * 109.47388 * 359.97438 * 16 14 12
18 18 H 1.48500 * 109.47267 * 119.99842 * 16 14 12
19 19 H 1.48500 * 109.47284 * 240.00218 * 16 14 12
20 20 C 1.47423 * 125.64766 * 170.18191 * 6 4 2
21 21 H 1.08999 * 109.47234 * 269.99507 * 1 2 3
22 22 H 1.08996 * 109.47556 * 30.00017 * 1 2 3
23 23 H 1.09003 * 109.47085 * 149.99927 * 1 2 3
24 24 H 1.09001 * 109.46747 * 216.21778 * 3 2 1
25 25 H 1.08995 * 109.47404 * 336.21986 * 3 2 1
26 26 H 1.08999 * 109.46938 * 96.22270 * 3 2 1
27 27 H 1.08993 * 109.88304 * 300.49882 * 7 6 4
28 28 H 1.08999 * 109.88121 * 61.66622 * 7 6 4
29 29 H 1.08988 * 110.71996 * 140.55291 * 8 7 6
30 30 H 1.09000 * 110.71872 * 263.83033 * 8 7 6
31 31 H 1.09007 * 109.47058 * 47.10504 * 11 9 8
32 32 H 1.08998 * 109.47275 * 167.10062 * 11 9 8
33 33 H 0.96999 * 120.00041 * 179.97438 * 15 14 12
34 34 H 1.08997 * 110.37247 * 274.68912 * 20 6 4
35 35 H 1.09006 * 110.36678 * 36.90229 * 20 6 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1974 1.2689 0.0000
4 6 2.1389 -1.1671 -0.0005
5 8 1.5329 -2.2191 0.0666
6 7 3.4846 -1.1682 -0.0754
7 6 4.3276 0.0012 -0.3640
8 6 5.7933 -0.4819 -0.3744
9 6 5.6564 -2.0053 -0.6515
10 1 5.5413 -2.1999 -1.7178
11 6 6.8469 -2.7786 -0.0807
12 6 8.0661 -2.5210 -0.9281
13 1 7.9986 -1.8710 -1.7879
14 6 9.2679 -3.1150 -0.6055
15 7 9.3500 -3.9068 0.4413
16 14 10.7791 -2.7961 -1.6562
17 1 10.4243 -1.8777 -2.7679
18 1 11.8405 -2.1775 -0.8220
19 1 11.2737 -4.0802 -2.2145
20 6 4.3549 -2.3423 0.1181
21 1 -0.3633 -0.0001 1.0276
22 1 -0.3634 0.8899 -0.5138
23 1 -0.3633 -0.8900 -0.5139
24 1 3.0970 1.1690 -0.6072
25 1 1.5646 2.0536 -0.4144
26 1 2.4754 1.5278 1.0216
27 1 4.0668 0.4149 -1.3380
28 1 4.1917 0.7563 0.4103
29 1 6.3545 0.0058 -1.1713
30 1 6.2639 -0.3069 0.5931
31 1 7.0380 -2.4494 0.9407
32 1 6.6219 -3.8452 -0.0825
33 1 10.1954 -4.3250 0.6680
34 1 4.5672 -2.4868 1.1774
35 1 3.8873 -3.2340 -0.2994
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259964412.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:04:28
Heat of formation + Delta-G solvation = -21.443988 kcal
Electronic energy + Delta-G solvation = -15964.427117 eV
Core-core repulsion = 13383.813597 eV
Total energy + Delta-G solvation = -2580.613520 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 226.142 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-41.59920 -38.86589 -36.70276 -35.35762 -33.29165 -30.89105 -29.55061 -28.09495
-27.00653 -24.69134 -23.26605 -21.10168 -20.90183 -18.51012 -18.20587 -17.54415
-17.02401 -16.52221 -15.91956 -15.35618 -14.85734 -14.74696 -14.39977 -14.22214
-14.00053 -13.65965 -13.38900 -13.27903 -13.00466 -12.88552 -12.63339 -12.42007
-12.03803 -11.86950 -11.38513 -11.24473 -11.05102 -10.95870 -10.50315 -10.02774
-9.26194 -8.15153 -6.24908 1.43824 1.45084 1.55279 1.57715 2.01030
2.45060 2.83317 3.19295 3.76537 3.79523 4.08951 4.19667 4.30415
4.45069 4.45697 4.53151 4.60816 4.73809 4.81397 4.90499 4.95207
4.97003 5.08332 5.15607 5.26042 5.38846 5.54079 5.59402 5.74426
5.87348 5.92273 6.28209 6.87809 6.91634 7.42733 7.44154 8.97188
Molecular weight = 226.14amu
Principal moments of inertia in cm(-1)
A = 0.061217 B = 0.005466 C = 0.005176
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 457.279696 B = 5121.646058 C = 5407.783830
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.103 3.897
2 N -0.634 5.634
3 C 0.032 3.968
4 C 0.710 3.290
5 O -0.641 6.641
6 N -0.636 5.636
7 C 0.099 3.901
8 C -0.114 4.114
9 C -0.082 4.082
10 H 0.068 0.932
11 C 0.038 3.962
12 C -0.526 4.526
13 H 0.067 0.933
14 C -0.001 4.001
15 N -0.936 5.936
16 Si 0.963 3.037
17 H -0.258 1.258
18 H -0.280 1.280
19 H -0.285 1.285
20 C 0.131 3.869
21 H 0.053 0.947
22 H 0.104 0.896
23 H 0.053 0.947
24 H 0.110 0.890
25 H 0.098 0.902
26 H 0.059 0.941
27 H 0.093 0.907
28 H 0.101 0.899
29 H 0.091 0.909
30 H 0.069 0.931
31 H -0.001 1.001
32 H -0.014 1.014
33 H 0.261 0.739
34 H 0.054 0.946
35 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.358 14.535 -2.253 19.211
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.040 4.040
2 N -0.372 5.372
3 C -0.109 4.109
4 C 0.413 3.587
5 O -0.524 6.524
6 N -0.374 5.374
7 C -0.022 4.022
8 C -0.152 4.152
9 C -0.102 4.102
10 H 0.087 0.913
11 C 0.001 3.999
12 C -0.564 4.564
13 H 0.085 0.915
14 C -0.199 4.199
15 N -0.577 5.577
16 Si 0.788 3.212
17 H -0.182 1.182
18 H -0.206 1.206
19 H -0.211 1.211
20 C 0.008 3.992
21 H 0.072 0.928
22 H 0.123 0.877
23 H 0.072 0.928
24 H 0.127 0.873
25 H 0.117 0.883
26 H 0.077 0.923
27 H 0.111 0.889
28 H 0.119 0.881
29 H 0.110 0.890
30 H 0.087 0.913
31 H 0.018 0.982
32 H 0.005 0.995
33 H 0.070 0.930
34 H 0.072 0.928
35 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -12.690 13.928 -2.118 18.960
hybrid contribution 0.881 -0.604 -0.062 1.070
sum -11.809 13.324 -2.180 17.937
Atomic orbital electron populations
1.21658 0.76769 1.03496 1.02060 1.46988 1.07688 1.04893 1.77602
1.23224 1.00202 0.84131 1.03319 1.15771 0.80615 0.84340 0.77979
1.90850 1.68144 1.32529 1.60836 1.47606 1.03333 1.12154 1.74266
1.22862 0.89409 0.88026 1.01883 1.22696 0.95033 0.94388 1.03099
1.22302 0.92469 0.96683 0.98726 0.91329 1.18901 0.92057 0.93699
0.95265 1.21610 0.94642 1.28002 1.12181 0.91530 1.25947 1.02503
0.94959 0.96469 1.70113 1.26742 1.32434 1.28415 0.85430 0.78915
0.77962 0.78913 1.18159 1.20585 1.21125 1.22082 0.89755 0.87910
0.99492 0.92787 0.87718 0.92828 0.87255 0.88323 0.92273 0.88928
0.88090 0.89038 0.91269 0.98239 0.99541 0.92973 0.92780 0.92801
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.98 10.45 127.77 1.33 3.31 16
2 N -0.63 -15.39 3.27 -890.19 -2.91 -18.30 16
3 C 0.03 0.48 9.05 127.77 1.16 1.63 16
4 C 0.71 24.36 8.31 179.06 1.49 25.84 16
5 O -0.64 -27.69 16.18 -4.00 -0.06 -27.76 16
6 N -0.64 -20.74 3.32 -874.42 -2.91 -23.64 16
7 C 0.10 2.38 4.87 86.73 0.42 2.80 16
8 C -0.11 -3.51 6.19 31.89 0.20 -3.32 16
9 C -0.08 -3.25 2.96 -9.30 -0.03 -3.28 16
10 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16
11 C 0.04 1.95 4.49 29.85 0.13 2.08 16
12 C -0.53 -28.41 8.87 25.60 0.23 -28.18 16
13 H 0.07 3.39 7.74 -2.91 -0.02 3.36 16
14 C 0.00 -0.08 5.46 84.66 0.46 0.38 16
15 N -0.94 -56.25 13.29 21.45 0.28 -55.97 16
16 Si 0.96 43.05 29.54 68.60 2.03 45.08 16
17 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16
18 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16
19 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16
20 C 0.13 5.02 6.42 86.86 0.56 5.58 16
21 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16
22 H 0.10 1.18 7.85 -2.39 -0.02 1.16 16
23 H 0.05 1.27 7.47 -2.39 -0.02 1.25 16
24 H 0.11 1.58 3.05 -19.08 -0.06 1.52 16
25 H 0.10 0.88 7.82 -2.39 -0.02 0.86 16
26 H 0.06 0.83 7.77 -2.39 -0.02 0.82 16
27 H 0.09 1.79 6.80 -2.39 -0.02 1.77 16
28 H 0.10 1.87 5.89 -2.39 -0.01 1.86 16
29 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16
30 H 0.07 2.23 7.92 -2.39 -0.02 2.22 16
31 H 0.00 -0.04 7.98 -2.38 -0.02 -0.06 16
32 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16
33 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16
34 H 0.05 2.14 8.04 -2.39 -0.02 2.12 16
35 H 0.05 2.23 7.95 -2.38 -0.02 2.21 16
Total: -1.00 -72.16 281.15 3.39 -68.77
By element:
Atomic # 1 Polarization: 3.95 SS G_CDS: 1.01 Total: 4.96 kcal
Atomic # 6 Polarization: 0.90 SS G_CDS: 5.95 Total: 6.85 kcal
Atomic # 7 Polarization: -92.38 SS G_CDS: -5.54 Total: -97.91 kcal
Atomic # 8 Polarization: -27.69 SS G_CDS: -0.06 Total: -27.76 kcal
Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal
Total: -72.16 3.39 -68.77 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259964412.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.330 kcal
(2) G-P(sol) polarization free energy of solvation -72.161 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.831 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.774 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.444 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds