Wall clock time and date at job start Mon Mar 30 2020 03:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99288 * 2 1 4 4 C 1.34768 * 120.00415 * 180.02562 * 2 1 3 5 5 O 1.21592 * 120.00068 * 356.31969 * 4 2 1 6 6 N 1.34778 * 120.00084 * 176.32370 * 4 2 1 7 7 C 1.47019 * 125.64665 * 350.15661 * 6 4 2 8 8 C 1.54330 * 107.27115 * 181.08228 * 7 6 4 9 9 C 1.55447 * 102.96622 * 22.19316 * 8 7 6 10 10 H 1.08998 * 111.01559 * 82.52669 * 9 8 7 11 11 C 1.53001 * 111.11816 * 206.46464 * 9 8 7 12 12 C 1.50696 * 109.47076 * 287.10416 * 11 9 8 13 13 H 1.07998 * 119.99980 * 359.97438 * 12 11 9 14 14 C 1.37887 * 120.00085 * 179.97438 * 12 11 9 15 15 N 1.31514 * 119.99857 * 0.02562 * 14 12 11 16 16 Si 1.86791 * 120.00043 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47388 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47267 * 119.99842 * 16 14 12 19 19 H 1.48500 * 109.47284 * 240.00218 * 16 14 12 20 20 C 1.47423 * 125.64766 * 170.18191 * 6 4 2 21 21 H 1.08999 * 109.47234 * 269.99507 * 1 2 3 22 22 H 1.08996 * 109.47556 * 30.00017 * 1 2 3 23 23 H 1.09003 * 109.47085 * 149.99927 * 1 2 3 24 24 H 1.09001 * 109.46747 * 216.21778 * 3 2 1 25 25 H 1.08995 * 109.47404 * 336.21986 * 3 2 1 26 26 H 1.08999 * 109.46938 * 96.22270 * 3 2 1 27 27 H 1.08993 * 109.88304 * 300.49882 * 7 6 4 28 28 H 1.08999 * 109.88121 * 61.66622 * 7 6 4 29 29 H 1.08988 * 110.71996 * 140.55291 * 8 7 6 30 30 H 1.09000 * 110.71872 * 263.83033 * 8 7 6 31 31 H 1.09007 * 109.47058 * 47.10504 * 11 9 8 32 32 H 1.08998 * 109.47275 * 167.10062 * 11 9 8 33 33 H 0.96999 * 120.00041 * 179.97438 * 15 14 12 34 34 H 1.08997 * 110.37247 * 274.68912 * 20 6 4 35 35 H 1.09006 * 110.36678 * 36.90229 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5329 -2.2191 0.0666 6 7 3.4846 -1.1682 -0.0754 7 6 4.3276 0.0012 -0.3640 8 6 5.7933 -0.4819 -0.3744 9 6 5.6564 -2.0053 -0.6515 10 1 5.5413 -2.1999 -1.7178 11 6 6.8469 -2.7786 -0.0807 12 6 8.0661 -2.5210 -0.9281 13 1 7.9986 -1.8710 -1.7879 14 6 9.2679 -3.1150 -0.6055 15 7 9.3500 -3.9068 0.4413 16 14 10.7791 -2.7961 -1.6562 17 1 10.4243 -1.8777 -2.7679 18 1 11.8405 -2.1775 -0.8220 19 1 11.2737 -4.0802 -2.2145 20 6 4.3549 -2.3423 0.1181 21 1 -0.3633 -0.0001 1.0276 22 1 -0.3634 0.8899 -0.5138 23 1 -0.3633 -0.8900 -0.5139 24 1 3.0970 1.1690 -0.6072 25 1 1.5646 2.0536 -0.4144 26 1 2.4754 1.5278 1.0216 27 1 4.0668 0.4149 -1.3380 28 1 4.1917 0.7563 0.4103 29 1 6.3545 0.0058 -1.1713 30 1 6.2639 -0.3069 0.5931 31 1 7.0380 -2.4494 0.9407 32 1 6.6219 -3.8452 -0.0825 33 1 10.1954 -4.3250 0.6680 34 1 4.5672 -2.4868 1.1774 35 1 3.8873 -3.2340 -0.2994 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259964412.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:28 Heat of formation + Delta-G solvation = -21.443988 kcal Electronic energy + Delta-G solvation = -15964.427117 eV Core-core repulsion = 13383.813597 eV Total energy + Delta-G solvation = -2580.613520 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.59920 -38.86589 -36.70276 -35.35762 -33.29165 -30.89105 -29.55061 -28.09495 -27.00653 -24.69134 -23.26605 -21.10168 -20.90183 -18.51012 -18.20587 -17.54415 -17.02401 -16.52221 -15.91956 -15.35618 -14.85734 -14.74696 -14.39977 -14.22214 -14.00053 -13.65965 -13.38900 -13.27903 -13.00466 -12.88552 -12.63339 -12.42007 -12.03803 -11.86950 -11.38513 -11.24473 -11.05102 -10.95870 -10.50315 -10.02774 -9.26194 -8.15153 -6.24908 1.43824 1.45084 1.55279 1.57715 2.01030 2.45060 2.83317 3.19295 3.76537 3.79523 4.08951 4.19667 4.30415 4.45069 4.45697 4.53151 4.60816 4.73809 4.81397 4.90499 4.95207 4.97003 5.08332 5.15607 5.26042 5.38846 5.54079 5.59402 5.74426 5.87348 5.92273 6.28209 6.87809 6.91634 7.42733 7.44154 8.97188 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.061217 B = 0.005466 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.279696 B = 5121.646058 C = 5407.783830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.634 5.634 3 C 0.032 3.968 4 C 0.710 3.290 5 O -0.641 6.641 6 N -0.636 5.636 7 C 0.099 3.901 8 C -0.114 4.114 9 C -0.082 4.082 10 H 0.068 0.932 11 C 0.038 3.962 12 C -0.526 4.526 13 H 0.067 0.933 14 C -0.001 4.001 15 N -0.936 5.936 16 Si 0.963 3.037 17 H -0.258 1.258 18 H -0.280 1.280 19 H -0.285 1.285 20 C 0.131 3.869 21 H 0.053 0.947 22 H 0.104 0.896 23 H 0.053 0.947 24 H 0.110 0.890 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.069 0.931 31 H -0.001 1.001 32 H -0.014 1.014 33 H 0.261 0.739 34 H 0.054 0.946 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.358 14.535 -2.253 19.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.372 5.372 3 C -0.109 4.109 4 C 0.413 3.587 5 O -0.524 6.524 6 N -0.374 5.374 7 C -0.022 4.022 8 C -0.152 4.152 9 C -0.102 4.102 10 H 0.087 0.913 11 C 0.001 3.999 12 C -0.564 4.564 13 H 0.085 0.915 14 C -0.199 4.199 15 N -0.577 5.577 16 Si 0.788 3.212 17 H -0.182 1.182 18 H -0.206 1.206 19 H -0.211 1.211 20 C 0.008 3.992 21 H 0.072 0.928 22 H 0.123 0.877 23 H 0.072 0.928 24 H 0.127 0.873 25 H 0.117 0.883 26 H 0.077 0.923 27 H 0.111 0.889 28 H 0.119 0.881 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.018 0.982 32 H 0.005 0.995 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.690 13.928 -2.118 18.960 hybrid contribution 0.881 -0.604 -0.062 1.070 sum -11.809 13.324 -2.180 17.937 Atomic orbital electron populations 1.21658 0.76769 1.03496 1.02060 1.46988 1.07688 1.04893 1.77602 1.23224 1.00202 0.84131 1.03319 1.15771 0.80615 0.84340 0.77979 1.90850 1.68144 1.32529 1.60836 1.47606 1.03333 1.12154 1.74266 1.22862 0.89409 0.88026 1.01883 1.22696 0.95033 0.94388 1.03099 1.22302 0.92469 0.96683 0.98726 0.91329 1.18901 0.92057 0.93699 0.95265 1.21610 0.94642 1.28002 1.12181 0.91530 1.25947 1.02503 0.94959 0.96469 1.70113 1.26742 1.32434 1.28415 0.85430 0.78915 0.77962 0.78913 1.18159 1.20585 1.21125 1.22082 0.89755 0.87910 0.99492 0.92787 0.87718 0.92828 0.87255 0.88323 0.92273 0.88928 0.88090 0.89038 0.91269 0.98239 0.99541 0.92973 0.92780 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.98 10.45 127.77 1.33 3.31 16 2 N -0.63 -15.39 3.27 -890.19 -2.91 -18.30 16 3 C 0.03 0.48 9.05 127.77 1.16 1.63 16 4 C 0.71 24.36 8.31 179.06 1.49 25.84 16 5 O -0.64 -27.69 16.18 -4.00 -0.06 -27.76 16 6 N -0.64 -20.74 3.32 -874.42 -2.91 -23.64 16 7 C 0.10 2.38 4.87 86.73 0.42 2.80 16 8 C -0.11 -3.51 6.19 31.89 0.20 -3.32 16 9 C -0.08 -3.25 2.96 -9.30 -0.03 -3.28 16 10 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 11 C 0.04 1.95 4.49 29.85 0.13 2.08 16 12 C -0.53 -28.41 8.87 25.60 0.23 -28.18 16 13 H 0.07 3.39 7.74 -2.91 -0.02 3.36 16 14 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 15 N -0.94 -56.25 13.29 21.45 0.28 -55.97 16 16 Si 0.96 43.05 29.54 68.60 2.03 45.08 16 17 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 20 C 0.13 5.02 6.42 86.86 0.56 5.58 16 21 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.10 1.18 7.85 -2.39 -0.02 1.16 16 23 H 0.05 1.27 7.47 -2.39 -0.02 1.25 16 24 H 0.11 1.58 3.05 -19.08 -0.06 1.52 16 25 H 0.10 0.88 7.82 -2.39 -0.02 0.86 16 26 H 0.06 0.83 7.77 -2.39 -0.02 0.82 16 27 H 0.09 1.79 6.80 -2.39 -0.02 1.77 16 28 H 0.10 1.87 5.89 -2.39 -0.01 1.86 16 29 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.07 2.23 7.92 -2.39 -0.02 2.22 16 31 H 0.00 -0.04 7.98 -2.38 -0.02 -0.06 16 32 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 33 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 34 H 0.05 2.14 8.04 -2.39 -0.02 2.12 16 35 H 0.05 2.23 7.95 -2.38 -0.02 2.21 16 Total: -1.00 -72.16 281.15 3.39 -68.77 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 1.01 Total: 4.96 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 5.95 Total: 6.85 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -5.54 Total: -97.91 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.06 Total: -27.76 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -72.16 3.39 -68.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259964412.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.330 kcal (2) G-P(sol) polarization free energy of solvation -72.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds