Wall clock time and date at job start Mon Mar 30 2020 03:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 120.00233 * 2 1 4 4 C 1.34775 * 120.00074 * 180.02562 * 2 1 3 5 5 O 1.21597 * 119.99852 * 359.30923 * 4 2 1 6 6 N 1.34773 * 120.00334 * 179.31743 * 4 2 1 7 7 C 1.47421 * 125.64777 * 358.47332 * 6 4 2 8 8 C 1.54909 * 104.83438 * 204.15275 * 7 6 4 9 9 C 1.55148 * 101.58175 * 322.99322 * 8 7 6 10 10 C 1.47016 * 125.64854 * 178.50448 * 6 4 2 11 11 H 1.08997 * 109.88906 * 59.49736 * 10 6 4 12 12 C 1.52999 * 109.88369 * 298.33055 * 10 6 4 13 13 C 1.50702 * 109.47112 * 73.42968 * 12 10 6 14 14 H 1.07998 * 119.99493 * 5.77622 * 13 12 10 15 15 C 1.37878 * 120.00226 * 185.77419 * 13 12 10 16 16 N 1.31516 * 119.99956 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00056 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46976 * 60.00162 * 17 15 13 19 19 H 1.48501 * 109.46944 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47080 * 300.00125 * 17 15 13 21 21 H 1.09001 * 109.47316 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46766 * 299.99707 * 1 2 3 23 23 H 1.09003 * 109.47281 * 59.99712 * 1 2 3 24 24 H 1.09000 * 109.47382 * 263.33980 * 3 2 1 25 25 H 1.08999 * 109.46744 * 23.34086 * 3 2 1 26 26 H 1.08994 * 109.47042 * 143.33772 * 3 2 1 27 27 H 1.08999 * 110.37136 * 85.31282 * 7 6 4 28 28 H 1.09003 * 110.36885 * 322.98988 * 7 6 4 29 29 H 1.08995 * 111.00338 * 204.91613 * 8 7 6 30 30 H 1.09000 * 111.00283 * 81.06823 * 8 7 6 31 31 H 1.09003 * 110.72122 * 277.13771 * 9 8 7 32 32 H 1.09004 * 110.72644 * 153.86449 * 9 8 7 33 33 H 1.09005 * 109.47507 * 193.42989 * 12 10 6 34 34 H 1.08999 * 109.47325 * 313.43232 * 12 10 6 35 35 H 0.96994 * 119.99890 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5309 -2.2202 0.0117 6 7 3.4865 -1.1673 -0.0144 7 6 4.3454 0.0300 -0.0618 8 6 5.6806 -0.4636 -0.6728 9 6 5.8075 -1.8762 -0.0439 10 6 4.3436 -2.3614 0.0145 11 1 4.1280 -2.9935 -0.8469 12 6 4.1053 -3.1417 1.3088 13 6 2.7726 -3.8413 1.2355 14 1 2.1995 -3.8167 0.3204 15 6 2.2849 -4.5128 2.3365 16 7 2.9830 -4.5431 3.4507 17 14 0.6332 -5.3805 2.2454 18 1 0.6768 -6.4174 1.1831 19 1 0.3387 -6.0227 3.5515 20 1 -0.4286 -4.3918 1.9287 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8900 24 1 2.4825 1.5238 -1.0207 25 1 1.5620 2.0551 0.4072 26 1 3.0931 1.1711 0.6136 27 1 4.5090 0.4196 0.9430 28 1 3.8969 0.7937 -0.6972 29 1 6.5093 0.1755 -0.3684 30 1 5.6144 -0.5240 -1.7591 31 1 6.2339 -1.8157 0.9574 32 1 6.4052 -2.5293 -0.6799 33 1 4.8966 -3.8801 1.4389 34 1 4.1083 -2.4534 2.1539 35 1 2.6397 -5.0152 4.2254 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260026176.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:17 Heat of formation + Delta-G solvation = 23.091443 kcal Electronic energy + Delta-G solvation = -16869.570393 eV Core-core repulsion = 14290.888074 eV Total energy + Delta-G solvation = -2578.682319 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.93556 -37.04533 -35.09865 -32.67236 -31.05190 -30.20032 -27.86945 -26.24155 -25.27679 -22.74350 -21.23661 -20.70623 -18.51789 -16.69521 -16.22507 -15.75404 -15.37213 -14.67836 -14.23267 -13.88000 -13.30763 -13.05739 -12.88393 -12.33162 -12.28314 -11.95689 -11.73807 -11.66946 -11.28485 -11.25069 -10.86387 -10.43065 -10.32256 -10.25220 -9.95890 -9.69223 -8.93245 -8.30987 -8.07526 -7.91771 -7.50502 -5.66549 -3.56770 3.21906 3.57870 3.58673 3.68942 4.09147 4.35624 4.79685 4.89929 5.14682 5.22526 5.33484 5.47677 5.60070 5.70143 5.72465 5.78424 5.83444 5.87822 5.96989 6.12133 6.20774 6.24712 6.38339 6.66912 6.87044 7.02206 7.06868 7.51614 7.85796 7.98802 8.39132 8.72678 8.74555 9.36332 9.75180 10.03540 11.46680 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.024101 B = 0.011931 C = 0.008659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.495432 B = 2346.325389 C = 3232.678428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.647 5.647 3 C 0.064 3.936 4 C 0.711 3.289 5 O -0.530 6.530 6 N -0.622 5.622 7 C 0.084 3.916 8 C -0.137 4.137 9 C -0.130 4.130 10 C 0.158 3.842 11 H 0.061 0.939 12 C 0.013 3.987 13 C -0.485 4.485 14 H 0.097 0.903 15 C 0.044 3.956 16 N -0.917 5.917 17 Si 0.893 3.107 18 H -0.282 1.282 19 H -0.297 1.297 20 H -0.278 1.278 21 H 0.087 0.913 22 H 0.048 0.952 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.018 0.982 34 H 0.019 0.981 35 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.567 13.383 -8.106 15.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.388 5.388 3 C -0.079 4.079 4 C 0.415 3.585 5 O -0.402 6.402 6 N -0.361 5.361 7 C -0.039 4.039 8 C -0.175 4.175 9 C -0.168 4.168 10 C 0.055 3.945 11 H 0.079 0.921 12 C -0.024 4.024 13 C -0.523 4.523 14 H 0.114 0.886 15 C -0.153 4.153 16 N -0.560 5.560 17 Si 0.723 3.277 18 H -0.208 1.208 19 H -0.223 1.223 20 H -0.204 1.204 21 H 0.106 0.894 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.105 0.895 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.036 0.964 34 H 0.037 0.963 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.097 12.674 -7.933 15.099 hybrid contribution -0.880 -0.227 0.292 0.955 sum 1.217 12.447 -7.642 14.656 Atomic orbital electron populations 1.21399 0.78782 1.04089 0.99562 1.46948 1.06365 1.04781 1.80708 1.22524 0.98451 0.86363 1.00553 1.15531 0.81022 0.83476 0.78520 1.91018 1.66627 1.27709 1.54894 1.47439 1.03062 1.07344 1.78216 1.22970 0.91141 0.90044 0.99740 1.22815 0.96918 0.97545 1.00210 1.22765 0.97141 0.95664 1.01255 1.21737 0.85915 0.85369 1.01461 0.92077 1.19532 0.97786 0.94622 0.90500 1.22049 1.02567 1.28074 0.99651 0.88585 1.24960 0.97134 0.97428 0.95747 1.69997 1.38333 1.45234 1.02457 0.86629 0.85617 0.79514 0.75967 1.20825 1.22322 1.20417 0.89387 0.93353 0.93576 0.93516 0.92253 0.89542 0.92252 0.89796 0.90787 0.91252 0.90762 0.90910 0.96374 0.96295 0.93852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.62 10.65 59.85 0.64 2.25 16 2 N -0.65 -11.28 3.27 -195.34 -0.64 -11.92 16 3 C 0.06 0.80 8.78 59.85 0.53 1.32 16 4 C 0.71 15.71 8.07 -86.92 -0.70 15.00 16 5 O -0.53 -14.17 11.24 5.28 0.06 -14.11 16 6 N -0.62 -12.41 3.06 -168.70 -0.52 -12.92 16 7 C 0.08 1.20 4.91 -2.53 -0.01 1.19 16 8 C -0.14 -1.72 7.08 -24.59 -0.17 -1.90 16 9 C -0.13 -2.08 6.46 -24.90 -0.16 -2.24 16 10 C 0.16 3.37 3.03 -66.95 -0.20 3.17 16 11 H 0.06 1.38 8.09 -51.93 -0.42 0.96 16 12 C 0.01 0.36 4.44 -27.88 -0.12 0.23 16 13 C -0.49 -14.77 7.01 -34.44 -0.24 -15.02 16 14 H 0.10 3.02 5.01 -53.07 -0.27 2.76 16 15 C 0.04 1.39 5.46 -17.82 -0.10 1.29 16 16 N -0.92 -29.62 13.29 55.43 0.74 -28.89 16 17 Si 0.89 24.61 29.54 -169.99 -5.02 19.59 16 18 H -0.28 -7.62 7.11 56.52 0.40 -7.22 16 19 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 20 H -0.28 -7.73 7.11 56.52 0.40 -7.33 16 21 H 0.09 1.60 6.90 -51.93 -0.36 1.24 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.50 7.05 -51.93 -0.37 0.14 16 25 H 0.06 0.61 8.02 -51.93 -0.42 0.19 16 26 H 0.09 1.08 4.22 -51.93 -0.22 0.86 16 27 H 0.06 0.83 7.25 -51.93 -0.38 0.46 16 28 H 0.08 0.99 4.56 -51.93 -0.24 0.76 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.22 7.85 -51.93 -0.41 0.81 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.02 0.51 8.11 -51.93 -0.42 0.09 16 34 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.25 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 271.84 15.07 4.10 4.10 Total: -1.00 -36.44 271.84 -7.00 -43.44 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -5.16 Total: -4.59 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -0.55 Total: 5.31 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: -0.42 Total: -53.74 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.06 Total: -14.11 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.02 Total: 19.59 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -36.44 -7.00 -43.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260026176.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.530 kcal (2) G-P(sol) polarization free energy of solvation -36.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds