Wall clock time and date at job start Mon Mar 30 2020 02:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21274 * 120.00413 * 2 1 4 4 N 1.34784 * 119.99635 * 179.72958 * 2 1 3 5 5 C 1.47060 * 136.05955 * 359.97438 * 4 2 1 6 6 C 1.53493 * 87.98914 * 207.08502 * 5 4 2 7 7 C 1.47066 * 136.05424 * 179.62572 * 4 2 1 8 8 H 1.08995 * 113.47095 * 267.69602 * 7 4 2 9 9 C 1.53004 * 113.46876 * 38.14121 * 7 4 2 10 10 N 1.46903 * 109.46621 * 285.49280 * 9 7 4 11 11 C 1.46908 * 110.99965 * 293.95227 * 10 9 7 12 12 C 1.46904 * 110.99892 * 170.00315 * 10 9 7 13 13 C 1.50699 * 109.46905 * 189.99927 * 12 10 9 14 14 H 1.08002 * 120.00204 * 359.97438 * 13 12 10 15 15 C 1.37879 * 120.00056 * 180.02562 * 13 12 10 16 16 N 1.31519 * 119.99617 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00245 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47253 * 59.99540 * 17 15 13 19 19 H 1.48494 * 109.47111 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47087 * 299.99458 * 17 15 13 21 21 H 1.08998 * 109.47713 * 180.26932 * 1 2 3 22 22 H 1.09000 * 109.46863 * 300.27575 * 1 2 3 23 23 H 1.08998 * 109.46954 * 60.26886 * 1 2 3 24 24 H 1.08999 * 113.46648 * 321.86761 * 5 4 2 25 25 H 1.08999 * 113.46926 * 92.30593 * 5 4 2 26 26 H 1.09004 * 114.20641 * 87.51650 * 6 5 4 27 27 H 1.08998 * 114.21211 * 220.34484 * 6 5 4 28 28 H 1.08999 * 109.47174 * 45.48836 * 9 7 4 29 29 H 1.08994 * 109.47130 * 165.49349 * 9 7 4 30 30 H 1.08998 * 109.46782 * 59.99801 * 11 10 9 31 31 H 1.08994 * 109.47086 * 180.02562 * 11 10 9 32 32 H 1.09004 * 109.46835 * 300.00359 * 11 10 9 33 33 H 1.09004 * 109.46614 * 309.99413 * 12 10 9 34 34 H 1.08995 * 109.47544 * 69.99689 * 12 10 9 35 35 H 0.97000 * 120.00087 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 0.0055 5 6 1.8264 -2.5945 0.0127 6 6 3.1652 -2.8679 0.7120 7 6 3.5941 -1.5741 0.0008 8 1 3.9945 -1.7408 -0.9992 9 6 4.4898 -0.6751 0.8553 10 7 4.7049 0.6023 0.1625 11 6 5.4792 0.4084 -1.0709 12 6 5.3582 1.5771 1.0463 13 6 5.3413 2.9360 0.3950 14 1 4.8907 3.0627 -0.5784 15 6 5.9019 4.0172 1.0411 16 7 6.4510 3.8628 2.2262 17 14 5.8816 5.7015 0.2335 18 1 4.4767 6.1173 -0.0089 19 1 6.5418 6.6868 1.1270 20 1 6.6095 5.6393 -1.0593 21 1 -0.3634 -1.0276 0.0048 22 1 -0.3633 0.5181 0.8875 23 1 -0.3633 0.5096 -0.8924 24 1 0.9588 -2.8232 0.6316 25 1 1.7605 -3.0305 -0.9841 26 1 3.1255 -2.7921 1.7987 27 1 3.6797 -3.7615 0.3587 28 1 4.0090 -0.4908 1.8160 29 1 5.4491 -1.1666 1.0174 30 1 4.9387 -0.2640 -1.7371 31 1 5.6244 1.3697 -1.5636 32 1 6.4493 -0.0245 -0.8265 33 1 4.8237 1.6223 1.9952 34 1 6.3894 1.2723 1.2243 35 1 6.8451 4.6235 2.6810 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260117637.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:05 Heat of formation + Delta-G solvation = -8.892707 kcal Electronic energy + Delta-G solvation = -16286.732694 eV Core-core repulsion = 13706.663438 eV Total energy + Delta-G solvation = -2580.069256 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.25482 -38.66680 -37.73018 -34.67710 -31.95734 -30.11271 -29.06901 -28.69218 -26.62283 -24.03197 -22.85323 -21.91169 -19.52890 -18.55571 -17.62000 -16.88517 -16.71607 -16.46138 -15.81717 -15.63533 -15.32454 -14.62216 -14.06602 -13.87625 -13.69782 -13.26610 -13.20039 -13.08015 -12.87108 -12.77098 -12.63432 -12.50559 -12.35341 -12.19384 -11.86391 -11.63355 -11.06906 -10.63719 -10.38177 -9.44539 -8.76803 -8.21375 -6.30545 1.33646 1.39642 1.47470 1.98423 2.16085 2.38478 3.09008 3.32605 3.64146 3.83265 4.01537 4.23550 4.34768 4.44248 4.48178 4.49823 4.67436 4.68806 4.71905 4.74260 4.84414 4.99797 5.01892 5.04821 5.11612 5.27297 5.28253 5.45847 5.63623 6.07352 6.41160 6.73006 6.84743 7.11477 7.37635 7.59950 8.89614 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.034698 B = 0.007534 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.777913 B = 3715.618957 C = 4148.325684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.501 3.499 3 O -0.555 6.555 4 N -0.651 5.651 5 C 0.107 3.893 6 C -0.133 4.133 7 C 0.126 3.874 8 H 0.095 0.905 9 C 0.054 3.946 10 N -0.527 5.527 11 C 0.047 3.953 12 C 0.220 3.780 13 C -0.513 4.513 14 H 0.051 0.949 15 C -0.004 4.004 16 N -0.938 5.938 17 Si 0.972 3.028 18 H -0.275 1.275 19 H -0.275 1.275 20 H -0.264 1.264 21 H 0.102 0.898 22 H 0.088 0.912 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.106 0.894 26 H 0.090 0.910 27 H 0.120 0.880 28 H 0.043 0.957 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.012 0.988 33 H -0.015 1.015 34 H -0.042 1.042 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.727 -17.307 -5.403 21.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.291 3.709 3 O -0.431 6.431 4 N -0.389 5.389 5 C -0.014 4.014 6 C -0.171 4.171 7 C 0.022 3.978 8 H 0.112 0.888 9 C -0.075 4.075 10 N -0.250 5.250 11 C -0.102 4.102 12 C 0.094 3.906 13 C -0.551 4.551 14 H 0.070 0.930 15 C -0.201 4.201 16 N -0.579 5.579 17 Si 0.796 3.204 18 H -0.201 1.201 19 H -0.200 1.200 20 H -0.189 1.189 21 H 0.121 0.879 22 H 0.106 0.894 23 H 0.113 0.887 24 H 0.117 0.883 25 H 0.123 0.877 26 H 0.108 0.892 27 H 0.138 0.862 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.031 0.969 33 H 0.003 0.997 34 H -0.024 1.024 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.921 -16.230 -5.396 20.293 hybrid contribution 1.138 0.991 0.267 1.532 sum -9.783 -15.239 -5.129 18.822 Atomic orbital electron populations 1.21744 0.88754 1.05542 1.04914 1.21320 0.91420 0.82074 0.76089 1.90998 1.71113 1.31817 1.49201 1.50067 1.08757 1.06362 1.73759 1.23129 0.98829 0.77524 1.01966 1.23503 0.96782 0.96131 1.00699 1.22940 0.83188 0.92626 0.99068 0.88759 1.22297 0.97918 0.90352 0.96938 1.61980 1.48697 1.08212 1.06125 1.22156 0.94458 1.00573 0.92991 1.19195 0.89133 0.91166 0.91115 1.21362 1.35805 0.93988 1.03995 0.93032 1.25957 0.94952 1.03532 0.95618 1.70088 1.40024 1.32448 1.15341 0.85410 0.78355 0.78150 0.78512 1.20065 1.20014 1.18914 0.87877 0.89371 0.88746 0.88266 0.87652 0.89183 0.86220 0.93875 0.94650 0.90878 0.93613 0.96945 0.99653 1.02449 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 10.36 71.23 0.74 -2.61 16 2 C 0.50 17.49 8.09 87.65 0.71 18.20 16 3 O -0.56 -27.73 15.62 -3.01 -0.05 -27.77 16 4 N -0.65 -18.19 3.56 -833.30 -2.97 -21.16 16 5 C 0.11 1.54 7.98 83.17 0.66 2.20 16 6 C -0.13 -2.15 8.04 31.01 0.25 -1.90 16 7 C 0.13 3.51 3.85 41.87 0.16 3.67 16 8 H 0.09 2.46 6.62 -2.39 -0.02 2.44 16 9 C 0.05 2.13 4.64 86.30 0.40 2.53 16 10 N -0.53 -26.34 2.79 -927.02 -2.59 -28.93 16 11 C 0.05 2.04 9.17 127.69 1.17 3.21 16 12 C 0.22 13.45 4.72 85.56 0.40 13.85 16 13 C -0.51 -33.09 8.46 25.60 0.22 -32.88 16 14 H 0.05 3.36 7.12 -2.91 -0.02 3.34 16 15 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 16 N -0.94 -61.22 13.29 21.45 0.28 -60.94 16 17 Si 0.97 48.85 29.54 68.60 2.03 50.88 16 18 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 19 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 20 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 21 H 0.10 1.46 7.31 -2.39 -0.02 1.45 16 22 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.10 0.98 7.96 -2.39 -0.02 0.96 16 25 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.09 1.57 8.13 -2.39 -0.02 1.55 16 27 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.04 1.88 7.93 -2.39 -0.02 1.86 16 29 H 0.04 1.32 8.12 -2.39 -0.02 1.30 16 30 H 0.07 2.66 6.46 -2.39 -0.02 2.64 16 31 H 0.04 2.21 6.76 -2.39 -0.02 2.20 16 32 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 33 H -0.01 -0.99 7.93 -2.38 -0.02 -1.01 16 34 H -0.04 -2.69 8.12 -2.39 -0.02 -2.71 16 35 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -85.77 288.39 2.93 -82.83 By element: Atomic # 1 Polarization: -2.47 SS G_CDS: 1.05 Total: -1.42 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 5.18 Total: 6.50 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -5.27 Total: -111.02 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.05 Total: -27.77 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 2.03 Total: 50.88 kcal Total: -85.77 2.93 -82.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260117637.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.941 kcal (2) G-P(sol) polarization free energy of solvation -85.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds