Wall clock time and date at job start Mon Mar 30 2020 02:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21281 * 120.00343 * 2 1 4 4 N 1.34781 * 119.99540 * 180.02562 * 2 1 3 5 5 C 1.47021 * 125.64963 * 359.97438 * 4 2 1 6 6 C 1.54320 * 107.26834 * 181.10366 * 5 4 2 7 7 C 1.55154 * 102.94515 * 22.19503 * 6 5 4 8 8 H 1.09002 * 111.00378 * 82.56929 * 7 6 5 9 9 C 1.52997 * 111.00416 * 206.38423 * 7 6 5 10 10 N 1.46908 * 109.47324 * 181.81963 * 9 7 6 11 11 C 1.46891 * 111.00352 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47273 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99770 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00011 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99678 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99998 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47050 * 89.99771 * 16 14 12 18 18 H 1.48502 * 109.46964 * 209.99649 * 16 14 12 19 19 H 1.48501 * 109.47048 * 329.99806 * 16 14 12 20 20 C 1.47425 * 125.64375 * 180.02562 * 4 2 1 21 21 H 1.08991 * 109.47549 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46957 * 300.00205 * 1 2 3 23 23 H 1.09006 * 109.46772 * 59.99512 * 1 2 3 24 24 H 1.09001 * 109.87815 * 61.68932 * 5 4 2 25 25 H 1.08997 * 110.01366 * 300.59633 * 5 4 2 26 26 H 1.09008 * 110.72283 * 263.82731 * 6 5 4 27 27 H 1.09004 * 110.87038 * 140.62886 * 6 5 4 28 28 H 1.09007 * 109.47276 * 301.81622 * 9 7 6 29 29 H 1.09004 * 109.47247 * 61.81869 * 9 7 6 30 30 H 1.00903 * 110.99800 * 56.04090 * 10 9 7 31 31 H 1.09005 * 109.47379 * 300.00090 * 11 10 9 32 32 H 1.09003 * 109.47203 * 59.99888 * 11 10 9 33 33 H 0.97003 * 119.99853 * 179.97438 * 15 14 12 34 34 H 1.08999 * 110.36494 * 36.99263 * 20 4 2 35 35 H 1.08994 * 110.36944 * 274.66110 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.5745 -2.5067 -0.0006 6 6 2.7279 -3.5316 0.0271 7 6 3.9077 -2.7114 0.6124 8 1 3.8577 -2.6769 1.7007 9 6 5.2517 -3.2743 0.1456 10 7 6.3437 -2.5015 0.7527 11 6 7.6522 -3.0144 0.3257 12 6 8.7451 -2.1984 0.9667 13 1 8.4927 -1.3809 1.6258 14 6 10.0672 -2.4963 0.7126 15 7 11.0208 -1.7845 1.2724 16 14 10.5036 -3.9107 -0.4268 17 1 10.6066 -3.4096 -1.8208 18 1 11.8045 -4.4957 -0.0137 19 1 9.4467 -4.9511 -0.3515 20 6 3.6479 -1.3124 -0.0001 21 1 -0.3634 -1.0275 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.9784 -2.6436 -0.9028 25 1 0.9461 -2.6317 0.8812 26 1 2.9607 -3.8776 -0.9800 27 1 2.4840 -4.3731 0.6756 28 1 5.3333 -4.3182 0.4484 29 1 5.3173 -3.2047 -0.9402 30 1 6.2675 -2.4970 1.7589 31 1 7.7508 -4.0566 0.6294 32 1 7.7343 -2.9426 -0.7589 33 1 11.9509 -1.9942 1.0939 34 1 4.1055 -0.5379 0.6155 35 1 4.0340 -1.2664 -1.0183 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260148869.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:13 Heat of formation + Delta-G solvation = -39.969246 kcal Electronic energy + Delta-G solvation = -15443.534926 eV Core-core repulsion = 12862.118090 eV Total energy + Delta-G solvation = -2581.416836 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.02981 -37.74178 -35.37408 -32.81359 -31.75232 -29.93792 -29.25446 -27.00668 -24.38460 -22.77224 -21.09846 -20.30331 -19.29487 -17.07038 -16.86967 -16.28861 -15.52547 -14.91214 -14.65264 -14.17406 -13.97159 -13.31340 -13.14828 -12.98246 -12.70940 -12.60767 -12.32635 -12.08106 -11.82049 -11.66438 -11.28994 -10.94317 -10.68530 -10.56962 -10.35523 -9.90035 -9.80678 -9.29415 -8.66889 -8.59010 -7.50220 -6.05605 -4.03809 2.59929 2.98580 3.28483 3.35481 3.36887 4.31843 4.41606 4.46259 4.66670 4.78418 5.01560 5.06912 5.22277 5.26497 5.27200 5.33695 5.48059 5.58908 5.66337 5.67542 5.81436 5.96206 6.04756 6.18291 6.26301 6.40949 6.74504 6.99775 7.49976 7.58885 7.86553 8.13868 8.29452 8.64337 9.02906 9.55924 11.07758 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.045774 B = 0.004996 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.554328 B = 5603.388503 C = 6022.810220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.521 3.479 3 O -0.546 6.546 4 N -0.623 5.623 5 C 0.102 3.898 6 C -0.129 4.129 7 C -0.096 4.096 8 H 0.083 0.917 9 C 0.067 3.933 10 N -0.681 5.681 11 C 0.164 3.836 12 C -0.517 4.517 13 H 0.079 0.921 14 C 0.068 3.932 15 N -0.900 5.900 16 Si 0.878 3.122 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.268 1.268 20 C 0.119 3.881 21 H 0.074 0.926 22 H 0.093 0.907 23 H 0.092 0.908 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.336 0.664 31 H -0.016 1.016 32 H 0.022 0.978 33 H 0.264 0.736 34 H 0.086 0.914 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.728 -5.307 -2.979 22.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.311 3.689 3 O -0.423 6.423 4 N -0.358 5.358 5 C -0.021 4.021 6 C -0.167 4.167 7 C -0.115 4.115 8 H 0.101 0.899 9 C -0.063 4.063 10 N -0.311 5.311 11 C 0.037 3.963 12 C -0.555 4.555 13 H 0.097 0.903 14 C -0.134 4.134 15 N -0.539 5.539 16 Si 0.706 3.294 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.193 1.193 20 C -0.002 4.002 21 H 0.093 0.907 22 H 0.111 0.889 23 H 0.111 0.889 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.153 0.847 31 H 0.002 0.998 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.262 -4.150 -3.458 21.938 hybrid contribution 0.416 -1.666 -0.121 1.721 sum -20.846 -5.816 -3.579 21.936 Atomic orbital electron populations 1.21871 0.91826 1.04072 1.05085 1.20462 0.90220 0.82249 0.76006 1.90752 1.70687 1.30665 1.50209 1.48721 1.08348 1.05536 1.73188 1.22014 0.96468 0.82278 1.01366 1.22692 0.94292 0.97318 1.02434 1.22386 0.94417 0.94217 1.00514 0.89893 1.21873 0.89920 0.94644 0.99882 1.60470 1.02469 1.54894 1.13284 1.19990 0.86671 0.93446 0.96215 1.21068 0.89149 1.16419 1.28874 0.90261 1.24915 0.96344 0.96306 0.95796 1.69903 0.99891 1.39978 1.44102 0.86812 0.77912 0.83148 0.81555 1.20140 1.21214 1.19317 1.22236 0.78651 0.97716 1.01640 0.90675 0.88864 0.88908 0.91492 0.91449 0.90313 0.89988 0.95693 0.91405 0.84693 0.99841 0.96019 0.92638 0.89559 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.21 36.01 0.37 -1.00 16 2 C 0.52 7.01 7.96 -10.98 -0.09 6.92 16 3 O -0.55 -10.06 17.35 5.56 0.10 -9.97 16 4 N -0.62 -7.70 3.33 -170.52 -0.57 -8.27 16 5 C 0.10 0.86 5.81 -3.07 -0.02 0.84 16 6 C -0.13 -1.14 6.42 -24.90 -0.16 -1.30 16 7 C -0.10 -1.19 3.21 -88.47 -0.28 -1.47 16 8 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 9 C 0.07 1.04 5.14 -3.82 -0.02 1.02 16 10 N -0.68 -13.68 6.38 -115.05 -0.73 -14.42 16 11 C 0.16 3.97 4.51 -4.98 -0.02 3.95 16 12 C -0.52 -14.90 9.87 -34.44 -0.34 -15.24 16 13 H 0.08 2.49 8.06 -52.48 -0.42 2.06 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 15 N -0.90 -27.92 13.96 55.43 0.77 -27.14 16 16 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 20 C 0.12 1.72 6.27 -2.53 -0.02 1.71 16 21 H 0.07 0.43 6.60 -51.93 -0.34 0.09 16 22 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 25 H 0.07 0.46 8.02 -51.93 -0.42 0.04 16 26 H 0.08 0.67 8.04 -51.92 -0.42 0.26 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.07 1.05 8.04 -51.93 -0.42 0.63 16 30 H 0.34 6.55 8.72 -39.29 -0.34 6.21 16 31 H -0.02 -0.39 7.20 -51.93 -0.37 -0.76 16 32 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.09 1.48 8.04 -51.93 -0.42 1.06 16 35 H 0.07 1.07 7.96 -51.93 -0.41 0.66 16 LS Contribution 289.45 15.07 4.36 4.36 Total: -1.00 -33.95 289.45 -7.07 -41.03 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -5.66 Total: 0.15 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -0.68 Total: -2.69 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -0.53 Total: -49.83 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.10 Total: -9.97 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.95 -7.07 -41.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260148869.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.057 kcal (2) G-P(sol) polarization free energy of solvation -33.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds