Wall clock time and date at job start Mon Mar 30 2020 03:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46938 * 2 1 4 4 C 1.50696 * 109.47703 * 59.99733 * 3 2 1 5 5 H 1.07997 * 120.00403 * 215.27316 * 4 3 2 6 6 C 1.37877 * 119.99974 * 35.26660 * 4 3 2 7 7 N 1.31513 * 120.00054 * 332.36546 * 6 4 3 8 8 Si 1.86804 * 120.00274 * 152.35860 * 6 4 3 9 9 H 1.48501 * 109.46608 * 60.00618 * 8 6 4 10 10 H 1.48496 * 109.47246 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47129 * 300.00851 * 8 6 4 12 12 C 1.53005 * 109.47008 * 179.97438 * 3 2 1 13 13 C 1.52994 * 109.47015 * 305.50341 * 12 3 2 14 14 C 1.53003 * 109.47090 * 299.99688 * 3 2 1 15 15 C 1.53178 * 109.54117 * 307.58886 * 14 3 2 16 16 C 1.53090 * 109.16160 * 183.15438 * 15 14 3 17 17 O 1.42906 * 109.42000 * 57.60689 * 16 15 14 18 18 C 1.42894 * 114.09529 * 298.84378 * 17 16 15 19 19 C 1.53100 * 109.41682 * 61.15602 * 18 17 16 20 20 H 1.09002 * 109.46900 * 60.00275 * 1 2 3 21 21 H 1.08997 * 109.47121 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47389 * 300.00443 * 1 2 3 23 23 H 1.08994 * 109.47243 * 239.99284 * 2 1 3 24 24 H 1.09001 * 109.46681 * 119.99221 * 2 1 3 25 25 H 0.97005 * 120.00387 * 179.97438 * 7 6 4 26 26 H 1.08996 * 109.47191 * 65.50283 * 12 3 2 27 27 H 1.09000 * 109.46891 * 185.50477 * 12 3 2 28 28 H 1.09003 * 109.47229 * 181.48690 * 13 12 3 29 29 H 1.09001 * 109.47449 * 301.47856 * 13 12 3 30 30 H 1.09003 * 109.47484 * 61.48355 * 13 12 3 31 31 H 1.08993 * 109.54028 * 67.85205 * 14 3 2 32 32 H 1.08998 * 109.52169 * 303.05609 * 15 14 3 33 33 H 1.08996 * 109.52388 * 63.24624 * 15 14 3 34 34 H 1.09000 * 109.48181 * 297.62387 * 16 15 14 35 35 H 1.09006 * 109.48054 * 177.59336 * 16 15 14 36 36 H 1.08997 * 109.48329 * 301.17500 * 18 17 16 37 37 H 1.08997 * 109.49357 * 181.14321 * 18 17 16 38 38 H 1.09003 * 109.52064 * 182.48519 * 19 18 17 39 39 H 1.08998 * 109.52158 * 62.29402 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5376 2.1530 1.2304 5 1 1.2766 3.1998 1.1807 6 6 1.4111 1.4667 2.4194 7 7 1.1897 0.1703 2.4101 8 14 1.5543 2.3780 4.0438 9 1 0.5021 3.4232 4.1193 10 1 1.3826 1.4202 5.1655 11 1 2.8924 3.0149 4.1377 12 6 3.5700 1.4425 0.0006 13 6 4.0794 0.6050 1.1753 14 6 1.5299 2.1637 -1.2493 15 6 1.8781 1.3412 -2.4937 16 6 1.4345 2.1073 -3.7427 17 8 2.0680 3.3881 -3.7645 18 6 1.7416 4.2194 -2.6490 19 6 2.1976 3.5382 -1.3559 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8932 -0.5137 0.8901 25 1 1.1011 -0.3127 3.2467 26 1 3.9337 1.0163 -0.9343 27 1 3.9332 2.4655 0.0992 28 1 5.1691 0.6266 1.1913 29 1 3.6942 1.0157 2.1085 30 1 3.7381 -0.4241 1.0629 31 1 0.4491 2.2875 -1.1831 32 1 2.9548 1.1755 -2.5313 33 1 1.3623 0.3819 -2.4524 34 1 0.3525 2.2373 -3.7243 35 1 1.7182 1.5463 -4.6332 36 1 0.6636 4.3769 -2.6161 37 1 2.2464 5.1800 -2.7512 38 1 1.9102 4.1501 -0.5009 39 1 3.2807 3.4168 -1.3706 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261043206.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:40 Heat of formation + Delta-G solvation = -53.421477 kcal Electronic energy + Delta-G solvation = -17616.898501 eV Core-core repulsion = 15138.438676 eV Total energy + Delta-G solvation = -2478.459825 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.26690 -36.80896 -32.69488 -30.94358 -30.78205 -29.70428 -26.79637 -24.48947 -23.03226 -22.50410 -21.29859 -20.02523 -17.68256 -15.90670 -15.56247 -15.45693 -14.58445 -14.17600 -13.72680 -13.49267 -13.15832 -13.02487 -12.84924 -11.92417 -11.61306 -11.23815 -10.99786 -10.94133 -10.85584 -10.73438 -10.51409 -10.24303 -10.20044 -10.05268 -9.80021 -9.69800 -9.44939 -9.14410 -8.73763 -8.62856 -8.43041 -7.79792 -5.81533 -3.94746 3.30495 3.38018 3.43233 4.33246 4.44146 5.16419 5.44656 5.55292 5.64105 5.72619 5.79819 5.92189 6.12674 6.18383 6.35191 6.38759 6.50923 6.59980 6.63843 6.73280 6.84208 6.88662 6.99649 7.03227 7.05737 7.24260 7.27772 7.30110 7.37231 7.58026 7.65442 7.76511 7.83987 7.95204 8.24055 8.46318 8.68393 9.03486 9.63588 10.95231 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031879 B = 0.010237 C = 0.009565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.110534 B = 2734.472603 C = 2926.744235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.106 4.106 3 C 0.075 3.925 4 C -0.509 4.509 5 H 0.054 0.946 6 C 0.079 3.921 7 N -0.852 5.852 8 Si 0.861 3.139 9 H -0.280 1.280 10 H -0.290 1.290 11 H -0.278 1.278 12 C -0.104 4.104 13 C -0.135 4.135 14 C -0.070 4.070 15 C -0.153 4.153 16 C 0.061 3.939 17 O -0.393 6.393 18 C 0.059 3.941 19 C -0.145 4.145 20 H 0.009 0.991 21 H 0.008 0.992 22 H 0.077 0.923 23 H -0.007 1.007 24 H 0.121 0.879 25 H 0.253 0.747 26 H 0.025 0.975 27 H 0.041 0.959 28 H 0.014 0.986 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.081 0.919 36 H 0.041 0.959 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.915 1.991 -6.380 6.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.143 4.143 3 C 0.074 3.926 4 C -0.546 4.546 5 H 0.072 0.928 6 C -0.123 4.123 7 N -0.490 5.490 8 Si 0.689 3.311 9 H -0.206 1.206 10 H -0.216 1.216 11 H -0.204 1.204 12 C -0.142 4.142 13 C -0.192 4.192 14 C -0.088 4.088 15 C -0.191 4.191 16 C -0.016 4.016 17 O -0.312 6.312 18 C -0.017 4.017 19 C -0.183 4.183 20 H 0.028 0.972 21 H 0.028 0.972 22 H 0.096 0.904 23 H 0.012 0.988 24 H 0.138 0.862 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.034 0.966 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.996 1.881 -6.394 6.739 hybrid contribution -0.110 0.415 1.185 1.260 sum 0.885 2.296 -5.209 5.761 Atomic orbital electron populations 1.21485 0.97926 0.97181 1.00046 1.22208 0.95257 0.96992 0.99867 1.18229 0.90039 0.93350 0.90968 1.20912 1.44415 0.95951 0.93335 0.92751 1.24799 0.94428 0.94583 0.98473 1.70337 1.45652 1.07821 1.25219 0.87166 0.78836 0.80345 0.84793 1.20580 1.21571 1.20359 1.21727 0.99358 0.97762 0.95350 1.21708 0.96277 1.00406 1.00783 1.21253 0.99286 0.93299 0.94983 1.22382 1.01829 0.99663 0.95196 1.22594 0.96014 0.84283 0.98664 1.87817 1.71340 1.26991 1.45076 1.22639 0.98888 0.93291 0.86922 1.22260 1.01312 0.98256 0.96461 0.97237 0.97242 0.90384 0.98818 0.86162 0.93567 0.95619 0.94001 0.96642 0.91721 0.93261 0.92145 0.91685 0.91013 0.94003 0.90128 0.94023 0.90088 0.90771 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.49 8.58 37.16 0.32 -2.17 16 2 C -0.11 -2.44 3.36 -26.73 -0.09 -2.53 16 3 C 0.07 1.66 0.09 -155.66 -0.01 1.65 16 4 C -0.51 -12.61 6.51 -34.44 -0.22 -12.84 16 5 H 0.05 1.38 6.80 -52.49 -0.36 1.03 16 6 C 0.08 1.97 2.85 -17.82 -0.05 1.92 16 7 N -0.85 -21.57 7.85 55.43 0.44 -21.14 16 8 Si 0.86 20.01 29.46 -169.99 -5.01 15.01 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 12 C -0.10 -2.24 4.10 -26.73 -0.11 -2.35 16 13 C -0.13 -2.92 8.79 37.15 0.33 -2.60 16 14 C -0.07 -1.39 1.05 -90.44 -0.09 -1.49 16 15 C -0.15 -2.75 4.56 -26.59 -0.12 -2.87 16 16 C 0.06 0.98 6.84 37.20 0.25 1.23 16 17 O -0.39 -6.82 10.77 -35.23 -0.38 -7.20 16 18 C 0.06 0.96 6.84 37.21 0.25 1.22 16 19 C -0.15 -2.68 4.74 -26.59 -0.13 -2.81 16 20 H 0.01 0.19 6.35 -51.93 -0.33 -0.14 16 21 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 22 H 0.08 1.97 5.78 -51.93 -0.30 1.67 16 23 H -0.01 -0.15 6.40 -51.93 -0.33 -0.48 16 24 H 0.12 3.03 3.61 -52.02 -0.19 2.84 16 25 H 0.25 6.31 8.31 -40.82 -0.34 5.97 16 26 H 0.03 0.52 6.39 -51.93 -0.33 0.19 16 27 H 0.04 0.90 6.61 -51.93 -0.34 0.55 16 28 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 1.53 5.76 -51.93 -0.30 1.23 16 30 H 0.05 1.08 6.43 -51.93 -0.33 0.75 16 31 H 0.06 1.29 6.86 -51.93 -0.36 0.93 16 32 H 0.06 1.20 6.44 -51.93 -0.33 0.87 16 33 H 0.07 1.30 6.22 -51.93 -0.32 0.98 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.07 1.42 6.88 -51.93 -0.36 1.06 16 39 H 0.07 1.26 6.27 -51.93 -0.33 0.93 16 LS Contribution 271.67 15.07 4.09 4.09 Total: -1.00 -24.96 271.67 -6.72 -31.68 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.18 Total: 1.19 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 0.32 Total: -23.63 kcal Atomic # 7 Polarization: -21.57 SS G_CDS: 0.44 Total: -21.14 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.38 Total: -7.20 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.01 Total: 15.01 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -24.96 -6.72 -31.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261043206.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.745 kcal (2) G-P(sol) polarization free energy of solvation -24.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds