Wall clock time and date at job start Mon Mar 30 2020 03:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46938 * 2 1 4 4 C 1.50696 * 109.47703 * 59.99733 * 3 2 1 5 5 H 1.07997 * 120.00403 * 215.27316 * 4 3 2 6 6 C 1.37877 * 119.99974 * 35.26660 * 4 3 2 7 7 N 1.31513 * 120.00054 * 332.36546 * 6 4 3 8 8 Si 1.86804 * 120.00274 * 152.35860 * 6 4 3 9 9 H 1.48501 * 109.46608 * 60.00618 * 8 6 4 10 10 H 1.48496 * 109.47246 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47129 * 300.00851 * 8 6 4 12 12 C 1.53005 * 109.47008 * 179.97438 * 3 2 1 13 13 C 1.52994 * 109.47015 * 305.50341 * 12 3 2 14 14 C 1.53003 * 109.47090 * 299.99688 * 3 2 1 15 15 C 1.53178 * 109.54117 * 307.58886 * 14 3 2 16 16 C 1.53090 * 109.16160 * 183.15438 * 15 14 3 17 17 O 1.42906 * 109.42000 * 57.60689 * 16 15 14 18 18 C 1.42894 * 114.09529 * 298.84378 * 17 16 15 19 19 C 1.53100 * 109.41682 * 61.15602 * 18 17 16 20 20 H 1.09002 * 109.46900 * 60.00275 * 1 2 3 21 21 H 1.08997 * 109.47121 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47389 * 300.00443 * 1 2 3 23 23 H 1.08994 * 109.47243 * 239.99284 * 2 1 3 24 24 H 1.09001 * 109.46681 * 119.99221 * 2 1 3 25 25 H 0.97005 * 120.00387 * 179.97438 * 7 6 4 26 26 H 1.08996 * 109.47191 * 65.50283 * 12 3 2 27 27 H 1.09000 * 109.46891 * 185.50477 * 12 3 2 28 28 H 1.09003 * 109.47229 * 181.48690 * 13 12 3 29 29 H 1.09001 * 109.47449 * 301.47856 * 13 12 3 30 30 H 1.09003 * 109.47484 * 61.48355 * 13 12 3 31 31 H 1.08993 * 109.54028 * 67.85205 * 14 3 2 32 32 H 1.08998 * 109.52169 * 303.05609 * 15 14 3 33 33 H 1.08996 * 109.52388 * 63.24624 * 15 14 3 34 34 H 1.09000 * 109.48181 * 297.62387 * 16 15 14 35 35 H 1.09006 * 109.48054 * 177.59336 * 16 15 14 36 36 H 1.08997 * 109.48329 * 301.17500 * 18 17 16 37 37 H 1.08997 * 109.49357 * 181.14321 * 18 17 16 38 38 H 1.09003 * 109.52064 * 182.48519 * 19 18 17 39 39 H 1.08998 * 109.52158 * 62.29402 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5376 2.1530 1.2304 5 1 1.2766 3.1998 1.1807 6 6 1.4111 1.4667 2.4194 7 7 1.1897 0.1703 2.4101 8 14 1.5543 2.3780 4.0438 9 1 0.5021 3.4232 4.1193 10 1 1.3826 1.4202 5.1655 11 1 2.8924 3.0149 4.1377 12 6 3.5700 1.4425 0.0006 13 6 4.0794 0.6050 1.1753 14 6 1.5299 2.1637 -1.2493 15 6 1.8781 1.3412 -2.4937 16 6 1.4345 2.1073 -3.7427 17 8 2.0680 3.3881 -3.7645 18 6 1.7416 4.2194 -2.6490 19 6 2.1976 3.5382 -1.3559 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8932 -0.5137 0.8901 25 1 1.1011 -0.3127 3.2467 26 1 3.9337 1.0163 -0.9343 27 1 3.9332 2.4655 0.0992 28 1 5.1691 0.6266 1.1913 29 1 3.6942 1.0157 2.1085 30 1 3.7381 -0.4241 1.0629 31 1 0.4491 2.2875 -1.1831 32 1 2.9548 1.1755 -2.5313 33 1 1.3623 0.3819 -2.4524 34 1 0.3525 2.2373 -3.7243 35 1 1.7182 1.5463 -4.6332 36 1 0.6636 4.3769 -2.6161 37 1 2.2464 5.1800 -2.7512 38 1 1.9102 4.1501 -0.5009 39 1 3.2807 3.4168 -1.3706 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261043206.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:40 Heat of formation + Delta-G solvation = -65.639757 kcal Electronic energy + Delta-G solvation = -17617.428325 eV Core-core repulsion = 15138.438676 eV Total energy + Delta-G solvation = -2478.989649 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.77253 -38.39036 -34.41195 -32.65341 -32.29841 -31.35743 -28.55056 -26.21136 -24.52389 -24.07146 -23.04362 -21.57875 -19.41453 -17.59293 -17.19961 -16.79863 -16.37420 -15.57780 -15.28754 -15.17170 -14.89421 -14.76961 -14.40151 -13.56056 -13.21089 -12.93248 -12.76098 -12.68959 -12.54435 -12.36864 -12.18658 -12.03300 -11.95922 -11.72016 -11.46093 -11.32342 -11.04591 -10.81345 -10.45888 -10.39045 -10.03821 -9.69562 -7.74524 -5.90030 1.41473 1.48398 1.52571 2.52192 3.07831 3.21759 4.11673 4.12857 4.26998 4.29848 4.46868 4.61683 4.63937 4.66808 4.82375 4.83622 4.88659 5.00438 5.03637 5.09729 5.14267 5.26294 5.31258 5.34163 5.43514 5.49771 5.53597 5.58183 5.68983 5.78255 5.88861 5.97720 6.15572 6.36165 6.37480 6.59497 6.77088 7.13000 7.68380 8.99658 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031879 B = 0.010237 C = 0.009565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.110534 B = 2734.472603 C = 2926.744235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.103 4.103 3 C 0.071 3.929 4 C -0.518 4.518 5 H 0.042 0.958 6 C 0.053 3.947 7 N -0.861 5.861 8 Si 0.899 3.101 9 H -0.283 1.283 10 H -0.292 1.292 11 H -0.281 1.281 12 C -0.100 4.100 13 C -0.129 4.129 14 C -0.068 4.068 15 C -0.147 4.147 16 C 0.062 3.938 17 O -0.401 6.401 18 C 0.062 3.938 19 C -0.141 4.141 20 H 0.020 0.980 21 H 0.013 0.987 22 H 0.050 0.950 23 H 0.003 0.997 24 H 0.102 0.898 25 H 0.250 0.750 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.037 0.963 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.106 0.894 36 H 0.048 0.952 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.292 2.327 -7.705 8.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.140 4.140 3 C 0.070 3.930 4 C -0.555 4.555 5 H 0.060 0.940 6 C -0.147 4.147 7 N -0.499 5.499 8 Si 0.727 3.273 9 H -0.209 1.209 10 H -0.218 1.218 11 H -0.207 1.207 12 C -0.138 4.138 13 C -0.186 4.186 14 C -0.086 4.086 15 C -0.185 4.185 16 C -0.014 4.014 17 O -0.321 6.321 18 C -0.014 4.014 19 C -0.179 4.179 20 H 0.039 0.961 21 H 0.032 0.968 22 H 0.069 0.931 23 H 0.021 0.979 24 H 0.119 0.881 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.124 0.876 36 H 0.066 0.934 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.373 2.221 -7.719 8.149 hybrid contribution -0.236 0.303 1.615 1.660 sum 1.137 2.525 -6.104 6.702 Atomic orbital electron populations 1.21341 0.97891 0.97187 0.99186 1.22099 0.95223 0.97373 0.99308 1.18243 0.90578 0.92928 0.91213 1.21082 1.44341 0.95488 0.94624 0.94010 1.25137 0.94624 0.95050 0.99914 1.70443 1.46113 1.08242 1.25143 0.86580 0.78294 0.79418 0.83000 1.20942 1.21766 1.20655 1.21666 0.98699 0.97679 0.95785 1.21626 0.97634 0.99677 0.99689 1.21134 0.98195 0.94361 0.94956 1.22296 1.01495 0.99457 0.95213 1.22682 0.96434 0.83809 0.98525 1.87818 1.71659 1.27432 1.45142 1.22669 0.99569 0.93775 0.85394 1.22181 1.00795 0.97431 0.97475 0.96106 0.96753 0.93094 0.97854 0.88090 0.93947 0.94375 0.94192 0.94414 0.94034 0.94062 0.93820 0.92089 0.91262 0.93267 0.87611 0.93360 0.87855 0.92026 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.45 8.58 71.98 0.62 -3.84 16 2 C -0.10 -4.66 3.36 30.59 0.10 -4.56 16 3 C 0.07 3.11 0.09 -52.93 0.00 3.10 16 4 C -0.52 -25.73 6.51 25.60 0.17 -25.56 16 5 H 0.04 2.15 6.80 -2.91 -0.02 2.13 16 6 C 0.05 2.68 2.85 84.65 0.24 2.92 16 7 N -0.86 -43.87 7.85 21.45 0.17 -43.70 16 8 Si 0.90 41.25 29.46 68.60 2.02 43.27 16 9 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 10 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 C -0.10 -4.20 4.10 30.59 0.13 -4.08 16 13 C -0.13 -5.49 8.79 71.98 0.63 -4.86 16 14 C -0.07 -2.63 1.05 -10.67 -0.01 -2.64 16 15 C -0.15 -4.96 4.56 30.68 0.14 -4.82 16 16 C 0.06 1.79 6.84 72.01 0.49 2.29 16 17 O -0.40 -12.71 10.77 -148.98 -1.60 -14.31 16 18 C 0.06 1.87 6.84 72.02 0.49 2.36 16 19 C -0.14 -5.01 4.74 30.69 0.15 -4.87 16 20 H 0.02 0.85 6.35 -2.39 -0.02 0.84 16 21 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 22 H 0.05 2.57 5.78 -2.38 -0.01 2.56 16 23 H 0.00 0.13 6.40 -2.39 -0.02 0.11 16 24 H 0.10 5.07 3.61 -2.56 -0.01 5.06 16 25 H 0.25 12.56 8.31 -92.70 -0.77 11.79 16 26 H 0.04 1.49 6.39 -2.39 -0.02 1.47 16 27 H 0.04 1.66 6.61 -2.39 -0.02 1.65 16 28 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.04 1.94 5.76 -2.39 -0.01 1.93 16 30 H 0.04 1.79 6.43 -2.39 -0.02 1.77 16 31 H 0.04 1.82 6.86 -2.39 -0.02 1.81 16 32 H 0.06 2.11 6.44 -2.39 -0.02 2.09 16 33 H 0.07 2.36 6.22 -2.39 -0.01 2.35 16 34 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.11 2.55 8.14 -2.38 -0.02 2.53 16 36 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.06 2.32 6.88 -2.39 -0.02 2.30 16 39 H 0.06 2.24 6.27 -2.39 -0.01 2.22 16 Total: -1.00 -51.42 271.67 4.75 -46.67 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 1.02 Total: 12.61 kcal Atomic # 6 Polarization: -47.69 SS G_CDS: 3.14 Total: -44.54 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.17 Total: -43.70 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -1.60 Total: -14.31 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.02 Total: 43.27 kcal Total: -51.42 4.75 -46.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261043206.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.969 kcal (2) G-P(sol) polarization free energy of solvation -51.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds