Wall clock time and date at job start Mon Mar 30 2020 02:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21277 * 120.00364 * 2 1 4 4 N 1.34778 * 119.99670 * 180.02562 * 2 1 3 5 5 C 1.46923 * 120.63618 * 4.83382 * 4 2 1 6 6 C 1.53190 * 108.77698 * 233.61222 * 5 4 2 7 7 C 1.53034 * 109.31436 * 305.36170 * 6 5 4 8 8 C 1.53041 * 109.53826 * 61.36257 * 7 6 5 9 9 H 1.08999 * 109.49440 * 58.62279 * 8 7 6 10 10 C 1.52997 * 109.50036 * 178.68417 * 8 7 6 11 11 H 1.09009 * 109.47177 * 59.93584 * 10 8 7 12 12 N 1.46900 * 109.47194 * 299.94151 * 10 8 7 13 13 C 1.50701 * 109.47530 * 179.97438 * 10 8 7 14 14 H 1.08004 * 119.99321 * 34.57750 * 13 10 8 15 15 C 1.37870 * 120.00355 * 214.57365 * 13 10 8 16 16 N 1.31512 * 120.00091 * 184.37641 * 15 13 10 17 17 Si 1.86803 * 119.99875 * 4.37583 * 15 13 10 18 18 H 1.48500 * 109.47027 * 94.30680 * 17 15 13 19 19 H 1.48503 * 109.47013 * 214.30637 * 17 15 13 20 20 H 1.48500 * 109.47257 * 334.30246 * 17 15 13 21 21 C 1.46938 * 120.60271 * 184.85421 * 4 2 1 22 22 H 1.09001 * 109.46969 * 174.78827 * 1 2 3 23 23 H 1.08999 * 109.46847 * 294.78650 * 1 2 3 24 24 H 1.08997 * 109.46828 * 54.78617 * 1 2 3 25 25 H 1.08992 * 109.58780 * 113.82125 * 5 4 2 26 26 H 1.09005 * 109.69837 * 353.46498 * 5 4 2 27 27 H 1.08998 * 109.49545 * 185.40809 * 6 5 4 28 28 H 1.08999 * 109.52250 * 65.32940 * 6 5 4 29 29 H 1.09008 * 109.46033 * 301.34643 * 7 6 5 30 30 H 1.08999 * 109.46335 * 181.38761 * 7 6 5 31 31 H 1.00907 * 111.00260 * 174.31954 * 12 10 8 32 32 H 1.00900 * 110.99861 * 298.27038 * 12 10 8 33 33 H 0.96999 * 120.00122 * 180.02562 * 16 15 13 34 34 H 1.08998 * 109.61486 * 6.62298 * 21 4 2 35 35 H 1.08993 * 109.56165 * 246.19262 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4642 -2.4454 -0.1076 6 6 1.8870 -3.3468 1.0566 7 6 3.4115 -3.4800 1.0659 8 6 4.0445 -2.1013 1.2679 9 1 3.6922 -1.6733 2.2063 10 6 5.5676 -2.2398 1.3098 11 1 5.9195 -2.6680 0.3711 12 7 5.9488 -3.1198 2.4226 13 6 6.1903 -0.8819 1.5081 14 1 5.6921 -0.1434 2.1187 15 6 7.3959 -0.5824 0.9101 16 7 7.9815 0.5701 1.1519 17 14 8.1977 -1.8136 -0.2436 18 1 7.8131 -1.5029 -1.6438 19 1 9.6741 -1.7320 -0.1060 20 1 7.7433 -3.1844 0.1021 21 6 3.6462 -1.1851 0.1065 22 1 -0.3633 -1.0234 -0.0934 23 1 -0.3633 0.4308 0.9330 24 1 -0.3633 0.5926 -0.8396 25 1 1.7153 -2.9270 -1.0525 26 1 0.3895 -2.2690 -0.0616 27 1 1.4364 -4.3320 0.9361 28 1 1.5545 -2.9073 1.9970 29 1 3.7454 -3.8971 0.1157 30 1 3.7134 -4.1408 1.8784 31 1 6.9413 -3.3018 2.4161 32 1 5.6584 -2.7307 3.3071 33 1 8.8296 0.7810 0.7309 34 1 4.0116 -0.1757 0.2955 35 1 4.0753 -1.5635 -0.8212 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261242291.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:41 Heat of formation + Delta-G solvation = -44.102962 kcal Electronic energy + Delta-G solvation = -16486.562729 eV Core-core repulsion = 13904.966641 eV Total energy + Delta-G solvation = -2581.596087 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.78179 -37.32644 -34.91594 -32.38288 -31.51297 -30.75681 -28.89577 -26.19277 -24.50313 -23.15683 -21.06499 -19.33100 -18.57369 -17.09090 -16.79739 -15.57640 -15.20726 -14.59976 -14.31179 -14.12765 -13.58097 -13.14848 -12.88956 -12.79807 -12.70479 -12.45374 -11.89562 -11.77914 -11.36772 -11.23834 -10.96023 -10.81559 -10.47005 -10.22868 -9.73353 -9.72520 -9.42889 -9.18670 -8.63217 -8.20820 -7.43730 -6.13535 -4.16292 2.96490 3.23129 3.32781 3.33716 3.39497 4.34545 4.79613 4.88077 5.15493 5.16795 5.21994 5.45175 5.48029 5.58869 5.60992 5.77395 5.94459 5.96118 6.08596 6.22434 6.30774 6.37311 6.55603 6.70019 6.86551 6.95372 7.06586 7.27890 7.61596 7.82256 8.30575 8.41352 8.54725 8.64161 8.93709 9.48930 10.99593 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.028995 B = 0.009388 C = 0.007924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.449617 B = 2981.953141 C = 3532.812990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.505 3.495 3 O -0.545 6.545 4 N -0.611 5.611 5 C 0.101 3.899 6 C -0.136 4.136 7 C -0.111 4.111 8 C -0.073 4.073 9 H 0.060 0.940 10 C 0.181 3.819 11 H 0.043 0.957 12 N -0.852 5.852 13 C -0.548 4.548 14 H 0.072 0.928 15 C 0.075 3.925 16 N -0.892 5.892 17 Si 0.871 3.129 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.258 1.258 21 C 0.124 3.876 22 H 0.080 0.920 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.325 0.675 32 H 0.325 0.675 33 H 0.264 0.736 34 H 0.106 0.894 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.590 -8.503 -2.369 16.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.293 3.707 3 O -0.422 6.422 4 N -0.345 5.345 5 C -0.022 4.022 6 C -0.174 4.174 7 C -0.148 4.148 8 C -0.093 4.093 9 H 0.078 0.922 10 C 0.071 3.929 11 H 0.061 0.939 12 N -0.378 5.378 13 C -0.588 4.588 14 H 0.090 0.910 15 C -0.129 4.129 16 N -0.530 5.530 17 Si 0.698 3.302 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.183 1.183 21 C 0.002 3.998 22 H 0.099 0.901 23 H 0.109 0.891 24 H 0.107 0.893 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.074 0.926 34 H 0.125 0.875 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.595 -8.369 -2.778 16.205 hybrid contribution 1.159 0.276 -0.350 1.242 sum -12.436 -8.094 -3.128 15.164 Atomic orbital electron populations 1.22028 0.92838 1.04091 1.04849 1.20702 0.90256 0.83505 0.76248 1.90745 1.70528 1.31035 1.49924 1.48322 1.08473 1.05467 1.72208 1.21869 0.96701 0.84638 0.98998 1.21965 0.98315 0.98819 0.98288 1.21561 0.92566 0.98590 1.02122 1.21299 0.97231 0.93333 0.97487 0.92168 1.19391 0.90399 0.91498 0.91620 0.93930 1.59550 1.20114 1.51352 1.06823 1.21740 1.05611 0.99278 1.32177 0.91018 1.25115 0.96828 0.95015 0.95904 1.69934 1.17334 1.22536 1.43150 0.86931 0.78660 0.82697 0.81933 1.20269 1.21452 1.18270 1.21692 0.76574 1.03577 0.97975 0.90117 0.89093 0.89269 0.91694 0.89788 0.91506 0.91874 0.92886 0.90599 0.86430 0.86522 0.92641 0.87547 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 10.12 36.01 0.36 -1.61 16 2 C 0.50 8.64 7.80 -10.98 -0.09 8.56 16 3 O -0.54 -12.22 16.53 5.56 0.09 -12.13 16 4 N -0.61 -10.06 2.97 -172.77 -0.51 -10.58 16 5 C 0.10 1.21 6.35 -3.71 -0.02 1.18 16 6 C -0.14 -1.67 6.08 -26.62 -0.16 -1.83 16 7 C -0.11 -1.75 5.03 -26.69 -0.13 -1.88 16 8 C -0.07 -1.43 2.08 -90.50 -0.19 -1.62 16 9 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 10 C 0.18 4.06 1.94 -68.87 -0.13 3.92 16 11 H 0.04 1.00 5.13 -51.92 -0.27 0.73 16 12 N -0.85 -17.34 8.43 -5.65 -0.05 -17.39 16 13 C -0.55 -14.89 7.99 -34.44 -0.28 -15.16 16 14 H 0.07 2.19 8.06 -52.48 -0.42 1.77 16 15 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 16 N -0.89 -27.21 13.96 55.43 0.77 -26.44 16 17 Si 0.87 21.01 27.26 -169.99 -4.63 16.38 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 20 H -0.26 -5.90 6.42 56.52 0.36 -5.53 16 21 C 0.12 2.49 5.34 -3.70 -0.02 2.47 16 22 H 0.08 0.66 5.10 -51.93 -0.26 0.40 16 23 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 24 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 0.75 5.05 -51.93 -0.26 0.49 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 30 H 0.08 1.23 7.57 -51.93 -0.39 0.83 16 31 H 0.33 6.72 9.06 -39.29 -0.36 6.36 16 32 H 0.32 6.42 8.99 -39.29 -0.35 6.07 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.11 2.60 6.33 -51.93 -0.33 2.27 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 276.70 15.07 4.17 4.17 Total: -1.00 -32.23 276.70 -6.12 -38.34 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -5.20 Total: 11.58 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -0.76 Total: -3.95 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.21 Total: -54.40 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.63 Total: 16.38 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.23 -6.12 -38.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261242291.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.758 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds