Wall clock time and date at job start Mon Mar 30 2020 02:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 110.99925 * 2 1 4 4 C 1.46896 * 111.00025 * 123.95709 * 2 1 3 5 5 C 1.52998 * 109.47146 * 170.00212 * 4 2 1 6 6 N 1.46499 * 109.47349 * 179.97438 * 5 4 2 7 7 C 1.46766 * 124.34634 * 90.00069 * 6 5 4 8 8 C 1.54480 * 105.47504 * 163.00462 * 7 6 5 9 9 H 1.08998 * 110.96857 * 267.29572 * 8 7 6 10 10 C 1.50696 * 110.97036 * 143.53023 * 8 7 6 11 11 H 1.08004 * 120.00032 * 0.02562 * 10 8 7 12 12 C 1.37879 * 120.00109 * 180.02562 * 10 8 7 13 13 N 1.31510 * 119.99771 * 0.02562 * 12 10 8 14 14 Si 1.86804 * 119.99938 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47080 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.46831 * 119.99975 * 14 12 10 17 17 H 1.48497 * 109.47135 * 239.99780 * 14 12 10 18 18 C 1.54631 * 101.76379 * 25.41563 * 8 7 6 19 19 C 1.34417 * 124.35563 * 270.02479 * 6 5 4 20 20 O 1.21283 * 124.93738 * 0.36639 * 19 6 5 21 21 H 1.09001 * 109.47313 * 296.04497 * 1 2 3 22 22 H 1.09003 * 109.47506 * 56.04751 * 1 2 3 23 23 H 1.08997 * 109.46580 * 176.04397 * 1 2 3 24 24 H 1.08997 * 109.47395 * 183.95345 * 3 2 1 25 25 H 1.09005 * 109.47451 * 303.95542 * 3 2 1 26 26 H 1.09003 * 109.46742 * 63.95341 * 3 2 1 27 27 H 1.08993 * 109.47661 * 50.00177 * 4 2 1 28 28 H 1.09007 * 109.46654 * 289.99911 * 4 2 1 29 29 H 1.09009 * 109.47228 * 59.99591 * 5 4 2 30 30 H 1.09002 * 109.47081 * 299.99917 * 5 4 2 31 31 H 1.09000 * 110.24445 * 282.00685 * 7 6 5 32 32 H 1.08996 * 110.24758 * 44.00415 * 7 6 5 33 33 H 0.97008 * 119.99667 * 179.97438 * 13 12 10 34 34 H 1.08997 * 110.48613 * 216.52254 * 18 8 7 35 35 H 1.09001 * 110.59766 * 93.93200 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5045 -0.9553 0.9703 6 7 4.0296 -1.7187 2.1050 7 6 4.1301 -3.1825 2.1428 8 6 5.1099 -3.4988 3.2944 9 1 6.1311 -3.5890 2.9240 10 6 4.6930 -4.7462 4.0300 11 1 3.8093 -5.2851 3.7216 12 6 5.4397 -5.1996 5.0967 13 7 6.5155 -4.5431 5.4726 14 14 4.9232 -6.7463 6.0081 15 1 3.6871 -7.2934 5.3935 16 1 6.0082 -7.7566 5.9227 17 1 4.6636 -6.4179 7.4328 18 6 4.9552 -2.2493 4.1921 19 6 4.4809 -1.1688 3.2455 20 8 4.5048 0.0207 3.4811 21 1 -0.3634 0.4512 0.9233 22 1 -0.3634 0.5740 -0.8524 23 1 -0.3632 -1.0252 -0.0709 24 1 3.0828 1.3433 -0.0708 25 1 1.5898 1.9164 -0.8524 26 1 1.7043 1.8723 0.9233 27 1 1.5091 -1.7407 1.1755 28 1 1.7975 -0.2247 2.0628 29 1 3.9910 0.0194 0.9322 30 1 3.7024 -1.4965 0.0450 31 1 3.1538 -3.6224 2.3466 32 1 4.5241 -3.5580 1.1985 33 1 7.0406 -4.8619 6.2233 34 1 5.9135 -1.9759 4.6338 35 1 4.2137 -2.4262 4.9712 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261294317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:15 Heat of formation + Delta-G solvation = -34.690359 kcal Electronic energy + Delta-G solvation = -15886.457743 eV Core-core repulsion = 13305.269817 eV Total energy + Delta-G solvation = -2581.187926 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.57003 -37.44460 -35.65440 -33.46711 -31.48416 -28.45884 -27.63582 -26.83719 -24.96469 -23.68965 -21.15175 -20.30422 -18.55714 -16.80830 -16.04364 -15.58954 -15.39299 -14.75425 -14.71617 -14.32153 -14.09291 -13.21035 -12.73383 -12.54334 -12.47464 -12.27852 -12.20739 -11.81849 -11.78281 -11.34134 -11.05104 -10.85638 -10.73863 -10.64527 -10.23764 -9.53565 -9.39656 -8.83545 -8.48456 -8.46746 -8.03419 -6.15868 -4.21270 3.23892 3.32773 3.35194 3.37512 3.53133 4.17911 4.34280 4.99221 5.09349 5.17520 5.18361 5.33539 5.46984 5.57134 5.62800 5.69006 5.74757 5.82194 5.89583 6.03293 6.13905 6.21322 6.46037 6.55760 6.79058 6.90805 6.93980 7.30906 7.35400 7.58071 7.79723 7.84711 8.19819 8.80760 8.97706 9.45007 10.94165 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.044225 B = 0.006005 C = 0.005571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.974698 B = 4661.486102 C = 5025.050086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.020 3.980 4 C 0.038 3.962 5 C 0.130 3.870 6 N -0.623 5.623 7 C 0.106 3.894 8 C 0.045 3.955 9 H 0.048 0.952 10 C -0.519 4.519 11 H 0.063 0.937 12 C 0.066 3.934 13 N -0.885 5.885 14 Si 0.895 3.105 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.131 4.131 19 C 0.512 3.488 20 O -0.565 6.565 21 H 0.024 0.976 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.027 0.973 27 H 0.077 0.923 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.263 0.737 34 H 0.090 0.910 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.085 5.300 -8.985 13.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.128 4.128 4 C -0.091 4.091 5 C 0.007 3.993 6 N -0.357 5.357 7 C -0.016 4.016 8 C 0.026 3.974 9 H 0.066 0.934 10 C -0.557 4.557 11 H 0.081 0.919 12 C -0.137 4.137 13 N -0.522 5.522 14 Si 0.723 3.277 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.210 1.210 18 C -0.171 4.171 19 C 0.303 3.697 20 O -0.444 6.444 21 H 0.043 0.957 22 H 0.086 0.914 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.045 0.955 27 H 0.096 0.904 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.788 5.712 -9.225 13.356 hybrid contribution -0.567 -0.444 1.296 1.483 sum -8.355 5.268 -7.929 12.666 Atomic orbital electron populations 1.22367 0.87344 1.02253 1.00319 1.61959 1.07859 1.14005 1.43222 1.22455 1.01270 0.88742 1.00338 1.22561 0.96650 0.98426 0.91426 1.21174 0.92215 0.96907 0.89027 1.48450 1.62478 1.08728 1.16055 1.22455 1.01084 0.77206 1.00837 1.19655 0.94876 0.93049 0.89778 0.93372 1.21005 1.11228 1.08926 1.14576 0.91903 1.24993 0.94663 0.97043 0.97031 1.69963 1.15780 1.39267 1.27170 0.86487 0.78646 0.82958 0.79644 1.19648 1.20917 1.20955 1.22447 1.02601 0.94272 0.97811 1.21900 0.75235 0.89461 0.83126 1.90582 1.57927 1.17252 1.78687 0.95726 0.91445 0.91310 0.90948 0.91554 0.95480 0.90444 0.94374 0.90765 0.90127 0.92032 0.92195 0.92716 0.89132 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.57 60.07 0.57 0.84 16 2 N -0.55 -6.90 5.02 -251.26 -1.26 -8.16 16 3 C 0.02 0.23 9.32 60.06 0.56 0.79 16 4 C 0.04 0.56 5.28 -3.83 -0.02 0.54 16 5 C 0.13 2.05 5.86 -4.04 -0.02 2.03 16 6 N -0.62 -11.84 2.93 -172.41 -0.51 -12.35 16 7 C 0.11 2.03 6.90 -3.12 -0.02 2.01 16 8 C 0.05 1.05 2.97 -90.14 -0.27 0.78 16 9 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 10 C -0.52 -13.10 8.39 -34.44 -0.29 -13.39 16 11 H 0.06 1.54 7.60 -52.48 -0.40 1.14 16 12 C 0.07 1.72 5.37 -17.82 -0.10 1.62 16 13 N -0.88 -24.20 12.84 55.43 0.71 -23.49 16 14 Si 0.89 20.14 29.54 -169.99 -5.02 15.12 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 C -0.13 -3.04 5.81 -26.74 -0.16 -3.20 16 19 C 0.51 11.36 8.02 -10.86 -0.09 11.27 16 20 O -0.56 -13.79 17.59 5.55 0.10 -13.69 16 21 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 22 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 23 H 0.07 0.68 8.12 -51.93 -0.42 0.25 16 24 H 0.07 0.86 6.47 -51.93 -0.34 0.52 16 25 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 26 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.08 1.10 8.06 -51.93 -0.42 0.69 16 28 H 0.04 0.63 8.12 -51.92 -0.42 0.21 16 29 H 0.07 1.22 6.34 -51.92 -0.33 0.89 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 1.15 7.74 -51.93 -0.40 0.75 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 34 H 0.09 2.24 8.14 -51.93 -0.42 1.82 16 35 H 0.09 2.17 7.89 -51.93 -0.41 1.76 16 LS Contribution 290.48 15.07 4.38 4.38 Total: -1.00 -28.60 290.48 -7.08 -35.67 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -5.65 Total: -0.79 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 0.17 Total: 3.30 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: -1.06 Total: -43.99 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.10 Total: -13.69 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.60 -7.08 -35.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261294317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.985 kcal (2) G-P(sol) polarization free energy of solvation -28.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds