Wall clock time and date at job start Mon Mar 30 2020 02:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 110.99925 * 2 1 4 4 C 1.46896 * 111.00025 * 123.95709 * 2 1 3 5 5 C 1.52998 * 109.47146 * 170.00212 * 4 2 1 6 6 N 1.46499 * 109.47349 * 179.97438 * 5 4 2 7 7 C 1.46766 * 124.34634 * 90.00069 * 6 5 4 8 8 C 1.54480 * 105.47504 * 163.00462 * 7 6 5 9 9 H 1.08998 * 110.96857 * 267.29572 * 8 7 6 10 10 C 1.50696 * 110.97036 * 143.53023 * 8 7 6 11 11 H 1.08004 * 120.00032 * 0.02562 * 10 8 7 12 12 C 1.37879 * 120.00109 * 180.02562 * 10 8 7 13 13 N 1.31510 * 119.99771 * 0.02562 * 12 10 8 14 14 Si 1.86804 * 119.99938 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47080 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.46831 * 119.99975 * 14 12 10 17 17 H 1.48497 * 109.47135 * 239.99780 * 14 12 10 18 18 C 1.54631 * 101.76379 * 25.41563 * 8 7 6 19 19 C 1.34417 * 124.35563 * 270.02479 * 6 5 4 20 20 O 1.21283 * 124.93738 * 0.36639 * 19 6 5 21 21 H 1.09001 * 109.47313 * 296.04497 * 1 2 3 22 22 H 1.09003 * 109.47506 * 56.04751 * 1 2 3 23 23 H 1.08997 * 109.46580 * 176.04397 * 1 2 3 24 24 H 1.08997 * 109.47395 * 183.95345 * 3 2 1 25 25 H 1.09005 * 109.47451 * 303.95542 * 3 2 1 26 26 H 1.09003 * 109.46742 * 63.95341 * 3 2 1 27 27 H 1.08993 * 109.47661 * 50.00177 * 4 2 1 28 28 H 1.09007 * 109.46654 * 289.99911 * 4 2 1 29 29 H 1.09009 * 109.47228 * 59.99591 * 5 4 2 30 30 H 1.09002 * 109.47081 * 299.99917 * 5 4 2 31 31 H 1.09000 * 110.24445 * 282.00685 * 7 6 5 32 32 H 1.08996 * 110.24758 * 44.00415 * 7 6 5 33 33 H 0.97008 * 119.99667 * 179.97438 * 13 12 10 34 34 H 1.08997 * 110.48613 * 216.52254 * 18 8 7 35 35 H 1.09001 * 110.59766 * 93.93200 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5045 -0.9553 0.9703 6 7 4.0296 -1.7187 2.1050 7 6 4.1301 -3.1825 2.1428 8 6 5.1099 -3.4988 3.2944 9 1 6.1311 -3.5890 2.9240 10 6 4.6930 -4.7462 4.0300 11 1 3.8093 -5.2851 3.7216 12 6 5.4397 -5.1996 5.0967 13 7 6.5155 -4.5431 5.4726 14 14 4.9232 -6.7463 6.0081 15 1 3.6871 -7.2934 5.3935 16 1 6.0082 -7.7566 5.9227 17 1 4.6636 -6.4179 7.4328 18 6 4.9552 -2.2493 4.1921 19 6 4.4809 -1.1688 3.2455 20 8 4.5048 0.0207 3.4811 21 1 -0.3634 0.4512 0.9233 22 1 -0.3634 0.5740 -0.8524 23 1 -0.3632 -1.0252 -0.0709 24 1 3.0828 1.3433 -0.0708 25 1 1.5898 1.9164 -0.8524 26 1 1.7043 1.8723 0.9233 27 1 1.5091 -1.7407 1.1755 28 1 1.7975 -0.2247 2.0628 29 1 3.9910 0.0194 0.9322 30 1 3.7024 -1.4965 0.0450 31 1 3.1538 -3.6224 2.3466 32 1 4.5241 -3.5580 1.1985 33 1 7.0406 -4.8619 6.2233 34 1 5.9135 -1.9759 4.6338 35 1 4.2137 -2.4262 4.9712 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261294317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:14 Heat of formation + Delta-G solvation = -53.505834 kcal Electronic energy + Delta-G solvation = -15887.273644 eV Core-core repulsion = 13305.269817 eV Total energy + Delta-G solvation = -2582.003826 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.25986 -38.53119 -37.44155 -35.21502 -33.17760 -29.91960 -28.64669 -28.49837 -26.66501 -25.02231 -22.28329 -22.11273 -20.20209 -18.66538 -17.65121 -17.00312 -16.63155 -16.45978 -16.08943 -15.67261 -15.49181 -14.63122 -14.46615 -14.12483 -14.00684 -13.92500 -13.32383 -12.89519 -12.88037 -12.73505 -12.64185 -12.51648 -12.47204 -12.07044 -11.96127 -11.32326 -11.28032 -10.74742 -10.42129 -9.67191 -9.41991 -8.14511 -6.25429 1.46345 1.49823 1.59888 1.60545 2.06818 2.46156 3.08709 3.19026 3.70399 3.94832 4.04106 4.19803 4.28747 4.40973 4.46754 4.49173 4.59871 4.65950 4.69473 4.80106 4.86362 4.90953 4.97493 4.99037 5.02125 5.42249 5.59736 5.71327 5.83198 5.95204 6.00351 6.12191 6.28296 6.84318 7.23637 7.44593 8.95775 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.044225 B = 0.006005 C = 0.005571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.974698 B = 4661.486102 C = 5025.050086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.548 5.548 3 C 0.019 3.981 4 C 0.048 3.952 5 C 0.129 3.871 6 N -0.611 5.611 7 C 0.117 3.883 8 C 0.039 3.961 9 H 0.025 0.975 10 C -0.526 4.526 11 H 0.072 0.928 12 C 0.016 3.984 13 N -0.920 5.920 14 Si 0.958 3.042 15 H -0.260 1.260 16 H -0.283 1.283 17 H -0.287 1.287 18 C -0.124 4.124 19 C 0.511 3.489 20 O -0.592 6.592 21 H 0.020 0.980 22 H 0.087 0.913 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.090 0.910 26 H 0.016 0.984 27 H 0.084 0.916 28 H 0.013 0.987 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.262 0.738 34 H 0.065 0.935 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.662 4.590 -10.611 15.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.273 5.273 3 C -0.129 4.129 4 C -0.081 4.081 5 C 0.007 3.993 6 N -0.344 5.344 7 C -0.005 4.005 8 C 0.020 3.980 9 H 0.043 0.957 10 C -0.564 4.564 11 H 0.090 0.910 12 C -0.184 4.184 13 N -0.558 5.558 14 Si 0.784 3.216 15 H -0.184 1.184 16 H -0.209 1.209 17 H -0.213 1.213 18 C -0.165 4.165 19 C 0.301 3.699 20 O -0.474 6.474 21 H 0.039 0.961 22 H 0.106 0.894 23 H 0.094 0.906 24 H 0.085 0.915 25 H 0.108 0.892 26 H 0.034 0.966 27 H 0.102 0.898 28 H 0.031 0.969 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.395 4.988 -10.895 15.227 hybrid contribution -0.084 -0.194 1.749 1.762 sum -9.479 4.794 -9.146 14.017 Atomic orbital electron populations 1.22464 0.85807 1.03148 1.01005 1.61998 1.09259 1.14306 1.41695 1.22507 1.01110 0.88433 1.00853 1.22383 0.95729 0.98824 0.91188 1.21401 0.92969 0.96520 0.88429 1.48419 1.61270 1.08875 1.15793 1.22353 1.00606 0.77080 1.00414 1.19585 0.94793 0.92415 0.91191 0.95694 1.21368 1.11181 1.09377 1.14451 0.91023 1.25773 0.94717 0.99862 0.98060 1.70090 1.17028 1.40917 1.27811 0.85503 0.78564 0.79475 0.78100 1.18372 1.20885 1.21310 1.22250 1.01044 0.95187 0.98012 1.21603 0.75635 0.88673 0.83947 1.90562 1.59374 1.18059 1.79410 0.96144 0.89437 0.90577 0.91481 0.89169 0.96550 0.89756 0.96914 0.91392 0.87524 0.90771 0.89388 0.92891 0.91612 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.57 127.69 1.22 1.65 16 2 N -0.55 -12.50 5.02 -948.84 -4.76 -17.26 16 3 C 0.02 0.40 9.32 127.69 1.19 1.59 16 4 C 0.05 1.31 5.28 86.30 0.46 1.77 16 5 C 0.13 3.79 5.86 86.38 0.51 4.30 16 6 N -0.61 -22.36 2.93 -817.98 -2.40 -24.76 16 7 C 0.12 4.23 6.90 86.83 0.60 4.83 16 8 C 0.04 1.81 2.97 -10.48 -0.03 1.78 16 9 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 10 C -0.53 -26.17 8.39 25.60 0.21 -25.96 16 11 H 0.07 3.38 7.60 -2.91 -0.02 3.36 16 12 C 0.02 0.81 5.37 84.66 0.45 1.27 16 13 N -0.92 -51.20 12.84 21.45 0.28 -50.93 16 14 Si 0.96 41.00 29.54 68.60 2.03 43.03 16 15 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 16 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 18 C -0.12 -5.92 5.81 30.59 0.18 -5.74 16 19 C 0.51 22.78 8.02 87.90 0.71 23.48 16 20 O -0.59 -29.27 17.59 -3.04 -0.05 -29.33 16 21 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 22 H 0.09 1.25 8.12 -2.39 -0.02 1.23 16 23 H 0.08 1.27 8.12 -2.39 -0.02 1.26 16 24 H 0.07 1.48 6.47 -2.39 -0.02 1.47 16 25 H 0.09 1.47 8.12 -2.38 -0.02 1.45 16 26 H 0.02 0.37 8.14 -2.39 -0.02 0.36 16 27 H 0.08 2.18 8.06 -2.39 -0.02 2.16 16 28 H 0.01 0.41 8.12 -2.38 -0.02 0.39 16 29 H 0.07 2.13 6.34 -2.38 -0.02 2.12 16 30 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.07 2.55 7.74 -2.39 -0.02 2.53 16 32 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.26 13.96 8.31 -92.70 -0.77 13.19 16 34 H 0.07 3.41 8.14 -2.39 -0.02 3.39 16 35 H 0.08 3.90 7.89 -2.39 -0.02 3.89 16 Total: -1.00 -60.94 290.48 1.63 -59.31 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 1.05 Total: 10.96 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 5.49 Total: 8.97 kcal Atomic # 7 Polarization: -86.07 SS G_CDS: -6.88 Total: -92.95 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.05 Total: -29.33 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -60.94 1.63 -59.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261294317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.808 kcal (2) G-P(sol) polarization free energy of solvation -60.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds