Wall clock time and date at job start Mon Mar 30 2020 03:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.46766 * 2 1 4 4 C 1.53006 * 109.47315 * 119.99583 * 2 1 3 5 5 C 1.52999 * 109.46923 * 65.92997 * 4 2 1 6 6 C 1.52996 * 110.27444 * 52.33610 * 5 4 2 7 7 C 1.54944 * 110.30878 * 174.43590 * 5 4 2 8 8 C 1.55303 * 100.93878 * 155.35912 * 7 5 4 9 9 C 1.54376 * 102.25715 * 325.86207 * 8 7 5 10 10 C 1.52997 * 109.83284 * 140.87263 * 9 8 7 11 11 C 1.50697 * 109.83301 * 261.75896 * 9 8 7 12 12 H 1.08003 * 119.99800 * 359.80774 * 11 9 8 13 13 C 1.37879 * 120.00315 * 179.81205 * 11 9 8 14 14 N 1.31509 * 119.99629 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 120.00149 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47247 * 59.99919 * 15 13 11 17 17 H 1.48497 * 109.47018 * 180.02562 * 15 13 11 18 18 H 1.48509 * 109.47116 * 300.00154 * 15 13 11 19 19 O 1.43240 * 107.58518 * 21.35971 * 9 8 7 20 20 H 1.09007 * 109.46521 * 172.74834 * 1 2 3 21 21 H 1.09001 * 109.47215 * 292.74377 * 1 2 3 22 22 H 1.08994 * 109.47149 * 52.75565 * 1 2 3 23 23 H 1.08997 * 109.47615 * 240.00405 * 2 1 3 24 24 H 1.09001 * 109.46804 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.47050 * 299.99804 * 3 2 1 26 26 H 1.08997 * 109.46722 * 59.99858 * 3 2 1 27 27 H 1.09001 * 109.46853 * 305.93070 * 4 2 1 28 28 H 1.09000 * 109.47044 * 185.93160 * 4 2 1 29 29 H 1.08999 * 109.46897 * 181.39148 * 6 5 4 30 30 H 1.08993 * 109.47642 * 301.39143 * 6 5 4 31 31 H 1.09000 * 109.46602 * 61.39476 * 6 5 4 32 32 H 1.08997 * 111.12714 * 37.43346 * 7 5 4 33 33 H 1.09006 * 111.12025 * 273.27301 * 7 5 4 34 34 H 1.09009 * 110.84544 * 207.67168 * 8 7 5 35 35 H 1.09002 * 111.02503 * 84.13522 * 8 7 5 36 36 H 1.09004 * 109.46981 * 60.00149 * 10 9 8 37 37 H 1.09004 * 109.46931 * 300.00265 * 10 9 8 38 38 H 1.09001 * 109.47217 * 180.02562 * 10 9 8 39 39 H 0.97010 * 119.99710 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6554 -2.2003 1.1771 6 6 2.1120 -2.8025 -0.1531 7 6 2.2814 -2.9772 2.3625 8 6 1.3042 -4.1790 2.4761 9 6 -0.0465 -3.5411 2.0863 10 6 -0.8538 -4.5180 1.2291 11 6 -0.8231 -3.1891 3.3288 12 1 -0.4066 -3.3979 4.3032 13 6 -2.0654 -2.6006 3.2218 14 7 -2.5723 -2.3461 2.0353 15 14 -3.0284 -2.1650 4.7621 16 1 -2.2456 -1.2042 5.5801 17 1 -4.3237 -1.5486 4.3782 18 1 -3.2817 -3.3965 5.5524 19 8 0.2360 -2.3545 1.3353 20 1 -0.3632 -1.0195 -0.1297 21 1 -0.3634 0.3973 0.9478 22 1 -0.3633 0.6219 -0.8180 23 1 1.8934 -0.5137 -0.8900 24 1 3.1299 1.4426 0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6765 1.9564 0.8900 27 1 1.5926 -0.2722 2.1361 28 1 3.1249 -0.6301 1.3040 29 1 1.8100 -3.8487 -0.2010 30 1 1.6544 -2.2542 -0.9764 31 1 3.1972 -2.7337 -0.2295 32 1 2.2743 -2.3777 3.2728 33 1 3.2905 -3.3127 2.1231 34 1 1.2735 -4.5588 3.4974 35 1 1.5753 -4.9707 1.7776 36 1 -1.0369 -5.4318 1.7945 37 1 -0.2937 -4.7563 0.3248 38 1 -1.8056 -4.0618 0.9570 39 1 -3.4462 -1.9317 1.9600 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306207419.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:11 Heat of formation + Delta-G solvation = -82.973185 kcal Electronic energy + Delta-G solvation = -17459.313268 eV Core-core repulsion = 14979.571985 eV Total energy + Delta-G solvation = -2479.741283 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.62238 -37.16472 -34.78596 -32.75595 -32.35352 -29.34786 -27.83809 -27.61982 -27.06920 -24.29344 -21.40099 -21.23219 -19.91713 -18.57875 -16.75068 -16.39658 -16.11219 -15.37851 -15.02527 -14.56328 -14.46121 -14.10747 -13.98096 -13.22712 -13.20038 -13.09300 -12.94364 -12.80067 -12.70897 -12.54960 -12.36275 -12.22457 -12.12376 -11.94253 -11.76406 -11.47121 -11.35193 -11.00059 -10.79003 -10.67320 -10.44807 -9.55566 -7.94256 -6.15224 1.40858 1.41755 1.48260 2.46326 3.17964 3.62316 3.93500 4.01518 4.22996 4.27896 4.29772 4.53991 4.59038 4.68129 4.79710 4.86665 4.90828 4.94340 4.97124 4.99722 5.10881 5.12850 5.16326 5.21170 5.22285 5.28412 5.31522 5.43535 5.51955 5.58940 5.59751 5.72823 5.80610 5.93116 6.20068 6.46073 6.78782 7.33048 7.60151 9.04723 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024991 B = 0.011242 C = 0.009307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.126928 B = 2489.975378 C = 3007.892293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.089 4.089 3 C -0.140 4.140 4 C -0.096 4.096 5 C 0.085 3.915 6 C -0.152 4.152 7 C -0.132 4.132 8 C -0.138 4.138 9 C 0.216 3.784 10 C -0.133 4.133 11 C -0.547 4.547 12 H 0.046 0.954 13 C 0.039 3.961 14 N -0.881 5.881 15 Si 0.937 3.063 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.272 1.272 19 O -0.356 6.356 20 H 0.053 0.947 21 H 0.021 0.979 22 H 0.044 0.956 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.042 0.958 27 H 0.039 0.961 28 H 0.086 0.914 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.032 0.968 37 H 0.025 0.975 38 H 0.059 0.941 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.107 2.300 -3.825 11.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.108 4.108 3 C -0.197 4.197 4 C -0.134 4.134 5 C 0.045 3.955 6 C -0.209 4.209 7 C -0.170 4.170 8 C -0.176 4.176 9 C 0.178 3.822 10 C -0.191 4.191 11 C -0.585 4.585 12 H 0.064 0.936 13 C -0.164 4.164 14 N -0.518 5.518 15 Si 0.763 3.237 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.198 1.198 19 O -0.276 6.276 20 H 0.072 0.928 21 H 0.040 0.960 22 H 0.063 0.937 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.044 0.956 38 H 0.077 0.923 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.785 2.507 -4.000 10.864 hybrid contribution -0.981 -0.010 1.133 1.499 sum 8.804 2.497 -2.867 9.589 Atomic orbital electron populations 1.21675 0.96136 1.01736 0.98958 1.21125 0.95045 0.96497 0.98090 1.21813 1.01301 0.95215 1.01406 1.21678 1.00407 0.93554 0.97738 1.22386 0.84195 0.94852 0.94041 1.22204 1.01425 1.00179 0.97115 1.23120 0.98953 0.96551 0.98337 1.23092 0.96103 0.97714 1.00701 1.19594 0.90675 0.83086 0.88842 1.21912 1.02187 0.97693 0.97282 1.21543 1.02395 1.42124 0.92437 0.93607 1.25573 0.98172 0.94916 0.97710 1.70079 1.17010 1.41468 1.23228 0.85977 0.78074 0.78454 0.81146 1.20370 1.21156 1.19758 1.88774 1.19254 1.45094 1.74499 0.92762 0.96012 0.93744 0.90359 0.91300 0.92222 0.93860 0.94234 0.89601 0.93805 0.92372 0.90253 0.92486 0.89128 0.92402 0.91710 0.94856 0.95560 0.92262 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 8.36 71.98 0.60 -4.39 16 2 C -0.09 -2.79 2.55 -10.79 -0.03 -2.82 16 3 C -0.14 -3.53 9.19 71.99 0.66 -2.87 16 4 C -0.10 -3.23 4.15 30.60 0.13 -3.10 16 5 C 0.09 3.19 0.79 -10.13 -0.01 3.19 16 6 C -0.15 -4.82 8.33 71.98 0.60 -4.22 16 7 C -0.13 -4.72 6.05 32.05 0.19 -4.53 16 8 C -0.14 -5.65 5.69 31.85 0.18 -5.47 16 9 C 0.22 10.69 0.82 -11.07 -0.01 10.68 16 10 C -0.13 -6.57 8.52 71.98 0.61 -5.96 16 11 C -0.55 -30.40 8.23 25.60 0.21 -30.19 16 12 H 0.05 2.54 7.48 -2.91 -0.02 2.52 16 13 C 0.04 2.17 5.26 84.66 0.45 2.62 16 14 N -0.88 -51.17 10.92 21.45 0.23 -50.94 16 15 Si 0.94 44.51 29.54 68.60 2.03 46.54 16 16 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 17 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 18 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 19 O -0.36 -17.28 6.68 -148.98 -1.00 -18.28 16 20 H 0.05 2.50 6.03 -2.38 -0.01 2.49 16 21 H 0.02 0.93 8.13 -2.39 -0.02 0.91 16 22 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 23 H 0.08 2.26 6.00 -2.39 -0.01 2.25 16 24 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 26 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.04 1.53 8.13 -2.39 -0.02 1.51 16 28 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.04 1.46 7.34 -2.39 -0.02 1.44 16 30 H 0.06 1.85 6.19 -2.39 -0.01 1.84 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.06 2.15 8.06 -2.39 -0.02 2.13 16 33 H 0.09 2.58 8.03 -2.38 -0.02 2.56 16 34 H 0.06 2.38 7.60 -2.38 -0.02 2.37 16 35 H 0.06 2.40 7.53 -2.39 -0.02 2.38 16 36 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.03 1.15 7.96 -2.38 -0.02 1.13 16 38 H 0.06 3.28 6.03 -2.39 -0.01 3.27 16 39 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 Total: -1.00 -60.96 296.20 5.84 -55.12 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.98 Total: 14.61 kcal Atomic # 6 Polarization: -50.65 SS G_CDS: 3.59 Total: -47.06 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.23 Total: -50.94 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -1.00 Total: -18.28 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -60.96 5.84 -55.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306207419.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.853 kcal (2) G-P(sol) polarization free energy of solvation -60.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds