Wall clock time and date at job start Mon Mar 30 2020 03:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34776 * 120.00277 * 2 1 4 4 O 1.21286 * 119.99875 * 355.32731 * 3 2 1 5 5 C 1.50693 * 120.00063 * 175.32301 * 3 2 1 6 6 N 1.46497 * 109.46982 * 35.77551 * 5 3 2 7 7 C 1.36939 * 120.00522 * 57.22056 * 6 5 3 8 8 H 1.07992 * 119.99688 * 5.14594 * 7 6 5 9 9 C 1.38816 * 120.00276 * 185.14492 * 7 6 5 10 10 N 1.31621 * 119.99898 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 119.99888 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47361 * 60.00114 * 11 9 7 13 13 H 1.48505 * 109.47019 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47076 * 299.99673 * 11 9 7 15 15 C 1.53005 * 109.47122 * 155.76822 * 5 3 2 16 16 C 1.53000 * 109.47005 * 180.02562 * 15 5 3 17 17 C 1.52994 * 109.47126 * 300.00041 * 16 15 5 18 18 C 1.52999 * 109.47116 * 60.00589 * 17 16 15 19 19 C 1.52990 * 109.47642 * 275.77044 * 5 3 2 20 20 H 1.09004 * 109.47199 * 59.99419 * 1 2 3 21 21 H 1.08990 * 109.47440 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46679 * 299.99896 * 1 2 3 23 23 H 0.97005 * 119.99706 * 180.02562 * 2 1 3 24 24 H 0.97006 * 119.99913 * 237.49779 * 6 5 3 25 25 H 0.96993 * 119.99869 * 179.97438 * 10 9 7 26 26 H 1.08996 * 109.47224 * 300.00573 * 15 5 3 27 27 H 1.09005 * 109.46715 * 59.99954 * 15 5 3 28 28 H 1.09002 * 109.46747 * 179.97438 * 16 15 5 29 29 H 1.08994 * 109.47207 * 60.00769 * 16 15 5 30 30 H 1.08994 * 109.47636 * 299.99887 * 17 16 15 31 31 H 1.09010 * 109.47060 * 180.02562 * 17 16 15 32 32 H 1.09000 * 109.46898 * 179.97438 * 18 17 16 33 33 H 1.08995 * 109.47672 * 59.99679 * 18 17 16 34 34 H 1.09004 * 109.47371 * 300.00408 * 19 5 3 35 35 H 1.09002 * 109.47183 * 59.99961 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5356 2.2158 -0.0856 5 6 3.6421 1.1693 0.1064 6 7 4.1846 0.0174 -0.6182 7 6 3.9009 -0.1511 -1.9472 8 1 3.3473 0.6068 -2.4815 9 6 4.3248 -1.2960 -2.6078 10 7 4.9999 -2.2195 -1.9568 11 14 3.9384 -1.5254 -4.4209 12 1 4.5446 -0.4163 -5.2004 13 1 4.4975 -2.8201 -4.8862 14 1 2.4665 -1.5220 -4.6176 15 6 4.1946 2.4602 -0.5013 16 6 5.7209 2.4620 -0.3938 17 6 6.1285 2.3761 1.0783 18 6 5.5762 1.0851 1.6859 19 6 4.0494 1.0836 1.5786 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0275 -0.0005 22 1 -0.3632 0.5138 0.8900 23 1 1.9500 -0.8401 -0.0004 24 1 4.7415 -0.6282 -0.1556 25 1 5.2958 -3.0197 -2.4183 26 1 3.9045 2.5213 -1.5502 27 1 3.7910 3.3173 0.0378 28 1 6.1144 3.3815 -0.8272 29 1 6.1241 1.6051 -0.9332 30 1 5.7254 3.2331 1.6177 31 1 7.2159 2.3778 1.1549 32 1 5.8670 1.0237 2.7346 33 1 5.9794 0.2281 1.1466 34 1 3.6458 1.9407 2.1178 35 1 3.6559 0.1639 2.0116 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306264353.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:10 Heat of formation + Delta-G solvation = -43.730397 kcal Electronic energy + Delta-G solvation = -16913.123920 eV Core-core repulsion = 14331.543988 eV Total energy + Delta-G solvation = -2581.579931 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.64176 -37.16719 -34.05101 -33.42200 -31.24959 -30.21529 -28.26004 -26.28657 -23.77780 -22.34017 -21.97635 -19.72067 -18.34698 -17.36924 -16.43461 -15.46240 -14.81229 -14.38252 -14.16466 -13.91123 -13.56272 -13.33776 -12.79315 -12.29950 -12.07555 -11.79985 -11.72437 -11.60360 -11.50150 -10.92475 -10.82780 -10.55755 -10.23195 -10.06771 -10.06213 -9.67510 -9.62584 -9.18228 -8.71253 -8.34183 -7.07286 -5.87606 -3.18216 3.39052 3.43889 3.45332 3.48802 4.08057 4.51904 5.25843 5.28903 5.33033 5.51169 5.58690 5.66803 5.80338 5.91614 5.92543 5.98786 6.10718 6.12821 6.15256 6.17720 6.29235 6.44065 6.64659 6.74484 6.77180 6.82485 7.03766 7.18977 7.22843 7.66694 8.28813 8.34718 9.07143 9.43407 9.93569 10.31831 11.33610 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.020440 B = 0.012842 C = 0.009530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.565904 B = 2179.804600 C = 2937.423682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.720 5.720 3 C 0.515 3.485 4 O -0.574 6.574 5 C 0.188 3.812 6 N -0.709 5.709 7 C -0.239 4.239 8 H 0.068 0.932 9 C -0.004 4.004 10 N -0.929 5.929 11 Si 0.903 3.097 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.286 1.286 15 C -0.103 4.103 16 C -0.111 4.111 17 C -0.114 4.114 18 C -0.113 4.113 19 C -0.110 4.110 20 H 0.051 0.949 21 H 0.066 0.934 22 H 0.048 0.952 23 H 0.413 0.587 24 H 0.389 0.611 25 H 0.257 0.743 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.482 3.863 6.733 7.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.371 5.371 3 C 0.301 3.699 4 O -0.453 6.453 5 C 0.093 3.907 6 N -0.353 5.353 7 C -0.370 4.370 8 H 0.086 0.914 9 C -0.200 4.200 10 N -0.576 5.576 11 Si 0.734 3.266 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.213 1.213 15 C -0.143 4.143 16 C -0.149 4.149 17 C -0.152 4.152 18 C -0.151 4.151 19 C -0.148 4.148 20 H 0.070 0.930 21 H 0.085 0.915 22 H 0.067 0.933 23 H 0.249 0.751 24 H 0.224 0.776 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.983 4.564 6.515 8.198 hybrid contribution 0.052 -0.857 -1.064 1.367 sum -1.931 3.707 5.450 6.869 Atomic orbital electron populations 1.21391 0.81753 1.01198 1.01134 1.45740 1.06224 1.10263 1.74917 1.21935 0.91675 0.82763 0.73547 1.90561 1.71238 1.32237 1.51248 1.19778 0.87654 0.90918 0.92352 1.42495 1.59576 1.25066 1.08145 1.19075 1.29970 1.01960 0.86026 0.91391 1.24682 1.00712 0.96674 0.97957 1.69641 1.42319 1.10004 1.35642 0.86333 0.77901 0.76952 0.85400 1.21208 1.21722 1.21289 1.21642 0.95079 0.96375 1.01241 1.21422 0.96051 1.01718 0.95701 1.21496 0.99460 0.97333 0.96897 1.21466 0.94863 0.98999 0.99760 1.21614 0.96753 1.01632 0.94788 0.93034 0.91505 0.93327 0.75072 0.77556 0.93350 0.92001 0.92719 0.93420 0.90144 0.92952 0.92794 0.92779 0.90698 0.91816 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.43 10.71 59.85 0.64 2.07 16 2 N -0.72 -13.71 5.44 -67.08 -0.36 -14.08 16 3 C 0.52 10.91 6.06 -10.99 -0.07 10.84 16 4 O -0.57 -13.48 16.09 5.55 0.09 -13.39 16 5 C 0.19 3.73 0.68 -132.98 -0.09 3.64 16 6 N -0.71 -15.84 3.36 -48.31 -0.16 -16.00 16 7 C -0.24 -6.10 8.48 -15.06 -0.13 -6.23 16 8 H 0.07 1.82 7.23 -52.49 -0.38 1.44 16 9 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 10 N -0.93 -25.72 13.06 55.49 0.72 -24.99 16 11 Si 0.90 21.66 29.55 -169.99 -5.02 16.64 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 C -0.10 -2.04 4.12 -26.73 -0.11 -2.15 16 16 C -0.11 -1.96 5.76 -26.73 -0.15 -2.12 16 17 C -0.11 -1.72 5.92 -26.73 -0.16 -1.88 16 18 C -0.11 -1.74 5.75 -26.71 -0.15 -1.90 16 19 C -0.11 -1.83 4.77 -26.71 -0.13 -1.96 16 20 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 21 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.41 7.97 8.04 -40.82 -0.33 7.65 16 24 H 0.39 9.10 6.44 -40.82 -0.26 8.84 16 25 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.06 1.36 7.33 -51.93 -0.38 0.98 16 27 H 0.05 1.05 7.87 -51.93 -0.41 0.64 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.08 1.63 7.60 -51.93 -0.39 1.23 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.29 6.81 -51.93 -0.35 0.93 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 279.51 15.07 4.21 4.21 Total: -1.00 -28.65 279.51 -6.42 -35.06 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -5.45 Total: 12.42 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -0.44 Total: 0.12 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.20 Total: -55.07 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.09 Total: -13.39 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.65 -6.42 -35.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306264353.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.667 kcal (2) G-P(sol) polarization free energy of solvation -28.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds