Wall clock time and date at job start Mon Mar 30 2020 03:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34776 * 120.00277 * 2 1 4 4 O 1.21286 * 119.99875 * 355.32731 * 3 2 1 5 5 C 1.50693 * 120.00063 * 175.32301 * 3 2 1 6 6 N 1.46497 * 109.46982 * 35.77551 * 5 3 2 7 7 C 1.36939 * 120.00522 * 57.22056 * 6 5 3 8 8 H 1.07992 * 119.99688 * 5.14594 * 7 6 5 9 9 C 1.38816 * 120.00276 * 185.14492 * 7 6 5 10 10 N 1.31621 * 119.99898 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 119.99888 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47361 * 60.00114 * 11 9 7 13 13 H 1.48505 * 109.47019 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47076 * 299.99673 * 11 9 7 15 15 C 1.53005 * 109.47122 * 155.76822 * 5 3 2 16 16 C 1.53000 * 109.47005 * 180.02562 * 15 5 3 17 17 C 1.52994 * 109.47126 * 300.00041 * 16 15 5 18 18 C 1.52999 * 109.47116 * 60.00589 * 17 16 15 19 19 C 1.52990 * 109.47642 * 275.77044 * 5 3 2 20 20 H 1.09004 * 109.47199 * 59.99419 * 1 2 3 21 21 H 1.08990 * 109.47440 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46679 * 299.99896 * 1 2 3 23 23 H 0.97005 * 119.99706 * 180.02562 * 2 1 3 24 24 H 0.97006 * 119.99913 * 237.49779 * 6 5 3 25 25 H 0.96993 * 119.99869 * 179.97438 * 10 9 7 26 26 H 1.08996 * 109.47224 * 300.00573 * 15 5 3 27 27 H 1.09005 * 109.46715 * 59.99954 * 15 5 3 28 28 H 1.09002 * 109.46747 * 179.97438 * 16 15 5 29 29 H 1.08994 * 109.47207 * 60.00769 * 16 15 5 30 30 H 1.08994 * 109.47636 * 299.99887 * 17 16 15 31 31 H 1.09010 * 109.47060 * 180.02562 * 17 16 15 32 32 H 1.09000 * 109.46898 * 179.97438 * 18 17 16 33 33 H 1.08995 * 109.47672 * 59.99679 * 18 17 16 34 34 H 1.09004 * 109.47371 * 300.00408 * 19 5 3 35 35 H 1.09002 * 109.47183 * 59.99961 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5356 2.2158 -0.0856 5 6 3.6421 1.1693 0.1064 6 7 4.1846 0.0174 -0.6182 7 6 3.9009 -0.1511 -1.9472 8 1 3.3473 0.6068 -2.4815 9 6 4.3248 -1.2960 -2.6078 10 7 4.9999 -2.2195 -1.9568 11 14 3.9384 -1.5254 -4.4209 12 1 4.5446 -0.4163 -5.2004 13 1 4.4975 -2.8201 -4.8862 14 1 2.4665 -1.5220 -4.6176 15 6 4.1946 2.4602 -0.5013 16 6 5.7209 2.4620 -0.3938 17 6 6.1285 2.3761 1.0783 18 6 5.5762 1.0851 1.6859 19 6 4.0494 1.0836 1.5786 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0275 -0.0005 22 1 -0.3632 0.5138 0.8900 23 1 1.9500 -0.8401 -0.0004 24 1 4.7415 -0.6282 -0.1556 25 1 5.2958 -3.0197 -2.4183 26 1 3.9045 2.5213 -1.5502 27 1 3.7910 3.3173 0.0378 28 1 6.1144 3.3815 -0.8272 29 1 6.1241 1.6051 -0.9332 30 1 5.7254 3.2331 1.6177 31 1 7.2159 2.3778 1.1549 32 1 5.8670 1.0237 2.7346 33 1 5.9794 0.2281 1.1466 34 1 3.6458 1.9407 2.1178 35 1 3.6559 0.1639 2.0116 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306264353.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:10 Heat of formation + Delta-G solvation = -62.654479 kcal Electronic energy + Delta-G solvation = -16913.944529 eV Core-core repulsion = 14331.543988 eV Total energy + Delta-G solvation = -2582.400541 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.24550 -38.70424 -35.75943 -35.09919 -32.99540 -31.63380 -29.98650 -27.67881 -25.71233 -23.80484 -23.39790 -21.21785 -19.90288 -19.23231 -18.12068 -17.05408 -16.49970 -16.04017 -15.74929 -15.49713 -15.10021 -14.90005 -14.35116 -13.81358 -13.55745 -13.39983 -13.13158 -13.01994 -12.97397 -12.79916 -12.61961 -12.18475 -11.98641 -11.81346 -11.53567 -11.27949 -11.19057 -10.81328 -10.46274 -9.90985 -8.98406 -7.93228 -5.21400 1.46125 1.48180 1.53094 1.81075 2.52210 2.61056 3.40353 3.81227 3.92343 3.95609 4.07331 4.34463 4.45966 4.52604 4.60887 4.63395 4.70312 4.72412 4.81313 4.88454 4.95425 5.13771 5.18926 5.38602 5.43388 5.44892 5.50884 5.55243 5.69413 5.75012 6.27304 6.72629 7.38063 7.43217 8.03606 8.35533 9.27667 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.020440 B = 0.012842 C = 0.009530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.565904 B = 2179.804600 C = 2937.423682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.718 5.718 3 C 0.507 3.493 4 O -0.602 6.602 5 C 0.183 3.817 6 N -0.705 5.705 7 C -0.225 4.225 8 H 0.052 0.948 9 C -0.048 4.048 10 N -0.952 5.952 11 Si 0.951 3.049 12 H -0.288 1.288 13 H -0.293 1.293 14 H -0.286 1.286 15 C -0.100 4.100 16 C -0.107 4.107 17 C -0.110 4.110 18 C -0.109 4.109 19 C -0.105 4.105 20 H 0.039 0.961 21 H 0.099 0.901 22 H 0.059 0.941 23 H 0.412 0.588 24 H 0.385 0.615 25 H 0.252 0.748 26 H 0.028 0.972 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.443 4.179 7.933 9.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.368 5.368 3 C 0.293 3.707 4 O -0.483 6.483 5 C 0.089 3.911 6 N -0.348 5.348 7 C -0.357 4.357 8 H 0.070 0.930 9 C -0.242 4.242 10 N -0.601 5.601 11 Si 0.782 3.218 12 H -0.215 1.215 13 H -0.219 1.219 14 H -0.212 1.212 15 C -0.140 4.140 16 C -0.144 4.144 17 C -0.147 4.147 18 C -0.147 4.147 19 C -0.143 4.143 20 H 0.058 0.942 21 H 0.118 0.882 22 H 0.078 0.922 23 H 0.248 0.752 24 H 0.220 0.780 25 H 0.061 0.939 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.966 4.884 7.724 9.348 hybrid contribution -0.018 -0.900 -1.424 1.684 sum -1.984 3.985 6.301 7.714 Atomic orbital electron populations 1.21605 0.79735 1.03418 1.01054 1.45810 1.07724 1.09507 1.73721 1.22111 0.92237 0.82944 0.73420 1.90542 1.71801 1.33145 1.52850 1.19971 0.86972 0.89826 0.94342 1.42425 1.59445 1.25746 1.07166 1.19047 1.28445 1.00953 0.87269 0.92980 1.25158 1.01565 0.96923 1.00602 1.69736 1.43693 1.10277 1.36431 0.85570 0.77500 0.76424 0.82331 1.21501 1.21900 1.21218 1.21605 0.96714 0.96563 0.99165 1.21361 0.94237 1.01050 0.97778 1.21485 1.00720 0.97828 0.94679 1.21451 0.93548 0.98292 1.01401 1.21620 0.97953 1.02538 0.92191 0.94220 0.88215 0.92236 0.75227 0.78002 0.93880 0.95303 0.92077 0.91993 0.93235 0.91148 0.90975 0.89660 0.92836 0.90540 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.58 10.71 127.77 1.37 3.95 16 2 N -0.72 -26.68 5.44 -484.52 -2.64 -29.32 16 3 C 0.51 21.20 6.06 87.65 0.53 21.73 16 4 O -0.60 -28.09 16.09 -3.05 -0.05 -28.14 16 5 C 0.18 7.14 0.68 2.85 0.00 7.15 16 6 N -0.70 -31.50 3.36 -306.77 -1.03 -32.53 16 7 C -0.23 -11.57 8.48 84.03 0.71 -10.86 16 8 H 0.05 2.83 7.23 -2.91 -0.02 2.81 16 9 C -0.05 -2.58 5.50 84.86 0.47 -2.11 16 10 N -0.95 -52.88 13.06 21.65 0.28 -52.59 16 11 Si 0.95 44.71 29.55 68.60 2.03 46.74 16 12 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 13 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 14 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 15 C -0.10 -3.93 4.12 30.60 0.13 -3.80 16 16 C -0.11 -3.65 5.76 30.59 0.18 -3.47 16 17 C -0.11 -3.00 5.92 30.59 0.18 -2.82 16 18 C -0.11 -3.08 5.75 30.61 0.18 -2.91 16 19 C -0.10 -3.28 4.77 30.61 0.15 -3.14 16 20 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 21 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 22 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.41 15.54 8.04 -92.70 -0.75 14.80 16 24 H 0.38 18.00 6.44 -92.70 -0.60 17.41 16 25 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 26 H 0.03 1.28 7.33 -2.39 -0.02 1.26 16 27 H 0.06 2.29 7.87 -2.38 -0.02 2.27 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.05 2.00 7.60 -2.39 -0.02 1.98 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.05 1.76 6.81 -2.39 -0.02 1.74 16 34 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -60.80 279.51 2.22 -58.58 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: -0.26 Total: 33.54 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 3.89 Total: 3.72 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -3.39 Total: -114.45 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.05 Total: -28.14 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -60.80 2.22 -58.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306264353.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.073 kcal (2) G-P(sol) polarization free energy of solvation -60.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds