Wall clock time and date at job start Mon Mar 30 2020 03:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47019 * 2 1 4 4 C 1.52996 * 109.47238 * 120.00103 * 2 1 3 5 5 C 1.52998 * 109.47238 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47216 * 180.02562 * 5 4 2 7 7 C 1.52992 * 109.47467 * 59.99935 * 6 5 4 8 8 C 1.53004 * 109.47319 * 59.99942 * 7 6 5 9 9 H 1.08998 * 109.47285 * 300.00244 * 8 7 6 10 10 O 1.42896 * 109.46914 * 60.00351 * 8 7 6 11 11 C 1.50700 * 109.47208 * 180.02562 * 8 7 6 12 12 H 1.08002 * 119.99770 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00083 * 180.02562 * 11 8 7 14 14 N 1.31514 * 120.00147 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 120.00278 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.46986 * 270.00126 * 15 13 11 17 17 H 1.48496 * 109.47029 * 30.00143 * 15 13 11 18 18 H 1.48499 * 109.47352 * 149.99973 * 15 13 11 19 19 C 1.53004 * 109.47082 * 299.99930 * 7 6 5 20 20 C 1.52996 * 109.46934 * 60.00126 * 19 7 6 21 21 H 1.08998 * 109.47126 * 59.99381 * 1 2 3 22 22 H 1.08996 * 109.47462 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47239 * 299.99813 * 1 2 3 24 24 H 1.09004 * 109.46783 * 240.00465 * 2 1 3 25 25 H 1.08994 * 109.46778 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47208 * 300.00031 * 3 2 1 27 27 H 1.08997 * 109.46627 * 60.00580 * 3 2 1 28 28 H 1.08997 * 109.47701 * 300.00211 * 4 2 1 29 29 H 1.08996 * 109.47009 * 59.99776 * 5 4 2 30 30 H 1.09004 * 109.47239 * 300.00084 * 5 4 2 31 31 H 1.08998 * 109.47017 * 299.99328 * 6 5 4 32 32 H 1.09009 * 109.47102 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.47610 * 180.02562 * 7 6 5 34 34 H 0.96699 * 114.00348 * 60.00046 * 10 8 7 35 35 H 0.97005 * 119.99661 * 359.97438 * 14 13 11 36 36 H 1.09005 * 109.46997 * 179.97438 * 19 7 6 37 37 H 1.08998 * 109.47212 * 300.00489 * 19 7 6 38 38 H 1.09002 * 109.47587 * 180.02562 * 20 19 7 39 39 H 1.09004 * 109.47529 * 60.00064 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2489 6 6 4.0800 -1.4436 2.4977 7 6 3.5695 -2.8859 2.4975 8 6 4.0790 -3.6070 1.2479 9 1 3.7156 -3.0928 0.3581 10 8 5.5079 -3.6076 1.2476 11 6 3.5756 -5.0275 1.2474 12 1 2.9541 -5.3804 2.0571 13 6 3.9085 -5.8764 0.2132 14 7 4.6656 -5.4467 -0.7725 15 14 3.2840 -7.6370 0.2121 16 1 4.2608 -8.5091 0.9125 17 1 1.9753 -7.6984 0.9113 18 1 3.1194 -8.1030 -1.1882 19 6 2.0395 -2.8853 2.4979 20 6 1.5295 -2.1636 1.2490 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 -0.2075 2.1392 29 1 3.9337 0.3057 1.2486 30 1 3.9330 -1.2359 0.3588 31 1 3.7171 -0.9299 3.3879 32 1 5.1701 -1.4436 2.4977 33 1 3.9325 -3.4000 3.3874 34 1 5.9013 -4.0496 2.0124 35 1 4.9896 -4.5324 -0.7721 36 1 1.6758 -3.9129 2.4972 37 1 1.6766 -2.3716 3.3880 38 1 0.4395 -2.1628 1.2494 39 1 1.8924 -2.6773 0.3587 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306461057.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:51 Heat of formation + Delta-G solvation = -118.809734 kcal Electronic energy + Delta-G solvation = -17047.929651 eV Core-core repulsion = 14566.634379 eV Total energy + Delta-G solvation = -2481.295272 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.69186 -37.82193 -35.42273 -34.25341 -31.78515 -30.68347 -28.05849 -27.71288 -24.82436 -23.46021 -23.17743 -20.71285 -19.95543 -19.21241 -17.04329 -16.68625 -15.87061 -15.59539 -15.35476 -15.03662 -14.77755 -14.38301 -14.32775 -13.87155 -13.56045 -13.19718 -13.01032 -12.94679 -12.63497 -12.45874 -12.22740 -11.99769 -11.96492 -11.90192 -11.82080 -11.73111 -11.39957 -10.82969 -10.69737 -10.63823 -10.41885 -9.89593 -8.54228 -6.36386 1.50594 1.58997 1.75958 2.57114 3.22124 3.71751 3.79698 3.92127 4.08662 4.14186 4.27673 4.38555 4.48656 4.51728 4.63776 4.73649 4.74445 4.77803 4.79573 4.87391 5.00811 5.03507 5.09470 5.12568 5.14704 5.23678 5.32679 5.35722 5.41479 5.49441 5.53328 5.62235 5.68931 5.80383 6.01677 6.23871 6.64947 7.24253 7.58267 8.82445 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.030660 B = 0.008348 C = 0.007709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.010987 B = 3353.247124 C = 3631.350335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 C -0.142 4.142 4 C -0.069 4.069 5 C -0.110 4.110 6 C -0.103 4.103 7 C -0.102 4.102 8 C 0.217 3.783 9 H 0.030 0.970 10 O -0.598 6.598 11 C -0.643 4.643 12 H 0.048 0.952 13 C -0.022 4.022 14 N -0.927 5.927 15 Si 1.111 2.889 16 H -0.275 1.275 17 H -0.271 1.271 18 H -0.287 1.287 19 C -0.097 4.097 20 C -0.109 4.109 21 H 0.060 0.940 22 H 0.048 0.952 23 H 0.066 0.934 24 H 0.043 0.957 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.029 0.971 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.359 0.641 35 H 0.266 0.734 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.242 10.921 5.641 14.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.200 4.200 4 C -0.088 4.088 5 C -0.147 4.147 6 C -0.141 4.141 7 C -0.121 4.121 8 C 0.161 3.839 9 H 0.048 0.952 10 O -0.403 6.403 11 C -0.681 4.681 12 H 0.066 0.934 13 C -0.223 4.223 14 N -0.564 5.564 15 Si 0.934 3.066 16 H -0.201 1.201 17 H -0.196 1.196 18 H -0.213 1.213 19 C -0.134 4.134 20 C -0.146 4.146 21 H 0.079 0.921 22 H 0.067 0.933 23 H 0.085 0.915 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.204 0.796 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.324 9.871 4.230 12.999 hybrid contribution 0.410 0.727 1.032 1.327 sum -6.914 10.597 5.262 13.704 Atomic orbital electron populations 1.21846 0.94258 1.01654 1.02302 1.21148 0.96621 0.96660 0.97028 1.21841 1.00890 0.94906 1.02315 1.21127 0.94403 0.94818 0.98430 1.21582 0.95952 0.99821 0.97384 1.21440 0.99686 0.94726 0.98211 1.21592 0.96548 0.95888 0.98089 1.19577 0.77373 0.93525 0.93464 0.95229 1.86422 1.23730 1.80558 1.49570 1.22898 1.35771 0.99220 1.10162 0.93352 1.27163 0.94241 1.08767 0.92145 1.70751 1.32698 1.19708 1.33271 0.83029 0.76419 0.70952 0.76241 1.20058 1.19603 1.21265 1.21343 0.94391 0.99773 0.97920 1.21552 1.00014 0.95530 0.97522 0.92141 0.93253 0.91530 0.93845 0.93031 0.92162 0.91539 0.89979 0.90702 0.95195 0.90899 0.93212 0.93215 0.79561 0.92399 0.93550 0.91180 0.91115 0.95121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.84 71.98 0.64 -2.58 16 2 C -0.10 -2.53 2.51 -10.79 -0.03 -2.56 16 3 C -0.14 -3.08 8.84 71.98 0.64 -2.44 16 4 C -0.07 -2.04 1.78 -10.79 -0.02 -2.06 16 5 C -0.11 -3.64 4.58 30.59 0.14 -3.50 16 6 C -0.10 -3.53 5.30 30.59 0.16 -3.37 16 7 C -0.10 -4.13 2.40 -10.79 -0.03 -4.15 16 8 C 0.22 10.98 1.32 29.85 0.04 11.02 16 9 H 0.03 1.68 4.68 -2.39 -0.01 1.67 16 10 O -0.60 -31.03 11.34 -148.98 -1.69 -32.72 16 11 C -0.64 -35.81 8.03 25.60 0.21 -35.60 16 12 H 0.05 2.65 6.71 -2.91 -0.02 2.63 16 13 C -0.02 -1.28 5.40 84.65 0.46 -0.82 16 14 N -0.93 -58.53 13.53 21.45 0.29 -58.24 16 15 Si 1.11 51.02 29.90 68.60 2.05 53.08 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 18 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 19 C -0.10 -3.55 5.20 30.59 0.16 -3.39 16 20 C -0.11 -3.80 4.58 30.59 0.14 -3.66 16 21 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.05 1.19 6.43 -2.39 -0.02 1.18 16 23 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 24 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 25 H 0.05 1.17 6.43 -2.39 -0.02 1.16 16 26 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.07 2.12 6.43 -2.39 -0.02 2.11 16 30 H 0.03 1.21 6.43 -2.38 -0.02 1.20 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.05 1.79 7.68 -2.38 -0.02 1.77 16 33 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.36 16.78 9.04 -74.06 -0.67 16.11 16 35 H 0.27 17.34 6.47 -92.70 -0.60 16.74 16 36 H 0.05 1.90 6.62 -2.38 -0.02 1.88 16 37 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.07 2.18 6.43 -2.39 -0.02 2.16 16 39 H 0.03 1.32 6.43 -2.38 -0.02 1.30 16 Total: -1.00 -64.86 287.90 3.68 -61.19 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: 0.52 Total: 29.82 kcal Atomic # 6 Polarization: -55.62 SS G_CDS: 2.50 Total: -53.12 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.29 Total: -58.24 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -1.69 Total: -32.72 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.05 Total: 53.08 kcal Total: -64.86 3.68 -61.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306461057.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.622 kcal (2) G-P(sol) polarization free energy of solvation -64.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds