Wall clock time and date at job start Mon Mar 30 2020 03:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46977 * 2 1 4 4 C 1.53002 * 109.47315 * 119.99570 * 2 1 3 5 5 C 1.52995 * 109.47162 * 171.32604 * 4 2 1 6 6 C 1.52997 * 109.49525 * 304.96984 * 5 4 2 7 7 C 1.53094 * 109.47889 * 184.93645 * 5 4 2 8 8 C 1.53169 * 109.16563 * 297.62916 * 7 5 4 9 9 C 1.53179 * 109.03653 * 303.02032 * 8 7 5 10 10 C 1.53091 * 109.16428 * 56.98247 * 9 8 7 11 11 H 1.08994 * 109.48101 * 62.37516 * 10 9 8 12 12 C 1.50697 * 109.48099 * 182.41024 * 10 9 8 13 13 H 1.08001 * 120.00448 * 5.36650 * 12 10 9 14 14 C 1.37877 * 120.00196 * 185.37253 * 12 10 9 15 15 N 1.31514 * 119.99733 * 35.86665 * 14 12 10 16 16 Si 1.86795 * 120.00135 * 215.87505 * 14 12 10 17 17 H 1.48498 * 109.47561 * 89.99784 * 16 14 12 18 18 H 1.48505 * 109.47192 * 209.99992 * 16 14 12 19 19 H 1.48506 * 109.47099 * 329.99594 * 16 14 12 20 20 O 1.42902 * 109.47940 * 64.99787 * 5 4 2 21 21 H 1.09003 * 109.47119 * 299.99792 * 1 2 3 22 22 H 1.08993 * 109.47012 * 60.00052 * 1 2 3 23 23 H 1.09002 * 109.46720 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47568 * 239.99928 * 2 1 3 25 25 H 1.08998 * 109.46832 * 66.06192 * 3 2 1 26 26 H 1.08996 * 109.46737 * 186.06033 * 3 2 1 27 27 H 1.09003 * 109.46866 * 306.05828 * 3 2 1 28 28 H 1.09004 * 109.46465 * 51.33067 * 4 2 1 29 29 H 1.09000 * 109.47477 * 291.33482 * 4 2 1 30 30 H 1.09006 * 109.46976 * 299.96917 * 6 5 4 31 31 H 1.09003 * 109.47108 * 59.96720 * 6 5 4 32 32 H 1.08996 * 109.47752 * 179.97438 * 6 5 4 33 33 H 1.09001 * 109.51861 * 177.72322 * 7 5 4 34 34 H 1.08995 * 109.52256 * 57.53924 * 7 5 4 35 35 H 1.09004 * 109.54386 * 183.15131 * 8 7 5 36 36 H 1.09005 * 109.54286 * 62.88861 * 8 7 5 37 37 H 1.09003 * 109.52353 * 176.88595 * 9 8 7 38 38 H 1.09000 * 109.52178 * 297.06940 * 9 8 7 39 39 H 0.97002 * 119.99692 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5545 -0.9123 1.1453 6 6 3.8889 -1.6409 -0.1578 7 6 4.0474 -1.7409 2.3345 8 6 3.7632 -0.9774 3.6316 9 6 4.4375 0.3962 3.5608 10 6 3.9295 1.1423 2.3243 11 1 2.8556 1.3053 2.4138 12 6 4.6323 2.4708 2.2150 13 1 5.4284 2.7188 2.9015 14 6 4.2591 3.3700 1.2387 15 7 2.9951 3.4763 0.8913 16 14 5.5487 4.4369 0.4092 17 1 6.0762 3.7350 -0.7884 18 1 4.9352 5.7252 -0.0022 19 1 6.6598 4.6989 1.3590 20 8 4.1977 0.3637 1.1563 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8935 -0.5138 -0.8900 25 1 1.7680 1.9240 0.9393 26 1 3.1246 1.4444 -0.1085 27 1 1.5908 1.9867 -0.8308 28 1 1.5558 -1.6943 1.3301 29 1 1.8087 -0.1257 2.1325 30 1 3.3990 -2.6147 -0.1657 31 1 3.5378 -1.0508 -1.0044 32 1 4.9678 -1.7765 -0.2319 33 1 5.1197 -1.9117 2.2399 34 1 3.5254 -2.6976 2.3531 35 1 4.1618 -1.5361 4.4784 36 1 2.6873 -0.8497 3.7513 37 1 4.1945 0.9679 4.4565 38 1 5.5177 0.2685 3.4911 39 1 2.7325 4.1092 0.2046 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306498287.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:41 Heat of formation + Delta-G solvation = -55.934505 kcal Electronic energy + Delta-G solvation = -17768.222264 eV Core-core repulsion = 15289.653466 eV Total energy + Delta-G solvation = -2478.568798 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.28569 -34.84716 -33.42787 -32.40162 -31.24789 -27.57357 -26.21157 -25.95101 -24.85209 -22.25142 -20.61686 -19.65237 -17.58298 -16.61213 -15.46722 -14.91038 -14.28584 -14.13430 -13.69994 -13.39485 -12.80478 -12.63168 -12.12567 -12.00564 -11.91794 -11.63568 -11.33601 -11.13654 -11.06742 -10.91447 -10.55103 -10.48973 -10.30577 -10.23008 -10.11285 -9.71187 -9.56608 -9.48499 -9.32145 -8.87404 -7.70977 -7.68877 -6.14979 -3.98665 3.36170 3.44813 3.50284 4.47510 4.83430 5.30308 5.43037 5.51899 5.64593 5.73520 5.79169 5.81473 6.01379 6.09973 6.12798 6.27157 6.33451 6.36532 6.42176 6.42757 6.50256 6.58254 6.65837 6.73125 6.87671 6.92393 6.93942 6.99433 7.06676 7.17549 7.34910 7.63213 7.74954 7.91342 8.33787 8.45737 8.85791 9.13660 9.58077 10.82365 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023688 B = 0.012937 C = 0.010178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.732691 B = 2163.784564 C = 2750.280961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 C -0.132 4.132 4 C -0.130 4.130 5 C 0.110 3.890 6 C -0.137 4.137 7 C -0.137 4.137 8 C -0.122 4.122 9 C -0.141 4.141 10 C 0.208 3.792 11 H 0.036 0.964 12 C -0.548 4.548 13 H 0.062 0.938 14 C 0.103 3.897 15 N -0.822 5.822 16 Si 0.859 3.141 17 H -0.277 1.277 18 H -0.291 1.291 19 H -0.274 1.274 20 O -0.366 6.366 21 H 0.049 0.951 22 H 0.044 0.956 23 H 0.037 0.963 24 H 0.053 0.947 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.011 0.989 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.519 -8.089 -0.099 8.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.189 4.189 4 C -0.168 4.168 5 C 0.070 3.930 6 C -0.194 4.194 7 C -0.174 4.174 8 C -0.159 4.159 9 C -0.179 4.179 10 C 0.153 3.847 11 H 0.053 0.947 12 C -0.583 4.583 13 H 0.080 0.920 14 C -0.106 4.106 15 N -0.455 5.455 16 Si 0.686 3.314 17 H -0.203 1.203 18 H -0.218 1.218 19 H -0.199 1.199 20 O -0.286 6.286 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.115 0.885 26 H 0.105 0.895 27 H 0.030 0.970 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.555 -7.929 -0.337 8.338 hybrid contribution 0.533 0.347 -0.374 0.738 sum -2.022 -7.582 -0.711 7.879 Atomic orbital electron populations 1.21839 0.97261 0.99685 1.01082 1.21401 0.93709 1.00324 0.96786 1.22535 1.03451 0.90257 1.02700 1.22150 0.96174 0.99127 0.99357 1.21181 0.91485 0.87212 0.93148 1.21800 1.01139 0.98762 0.97685 1.22127 1.00986 0.98055 0.96277 1.21654 1.00444 0.97451 0.96372 1.22204 0.99875 0.94605 1.01207 1.19772 0.96551 0.88165 0.80190 0.94667 1.20668 1.21510 0.98098 1.18008 0.92003 1.24836 0.94087 0.95547 0.96105 1.70385 1.14844 1.32110 1.28127 0.87172 0.84101 0.79294 0.80871 1.20332 1.21775 1.19906 1.88281 1.70924 1.25025 1.44381 0.93142 0.93651 0.94380 0.92859 0.88546 0.89519 0.97033 0.93594 0.91211 0.92899 0.91797 0.92870 0.92124 0.92903 0.93544 0.92503 0.92641 0.92904 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.18 37.16 0.34 -2.00 16 2 C -0.10 -1.97 2.66 -90.61 -0.24 -2.21 16 3 C -0.13 -3.00 5.29 37.16 0.20 -2.80 16 4 C -0.13 -2.43 3.32 -26.73 -0.09 -2.52 16 5 C 0.11 2.14 0.79 -90.58 -0.07 2.06 16 6 C -0.14 -2.35 8.38 37.16 0.31 -2.03 16 7 C -0.14 -2.39 4.92 -26.60 -0.13 -2.52 16 8 C -0.12 -2.18 5.72 -26.55 -0.15 -2.33 16 9 C -0.14 -3.00 5.36 -26.59 -0.14 -3.14 16 10 C 0.21 5.10 1.55 -27.84 -0.04 5.06 16 11 H 0.04 0.93 4.49 -51.93 -0.23 0.70 16 12 C -0.55 -14.94 8.55 -34.44 -0.29 -15.23 16 13 H 0.06 1.71 7.96 -52.49 -0.42 1.29 16 14 C 0.10 2.77 4.64 -17.82 -0.08 2.69 16 15 N -0.82 -21.88 8.35 55.43 0.46 -21.41 16 16 Si 0.86 20.82 29.66 -169.99 -5.04 15.78 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 O -0.37 -8.74 7.15 -35.23 -0.25 -8.99 16 21 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.98 5.87 -51.93 -0.30 0.68 16 25 H 0.10 2.41 4.95 -51.93 -0.26 2.16 16 26 H 0.09 2.21 4.46 -51.93 -0.23 1.98 16 27 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 29 H 0.07 1.42 4.93 -51.93 -0.26 1.16 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.14 6.16 -51.93 -0.32 0.82 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.00 6.73 -51.93 -0.35 0.65 16 37 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 278.39 15.07 4.20 4.20 Total: -1.00 -26.62 278.39 -7.61 -34.23 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.58 Total: 1.17 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: -0.40 Total: -24.98 kcal Atomic # 7 Polarization: -21.88 SS G_CDS: 0.46 Total: -21.41 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.25 Total: -8.99 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.04 Total: 15.78 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -26.62 -7.61 -34.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306498287.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.705 kcal (2) G-P(sol) polarization free energy of solvation -26.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds