Wall clock time and date at job start Mon Mar 30 2020 03:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46841 * 2 1 4 4 C 1.52991 * 109.47100 * 120.00316 * 2 1 3 5 5 C 1.53002 * 109.47379 * 81.33608 * 4 2 1 6 6 C 1.53001 * 109.47793 * 305.16865 * 5 4 2 7 7 C 1.53099 * 109.48104 * 65.18795 * 5 4 2 8 8 C 1.53172 * 109.15703 * 62.39118 * 7 5 4 9 9 C 1.53173 * 109.04038 * 56.98299 * 8 7 5 10 10 C 1.53095 * 109.16206 * 303.01479 * 9 8 7 11 11 H 1.09000 * 109.47933 * 297.61556 * 10 9 8 12 12 C 1.50698 * 109.48364 * 177.59230 * 10 9 8 13 13 H 1.08003 * 119.99664 * 354.74821 * 12 10 9 14 14 C 1.37869 * 120.00265 * 174.74093 * 12 10 9 15 15 N 1.31516 * 120.00122 * 358.99846 * 14 12 10 16 16 Si 1.86799 * 120.00101 * 178.99332 * 14 12 10 17 17 H 1.48499 * 109.47085 * 180.02562 * 16 14 12 18 18 H 1.48491 * 109.47277 * 300.00457 * 16 14 12 19 19 H 1.48504 * 109.46816 * 60.00349 * 16 14 12 20 20 O 1.42899 * 109.49466 * 185.13962 * 5 4 2 21 21 H 1.08992 * 109.47220 * 303.95964 * 1 2 3 22 22 H 1.09003 * 109.47110 * 63.96265 * 1 2 3 23 23 H 1.09001 * 109.46985 * 183.95592 * 1 2 3 24 24 H 1.09002 * 109.46892 * 240.00495 * 2 1 3 25 25 H 1.08997 * 109.46841 * 179.97438 * 3 2 1 26 26 H 1.08992 * 109.47562 * 299.99958 * 3 2 1 27 27 H 1.09002 * 109.46974 * 60.00544 * 3 2 1 28 28 H 1.08996 * 109.47475 * 321.33673 * 4 2 1 29 29 H 1.09001 * 109.47347 * 201.33249 * 4 2 1 30 30 H 1.09002 * 109.47458 * 189.64967 * 6 5 4 31 31 H 1.09000 * 109.47278 * 309.64613 * 6 5 4 32 32 H 1.09005 * 109.47128 * 69.64831 * 6 5 4 33 33 H 1.08999 * 109.51947 * 302.48210 * 7 5 4 34 34 H 1.08998 * 109.57052 * 182.32782 * 7 5 4 35 35 H 1.08996 * 109.54590 * 297.10702 * 8 7 5 36 36 H 1.09003 * 109.61109 * 176.89210 * 8 7 5 37 37 H 1.08997 * 109.52131 * 183.11113 * 9 8 7 38 38 H 1.09002 * 109.52605 * 62.92012 * 9 8 7 39 39 H 0.97004 * 119.99727 * 358.03444 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 2.0052 -2.2329 1.0152 6 6 0.5941 -2.6522 0.5981 7 6 2.9956 -2.6011 -0.0927 8 6 4.4127 -2.2332 0.3574 9 6 4.7209 -2.9513 1.6748 10 6 3.6638 -2.5696 2.7144 11 1 3.7107 -1.4972 2.9036 12 6 3.9259 -3.3179 3.9959 13 1 4.7095 -4.0601 4.0372 14 6 3.1657 -3.0551 5.1156 15 7 2.2247 -2.1374 5.0709 16 14 3.4720 -4.0026 6.6961 17 1 2.5287 -3.5358 7.7437 18 1 3.2627 -5.4523 6.4526 19 1 4.8678 -3.7729 7.1482 20 8 2.3670 -2.9104 2.2203 21 1 -0.3633 0.5740 0.8523 22 1 -0.3633 0.4511 -0.9234 23 1 -0.3633 -1.0252 0.0709 24 1 1.8933 -0.5138 -0.8901 25 1 3.1299 1.4425 0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9563 0.8901 28 1 1.4046 -0.4704 2.0985 29 1 3.0636 -0.4093 1.4564 30 1 0.5234 -3.7399 0.5978 31 1 -0.1300 -2.2414 1.3017 32 1 0.3835 -2.2741 -0.4023 33 1 2.7474 -2.0514 -1.0005 34 1 2.9422 -3.6719 -0.2891 35 1 4.4802 -1.1554 0.5051 36 1 5.1299 -2.5426 -0.4029 37 1 5.7066 -2.6521 2.0309 38 1 4.7021 -4.0294 1.5151 39 1 2.0846 -1.6256 4.2589 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306498288.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:43 Heat of formation + Delta-G solvation = -91.098348 kcal Electronic energy + Delta-G solvation = -17320.130413 eV Core-core repulsion = 14840.036797 eV Total energy + Delta-G solvation = -2480.093617 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.07995 -37.36876 -34.99558 -34.29890 -32.74205 -29.51941 -28.36612 -27.33733 -26.56595 -23.97761 -22.58889 -21.60819 -19.42912 -19.15839 -17.14979 -16.32840 -16.18324 -15.81063 -15.64049 -15.37386 -14.86291 -14.52911 -13.98932 -13.66444 -13.56102 -13.11640 -13.05086 -12.89219 -12.83804 -12.65684 -12.56144 -12.13998 -12.11256 -11.94880 -11.76616 -11.50942 -11.33761 -11.20588 -11.01779 -10.67450 -10.30553 -9.80029 -8.64452 -6.42862 1.50789 1.59747 1.79102 2.55526 3.00930 3.54806 3.75889 3.88991 4.00993 4.02974 4.13758 4.18659 4.27336 4.45117 4.51841 4.65870 4.71310 4.75605 4.77753 4.80792 4.85921 4.93871 4.95684 5.03836 5.05382 5.07713 5.16073 5.21362 5.25691 5.32806 5.46483 5.49055 5.52125 5.62232 6.03175 6.14405 6.57477 7.05519 7.49455 8.75143 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031384 B = 0.008884 C = 0.008125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.950196 B = 3150.880472 C = 3445.396278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.088 4.088 3 C -0.144 4.144 4 C -0.126 4.126 5 C 0.093 3.907 6 C -0.134 4.134 7 C -0.132 4.132 8 C -0.117 4.117 9 C -0.132 4.132 10 C 0.203 3.797 11 H -0.016 1.016 12 C -0.625 4.625 13 H 0.050 0.950 14 C -0.019 4.019 15 N -0.916 5.916 16 Si 1.115 2.885 17 H -0.282 1.282 18 H -0.274 1.274 19 H -0.266 1.266 20 O -0.402 6.402 21 H 0.039 0.961 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.041 0.959 28 H 0.032 0.968 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.866 3.378 -12.516 12.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.106 4.106 3 C -0.201 4.201 4 C -0.164 4.164 5 C 0.053 3.947 6 C -0.190 4.190 7 C -0.170 4.170 8 C -0.154 4.154 9 C -0.170 4.170 10 C 0.148 3.852 11 H 0.002 0.998 12 C -0.662 4.662 13 H 0.069 0.931 14 C -0.221 4.221 15 N -0.552 5.552 16 Si 0.936 3.064 17 H -0.207 1.207 18 H -0.199 1.199 19 H -0.191 1.191 20 O -0.322 6.322 21 H 0.058 0.942 22 H 0.090 0.910 23 H 0.099 0.901 24 H 0.105 0.895 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.124 0.876 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.499 3.082 -10.895 11.422 hybrid contribution 0.745 0.410 -1.196 1.467 sum -0.755 3.492 -12.091 12.608 Atomic orbital electron populations 1.22471 0.94690 1.03936 1.01756 1.21126 0.96561 0.96104 0.96840 1.21842 1.00673 0.95707 1.01915 1.22143 1.00072 0.95799 0.98385 1.21661 0.95353 0.91329 0.86336 1.22117 0.94017 1.00984 1.01918 1.22138 0.94698 1.01553 0.98571 1.21637 0.97372 0.99894 0.96474 1.22008 0.98983 0.99739 0.96317 1.19624 0.80775 0.93183 0.91627 0.99844 1.22359 1.20993 1.26618 0.96251 0.93148 1.27373 0.92073 0.96791 1.05836 1.70797 1.31000 1.21793 1.31608 0.82993 0.76909 0.74959 0.71533 1.20688 1.19910 1.19055 1.88261 1.36762 1.66972 1.40241 0.94199 0.90962 0.90121 0.89477 0.93142 0.90680 0.93946 0.94944 0.93479 0.93439 0.93256 0.87582 0.88556 0.92187 0.92228 0.90033 0.92613 0.93424 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 8.53 71.98 0.61 -3.56 16 2 C -0.09 -2.35 2.43 -10.80 -0.03 -2.38 16 3 C -0.14 -3.48 9.09 71.98 0.65 -2.83 16 4 C -0.13 -4.69 3.42 30.59 0.10 -4.59 16 5 C 0.09 3.61 0.88 -10.76 -0.01 3.60 16 6 C -0.13 -4.43 6.99 71.98 0.50 -3.93 16 7 C -0.13 -4.29 4.75 30.68 0.15 -4.15 16 8 C -0.12 -3.97 5.72 30.71 0.18 -3.80 16 9 C -0.13 -5.82 5.36 30.68 0.16 -5.66 16 10 C 0.20 10.92 1.71 29.88 0.05 10.98 16 11 H -0.02 -0.92 6.05 -2.39 -0.01 -0.93 16 12 C -0.63 -37.42 8.76 25.60 0.22 -37.19 16 13 H 0.05 2.95 7.75 -2.91 -0.02 2.93 16 14 C -0.02 -1.15 5.42 84.65 0.46 -0.69 16 15 N -0.92 -58.46 13.57 21.44 0.29 -58.17 16 16 Si 1.12 52.02 29.90 68.60 2.05 54.07 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 19 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 20 O -0.40 -21.13 9.09 -148.98 -1.35 -22.49 16 21 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 23 H 0.08 1.98 3.53 -2.39 -0.01 1.97 16 24 H 0.09 2.04 5.89 -2.39 -0.01 2.02 16 25 H 0.05 1.22 8.12 -2.39 -0.02 1.20 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.03 1.40 7.96 -2.39 -0.02 1.38 16 29 H 0.05 1.89 4.82 -2.39 -0.01 1.88 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 1.73 7.24 -2.39 -0.02 1.72 16 32 H 0.11 2.64 5.96 -2.38 -0.01 2.62 16 33 H 0.10 2.43 6.16 -2.39 -0.01 2.41 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.06 2.01 6.51 -2.39 -0.02 1.99 16 36 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.26 17.13 6.65 -92.71 -0.62 16.51 16 Total: -1.00 -69.40 286.87 5.21 -64.19 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 1.16 Total: 16.59 kcal Atomic # 6 Polarization: -57.25 SS G_CDS: 3.06 Total: -54.19 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 0.29 Total: -58.17 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -1.35 Total: -22.49 kcal Atomic # 14 Polarization: 52.02 SS G_CDS: 2.05 Total: 54.07 kcal Total: -69.40 5.21 -64.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306498288.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.909 kcal (2) G-P(sol) polarization free energy of solvation -69.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds