Wall clock time and date at job start Mon Mar 30 2020 03:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47393 * 2 1 4 4 C 1.52999 * 110.35466 * 181.44034 * 3 2 1 5 5 C 1.53004 * 109.46952 * 298.55895 * 4 3 2 6 6 C 1.53000 * 109.47006 * 58.55781 * 4 3 2 7 7 C 1.54947 * 110.30843 * 59.29468 * 3 2 1 8 8 C 1.55312 * 100.98063 * 204.66150 * 7 3 2 9 9 C 1.54389 * 102.24962 * 34.11331 * 8 7 3 10 10 C 1.52991 * 109.82771 * 98.24918 * 9 8 7 11 11 C 1.50697 * 109.82745 * 219.12932 * 9 8 7 12 12 H 1.08002 * 120.00010 * 0.02562 * 11 9 8 13 13 C 1.37874 * 120.00017 * 180.02562 * 11 9 8 14 14 N 1.31522 * 119.99766 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 120.00221 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47271 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47093 * 120.00199 * 15 13 11 18 18 H 1.48507 * 109.46815 * 239.99862 * 15 13 11 19 19 O 1.43236 * 107.58903 * 338.64197 * 9 8 7 20 20 H 1.09005 * 109.46463 * 60.00324 * 1 2 3 21 21 H 1.08996 * 109.47500 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47191 * 300.00621 * 1 2 3 23 23 H 1.09002 * 109.47191 * 239.99379 * 2 1 3 24 24 H 1.09005 * 109.46463 * 119.99676 * 2 1 3 25 25 H 1.08998 * 109.47012 * 178.55949 * 4 3 2 26 26 H 1.09000 * 109.46713 * 60.00051 * 5 4 3 27 27 H 1.08998 * 109.46689 * 179.97438 * 5 4 3 28 28 H 1.08993 * 109.47364 * 300.00026 * 5 4 3 29 29 H 1.09002 * 109.47211 * 53.70180 * 6 4 3 30 30 H 1.09001 * 109.47034 * 173.69282 * 6 4 3 31 31 H 1.08994 * 109.47471 * 293.70063 * 6 4 3 32 32 H 1.09003 * 111.12455 * 86.72585 * 7 3 2 33 33 H 1.08997 * 111.12463 * 322.59986 * 7 3 2 34 34 H 1.08997 * 110.84488 * 152.30185 * 8 7 3 35 35 H 1.09004 * 110.84569 * 275.92643 * 8 7 3 36 36 H 1.09002 * 109.47940 * 59.99655 * 10 9 8 37 37 H 1.09000 * 109.47287 * 179.97438 * 10 9 8 38 38 H 1.08999 * 109.47453 * 299.99648 * 10 9 8 39 39 H 0.96999 * 119.99741 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5695 1.4661 -0.0361 5 6 4.1198 0.7739 1.2125 6 6 4.0615 0.7320 -1.2850 7 6 1.5198 2.1968 1.2494 8 6 1.5695 3.6665 0.7496 9 6 1.2223 3.5154 -0.7471 10 6 -0.2606 3.8197 -0.9691 11 6 2.0657 4.4590 -1.5653 12 1 2.7805 5.1052 -1.0777 13 6 1.9247 4.4972 -2.9362 14 7 1.0538 3.7105 -3.5299 15 14 2.9706 5.6662 -3.9505 16 1 3.8653 6.4376 -3.0506 17 1 3.7890 4.8882 -4.9149 18 1 2.0885 6.6027 -4.6923 19 8 1.5040 2.1621 -1.1223 20 1 -0.3632 0.5138 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.8934 -0.5139 -0.8899 24 1 1.8932 -0.5138 0.8901 25 1 3.9163 2.4991 -0.0615 26 1 3.7728 -0.2591 1.2379 27 1 5.2093 0.7904 1.1866 28 1 3.7692 1.2968 2.1022 29 1 3.5815 1.1546 -2.1677 30 1 5.1424 0.8445 -1.3703 31 1 3.8114 -0.3260 -1.2068 32 1 2.1829 2.0492 2.1019 33 1 0.4998 1.8987 1.4919 34 1 0.8242 4.2756 1.2612 35 1 2.5678 4.0856 0.8759 36 1 -0.4738 4.8403 -0.6512 37 1 -0.4992 3.7118 -2.0272 38 1 -0.8653 3.1242 -0.3872 39 1 0.9549 3.7372 -4.4945 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306712078.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:14 Heat of formation + Delta-G solvation = -64.912068 kcal Electronic energy + Delta-G solvation = -17661.148005 eV Core-core repulsion = 15182.189911 eV Total energy + Delta-G solvation = -2478.958094 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.29276 -35.02303 -32.50759 -31.66602 -30.96732 -28.63451 -26.50668 -25.19923 -24.54149 -22.26419 -21.39231 -19.34585 -17.87533 -16.37156 -15.12209 -14.74339 -14.46060 -13.90292 -13.66477 -13.45473 -12.86453 -12.52272 -11.97946 -11.86630 -11.68902 -11.41853 -11.21251 -11.07379 -10.96851 -10.84665 -10.72021 -10.55097 -10.48928 -10.34849 -10.09235 -9.96761 -9.84956 -9.35912 -9.12746 -8.92893 -8.39667 -7.68612 -5.87029 -4.02327 3.32326 3.40992 3.44081 4.47999 4.96811 5.39491 5.43481 5.45997 5.64031 5.68887 5.78432 5.91819 5.99070 6.06972 6.12408 6.20681 6.26188 6.34939 6.39245 6.45785 6.56076 6.60182 6.66968 6.73230 6.75779 6.85757 6.93355 7.00961 7.07224 7.14271 7.17207 7.26887 7.56201 7.86987 8.19663 8.47446 8.77654 9.17980 9.68421 11.14340 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.027586 B = 0.011333 C = 0.010105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.782173 B = 2470.172476 C = 2770.139137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C 0.113 3.887 4 C -0.100 4.100 5 C -0.147 4.147 6 C -0.136 4.136 7 C -0.155 4.155 8 C -0.140 4.140 9 C 0.231 3.769 10 C -0.138 4.138 11 C -0.528 4.528 12 H 0.055 0.945 13 C 0.082 3.918 14 N -0.860 5.860 15 Si 0.881 3.119 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.285 1.285 19 O -0.337 6.337 20 H 0.068 0.932 21 H 0.039 0.961 22 H 0.048 0.952 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.032 0.968 37 H 0.089 0.911 38 H 0.010 0.990 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.662 -5.494 7.389 9.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C 0.072 3.928 4 C -0.119 4.119 5 C -0.205 4.205 6 C -0.194 4.194 7 C -0.193 4.193 8 C -0.178 4.178 9 C 0.193 3.807 10 C -0.196 4.196 11 C -0.566 4.566 12 H 0.073 0.927 13 C -0.122 4.122 14 N -0.497 5.497 15 Si 0.709 3.291 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.211 1.211 19 O -0.256 6.256 20 H 0.088 0.912 21 H 0.058 0.942 22 H 0.067 0.933 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.094 0.906 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.108 0.892 38 H 0.030 0.970 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.541 -5.622 7.002 9.111 hybrid contribution 0.689 0.787 -0.372 1.111 sum 2.231 -4.835 6.630 8.503 Atomic orbital electron populations 1.21758 0.96103 0.99935 1.02688 1.21591 0.96052 0.96369 1.00992 1.21962 0.91516 0.91732 0.87552 1.21393 0.96027 1.00321 0.94145 1.21972 0.99947 1.00317 0.98225 1.21702 0.99261 0.99070 0.99334 1.23415 1.00723 0.97075 0.98059 1.23199 1.00782 0.94776 0.99068 1.19551 0.92391 0.80839 0.87901 1.21972 0.96604 0.96986 1.04024 1.21311 1.22425 1.20979 0.91906 0.92667 1.24952 0.94657 0.94716 0.97903 1.69965 1.33677 1.36919 1.09144 0.86730 0.80680 0.81137 0.80519 1.19882 1.21027 1.21114 1.88736 1.82153 1.23623 1.31074 0.91245 0.94213 0.93282 0.91801 0.92447 0.90591 0.93027 0.93522 0.92933 0.90950 0.94327 0.93851 0.91879 0.91406 0.92686 0.92073 0.94929 0.89231 0.97047 0.93332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.47 37.16 0.35 -2.14 16 2 C -0.11 -1.94 4.64 -26.73 -0.12 -2.06 16 3 C 0.11 2.21 0.28 -89.59 -0.03 2.19 16 4 C -0.10 -1.85 2.44 -90.62 -0.22 -2.07 16 5 C -0.15 -2.18 8.65 37.16 0.32 -1.86 16 6 C -0.14 -2.51 8.59 37.16 0.32 -2.19 16 7 C -0.16 -2.84 5.83 -24.48 -0.14 -2.99 16 8 C -0.14 -2.95 5.69 -24.78 -0.14 -3.09 16 9 C 0.23 5.69 0.82 -91.05 -0.07 5.62 16 10 C -0.14 -3.38 8.51 37.15 0.32 -3.07 16 11 C -0.53 -14.43 8.22 -34.44 -0.28 -14.72 16 12 H 0.06 1.51 7.52 -52.49 -0.39 1.11 16 13 C 0.08 2.28 5.26 -17.82 -0.09 2.18 16 14 N -0.86 -24.59 10.92 55.43 0.61 -23.98 16 15 Si 0.88 21.34 29.54 -169.99 -5.02 16.32 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 O -0.34 -8.25 8.23 -35.23 -0.29 -8.54 16 20 H 0.07 1.36 7.63 -51.93 -0.40 0.97 16 21 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.79 6.12 -51.93 -0.32 0.47 16 23 H 0.06 1.13 6.56 -51.93 -0.34 0.79 16 24 H 0.06 0.86 6.63 -51.93 -0.34 0.52 16 25 H 0.08 1.59 7.51 -51.93 -0.39 1.20 16 26 H 0.05 0.70 6.57 -51.93 -0.34 0.36 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.74 6.15 -51.93 -0.32 0.42 16 29 H 0.07 1.58 7.66 -51.93 -0.40 1.19 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.71 6.80 -51.93 -0.35 0.36 16 32 H 0.06 1.02 5.91 -51.93 -0.31 0.71 16 33 H 0.07 1.20 5.85 -51.93 -0.30 0.90 16 34 H 0.05 1.09 7.82 -51.93 -0.41 0.68 16 35 H 0.06 1.29 7.33 -51.93 -0.38 0.91 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 2.44 6.01 -51.93 -0.31 2.12 16 38 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 289.47 15.07 4.36 4.36 Total: -1.00 -28.32 289.47 -6.69 -35.02 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.55 Total: 1.02 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: 0.20 Total: -24.19 kcal Atomic # 7 Polarization: -24.59 SS G_CDS: 0.61 Total: -23.98 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.29 Total: -8.54 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.32 -6.69 -35.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306712078.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.894 kcal (2) G-P(sol) polarization free energy of solvation -28.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds