Wall clock time and date at job start Mon Mar 30 2020 03:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47159 * 2 1 4 4 C 1.53007 * 109.47287 * 59.99881 * 3 2 1 5 5 C 1.53007 * 109.47133 * 299.99950 * 3 2 1 6 6 C 1.53000 * 109.47482 * 179.97438 * 3 2 1 7 7 H 1.09002 * 109.47903 * 300.00099 * 6 3 2 8 8 C 1.53093 * 109.48240 * 179.97438 * 6 3 2 9 9 C 1.53178 * 109.16255 * 182.39519 * 8 6 3 10 10 C 1.53178 * 109.03511 * 56.98447 * 9 8 6 11 11 C 1.53096 * 109.16278 * 303.01594 * 10 9 8 12 12 H 1.09003 * 109.48254 * 177.58780 * 11 10 9 13 13 C 1.50697 * 109.48418 * 297.61704 * 11 10 9 14 14 H 1.08004 * 119.99202 * 359.97438 * 13 11 10 15 15 C 1.37871 * 120.00289 * 179.97438 * 13 11 10 16 16 N 1.31509 * 120.00175 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00107 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47124 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47287 * 120.00193 * 17 15 13 20 20 H 1.48497 * 109.47283 * 240.00378 * 17 15 13 21 21 O 1.42904 * 109.47799 * 60.02362 * 6 3 2 22 22 H 1.09001 * 109.46762 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47156 * 300.00269 * 1 2 3 24 24 H 1.09002 * 109.46848 * 60.00090 * 1 2 3 25 25 H 1.09005 * 109.47339 * 240.00355 * 2 1 3 26 26 H 1.09002 * 109.47374 * 119.99905 * 2 1 3 27 27 H 1.08993 * 109.47327 * 180.02562 * 4 3 2 28 28 H 1.08999 * 109.46642 * 299.99990 * 4 3 2 29 29 H 1.08992 * 109.46701 * 59.99546 * 4 3 2 30 30 H 1.09002 * 109.46841 * 299.99624 * 5 3 2 31 31 H 1.08995 * 109.46924 * 60.00181 * 5 3 2 32 32 H 1.09001 * 109.47182 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.52228 * 302.30500 * 8 6 3 34 34 H 1.08998 * 109.52401 * 62.49349 * 8 6 3 35 35 H 1.09002 * 109.54461 * 176.84793 * 9 8 6 36 36 H 1.08996 * 109.54596 * 297.11552 * 9 8 6 37 37 H 1.08999 * 109.52488 * 62.92180 * 10 9 8 38 38 H 1.09004 * 109.52654 * 183.11392 * 10 9 8 39 39 H 0.96998 * 120.00345 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2493 5 6 1.5300 2.1638 -1.2493 6 6 3.5700 1.4426 0.0006 7 1 3.9331 0.9289 0.8908 8 6 4.0805 2.8859 0.0000 9 6 5.6111 2.8778 -0.0598 10 6 6.0584 2.1025 -1.3029 11 6 5.4715 0.6894 -1.2519 12 1 5.7513 0.1468 -2.1550 13 6 6.0081 -0.0345 -0.0440 14 1 6.6989 0.4628 0.6207 15 6 5.6173 -1.3316 0.2124 16 7 4.7765 -1.9373 -0.5974 17 14 6.2830 -2.2291 1.7093 18 1 7.2054 -1.3342 2.4534 19 1 5.1559 -2.6224 2.5925 20 1 7.0167 -3.4440 1.2723 21 8 4.0470 0.7693 -1.1661 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8929 3.1915 1.2490 28 1 0.4400 2.1638 1.2492 29 1 1.8932 1.6499 2.1392 30 1 1.8934 1.6499 -2.1393 31 1 0.4400 2.1638 -1.2493 32 1 1.8930 3.1916 -1.2491 33 1 3.6847 3.4118 -0.8688 34 1 3.7543 3.3881 0.9107 35 1 5.9792 3.9022 -0.1170 36 1 6.0084 2.3956 0.8333 37 1 5.7026 2.6126 -2.1980 38 1 7.1467 2.0443 -1.3239 39 1 4.5013 -2.8497 -0.4168 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306782184.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:49 Heat of formation + Delta-G solvation = -77.335871 kcal Electronic energy + Delta-G solvation = -17528.719928 eV Core-core repulsion = 15049.223097 eV Total energy + Delta-G solvation = -2479.496831 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.88165 -36.09761 -32.53343 -32.09655 -30.50132 -28.30659 -26.79241 -25.43192 -24.37975 -22.58342 -21.32705 -18.92674 -17.80959 -16.18561 -15.24344 -14.64044 -14.34454 -14.12524 -13.92119 -13.48817 -13.13847 -12.59767 -12.28054 -12.16547 -11.85241 -11.60715 -11.52152 -11.22313 -11.06077 -10.90433 -10.67749 -10.55801 -10.43008 -10.09462 -10.06594 -9.81891 -9.74135 -9.45777 -9.19068 -8.56729 -8.36498 -7.62862 -5.93466 -4.07255 3.28842 3.37930 3.40939 4.44180 5.11333 5.34472 5.41790 5.54293 5.72116 5.82578 5.88877 5.91733 5.96545 6.07537 6.11966 6.15997 6.29368 6.34230 6.37629 6.41989 6.51702 6.54834 6.58234 6.71428 6.79071 6.83667 6.89298 6.98329 7.07359 7.16040 7.16586 7.32715 7.38620 7.78481 7.93907 8.29573 8.90393 9.20454 9.64383 11.10532 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022511 B = 0.012661 C = 0.009772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.515562 B = 2210.963644 C = 2864.615172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.102 4.102 3 C -0.054 4.054 4 C -0.142 4.142 5 C -0.135 4.135 6 C 0.119 3.881 7 H 0.058 0.942 8 C -0.146 4.146 9 C -0.109 4.109 10 C -0.141 4.141 11 C 0.212 3.788 12 H 0.057 0.943 13 C -0.554 4.554 14 H 0.054 0.946 15 C 0.081 3.919 16 N -0.856 5.856 17 Si 0.877 3.123 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.284 1.284 21 O -0.364 6.364 22 H 0.044 0.956 23 H 0.046 0.954 24 H 0.051 0.949 25 H 0.081 0.919 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.036 0.964 36 H 0.066 0.934 37 H 0.039 0.961 38 H 0.052 0.948 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.628 6.800 1.503 8.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.140 4.140 3 C -0.054 4.054 4 C -0.199 4.199 5 C -0.192 4.192 6 C 0.061 3.939 7 H 0.076 0.924 8 C -0.184 4.184 9 C -0.146 4.146 10 C -0.179 4.179 11 C 0.156 3.844 12 H 0.075 0.925 13 C -0.592 4.592 14 H 0.073 0.927 15 C -0.124 4.124 16 N -0.492 5.492 17 Si 0.705 3.295 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 O -0.283 6.283 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.099 0.901 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.850 6.556 1.312 8.884 hybrid contribution 0.650 -0.463 1.132 1.385 sum -5.200 6.093 2.444 8.375 Atomic orbital electron populations 1.21926 0.97694 1.00496 1.00879 1.21378 0.93334 0.95763 1.03490 1.20496 0.95039 0.95439 0.94448 1.21947 1.00249 0.99966 0.97762 1.21855 0.99103 0.99605 0.98599 1.21459 0.90510 0.89859 0.92118 0.92401 1.22278 0.96318 0.99428 1.00375 1.21441 0.95568 0.97833 0.99798 1.22175 0.99889 0.99797 0.96055 1.19663 0.78541 0.88863 0.97287 0.92527 1.21555 1.28462 0.98275 1.10914 0.92734 1.24970 0.94348 0.97228 0.95864 1.70057 1.31112 1.12065 1.35963 0.86793 0.78993 0.79992 0.83738 1.19845 1.20999 1.21005 1.87877 1.23560 1.76575 1.40324 0.93713 0.93453 0.93044 0.90071 0.92751 0.92959 0.92906 0.93014 0.91849 0.93855 0.93486 0.92555 0.92953 0.94493 0.91571 0.94259 0.92903 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.21 37.16 0.34 -2.00 16 2 C -0.10 -1.95 4.84 -26.73 -0.13 -2.08 16 3 C -0.05 -0.98 0.41 -154.50 -0.06 -1.04 16 4 C -0.14 -2.19 7.77 37.16 0.29 -1.90 16 5 C -0.13 -2.25 7.63 37.16 0.28 -1.97 16 6 C 0.12 2.55 1.63 -26.68 -0.04 2.50 16 7 H 0.06 1.42 7.09 -51.93 -0.37 1.05 16 8 C -0.15 -2.76 4.70 -26.59 -0.12 -2.88 16 9 C -0.11 -2.13 5.78 -26.55 -0.15 -2.29 16 10 C -0.14 -3.01 5.59 -26.59 -0.15 -3.16 16 11 C 0.21 5.36 3.16 -27.84 -0.09 5.27 16 12 H 0.06 1.56 8.14 -51.93 -0.42 1.13 16 13 C -0.55 -14.89 6.59 -34.44 -0.23 -15.11 16 14 H 0.05 1.47 6.87 -52.48 -0.36 1.11 16 15 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 16 N -0.86 -24.30 12.84 55.43 0.71 -23.59 16 17 Si 0.88 21.08 29.54 -169.99 -5.02 16.06 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 O -0.36 -8.99 8.29 -35.23 -0.29 -9.28 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.66 6.43 -51.93 -0.33 0.32 16 24 H 0.05 0.74 6.43 -51.93 -0.33 0.41 16 25 H 0.08 1.81 7.68 -51.93 -0.40 1.41 16 26 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.05 0.75 6.49 -51.93 -0.34 0.42 16 28 H 0.05 0.72 6.43 -51.93 -0.33 0.39 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.18 7.68 -51.93 -0.40 0.78 16 31 H 0.04 0.63 6.43 -51.93 -0.33 0.30 16 32 H 0.05 0.74 6.38 -51.93 -0.33 0.41 16 33 H 0.06 1.03 6.32 -51.93 -0.33 0.70 16 34 H 0.05 0.89 6.57 -51.93 -0.34 0.55 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 1.39 6.85 -51.93 -0.36 1.03 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 287.65 15.07 4.33 4.33 Total: -1.00 -27.64 287.65 -7.08 -34.72 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.65 Total: 0.29 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -0.16 Total: -22.54 kcal Atomic # 7 Polarization: -24.30 SS G_CDS: 0.71 Total: -23.59 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.29 Total: -9.28 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.64 -7.08 -34.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306782184.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.616 kcal (2) G-P(sol) polarization free energy of solvation -27.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds