Wall clock time and date at job start Mon Mar 30 2020 03:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47159 * 2 1 4 4 C 1.53007 * 109.47287 * 59.99881 * 3 2 1 5 5 C 1.53007 * 109.47133 * 299.99950 * 3 2 1 6 6 C 1.53000 * 109.47482 * 179.97438 * 3 2 1 7 7 H 1.09002 * 109.47903 * 300.00099 * 6 3 2 8 8 C 1.53093 * 109.48240 * 179.97438 * 6 3 2 9 9 C 1.53178 * 109.16255 * 182.39519 * 8 6 3 10 10 C 1.53178 * 109.03511 * 56.98447 * 9 8 6 11 11 C 1.53096 * 109.16278 * 303.01594 * 10 9 8 12 12 H 1.09003 * 109.48254 * 177.58780 * 11 10 9 13 13 C 1.50697 * 109.48418 * 297.61704 * 11 10 9 14 14 H 1.08004 * 119.99202 * 359.97438 * 13 11 10 15 15 C 1.37871 * 120.00289 * 179.97438 * 13 11 10 16 16 N 1.31509 * 120.00175 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00107 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47124 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47287 * 120.00193 * 17 15 13 20 20 H 1.48497 * 109.47283 * 240.00378 * 17 15 13 21 21 O 1.42904 * 109.47799 * 60.02362 * 6 3 2 22 22 H 1.09001 * 109.46762 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47156 * 300.00269 * 1 2 3 24 24 H 1.09002 * 109.46848 * 60.00090 * 1 2 3 25 25 H 1.09005 * 109.47339 * 240.00355 * 2 1 3 26 26 H 1.09002 * 109.47374 * 119.99905 * 2 1 3 27 27 H 1.08993 * 109.47327 * 180.02562 * 4 3 2 28 28 H 1.08999 * 109.46642 * 299.99990 * 4 3 2 29 29 H 1.08992 * 109.46701 * 59.99546 * 4 3 2 30 30 H 1.09002 * 109.46841 * 299.99624 * 5 3 2 31 31 H 1.08995 * 109.46924 * 60.00181 * 5 3 2 32 32 H 1.09001 * 109.47182 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.52228 * 302.30500 * 8 6 3 34 34 H 1.08998 * 109.52401 * 62.49349 * 8 6 3 35 35 H 1.09002 * 109.54461 * 176.84793 * 9 8 6 36 36 H 1.08996 * 109.54596 * 297.11552 * 9 8 6 37 37 H 1.08999 * 109.52488 * 62.92180 * 10 9 8 38 38 H 1.09004 * 109.52654 * 183.11392 * 10 9 8 39 39 H 0.96998 * 120.00345 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2493 5 6 1.5300 2.1638 -1.2493 6 6 3.5700 1.4426 0.0006 7 1 3.9331 0.9289 0.8908 8 6 4.0805 2.8859 0.0000 9 6 5.6111 2.8778 -0.0598 10 6 6.0584 2.1025 -1.3029 11 6 5.4715 0.6894 -1.2519 12 1 5.7513 0.1468 -2.1550 13 6 6.0081 -0.0345 -0.0440 14 1 6.6989 0.4628 0.6207 15 6 5.6173 -1.3316 0.2124 16 7 4.7765 -1.9373 -0.5974 17 14 6.2830 -2.2291 1.7093 18 1 7.2054 -1.3342 2.4534 19 1 5.1559 -2.6224 2.5925 20 1 7.0167 -3.4440 1.2723 21 8 4.0470 0.7693 -1.1661 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8929 3.1915 1.2490 28 1 0.4400 2.1638 1.2492 29 1 1.8932 1.6499 2.1392 30 1 1.8934 1.6499 -2.1393 31 1 0.4400 2.1638 -1.2493 32 1 1.8930 3.1916 -1.2491 33 1 3.6847 3.4118 -0.8688 34 1 3.7543 3.3881 0.9107 35 1 5.9792 3.9022 -0.1170 36 1 6.0084 2.3956 0.8333 37 1 5.7026 2.6126 -2.1980 38 1 7.1467 2.0443 -1.3239 39 1 4.5013 -2.8497 -0.4168 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306782184.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:48 Heat of formation + Delta-G solvation = -92.252779 kcal Electronic energy + Delta-G solvation = -17529.366774 eV Core-core repulsion = 15049.223097 eV Total energy + Delta-G solvation = -2480.143676 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.53894 -37.70570 -34.47728 -33.94312 -32.09944 -29.89424 -28.10976 -27.36420 -25.87234 -24.32372 -22.99949 -20.69742 -19.37221 -18.15763 -16.89241 -16.55898 -16.13386 -15.65456 -15.41465 -15.12298 -14.88794 -14.23440 -13.88080 -13.57779 -13.52628 -13.06968 -12.94756 -12.87587 -12.68570 -12.62077 -12.50401 -12.28498 -11.92421 -11.72432 -11.63369 -11.47006 -11.25256 -11.12485 -10.86161 -10.59058 -10.28759 -9.48026 -8.04976 -6.24534 1.34663 1.37769 1.47290 2.40557 3.16763 3.61743 3.91118 4.09413 4.21493 4.33606 4.36794 4.41845 4.58301 4.63850 4.71851 4.76858 4.85684 4.87514 4.97250 4.98796 5.06868 5.14651 5.18079 5.25226 5.29965 5.31475 5.34550 5.39613 5.48572 5.51813 5.57630 5.67276 5.79685 5.82778 5.92660 6.22316 6.81219 7.27840 7.52802 8.98570 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022511 B = 0.012661 C = 0.009772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.515562 B = 2210.963644 C = 2864.615172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 C -0.055 4.055 4 C -0.136 4.136 5 C -0.127 4.127 6 C 0.115 3.885 7 H 0.017 0.983 8 C -0.140 4.140 9 C -0.107 4.107 10 C -0.135 4.135 11 C 0.207 3.793 12 H 0.019 0.981 13 C -0.559 4.559 14 H 0.051 0.949 15 C 0.035 3.965 16 N -0.887 5.887 17 Si 0.936 3.064 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.280 1.280 21 O -0.383 6.383 22 H 0.046 0.954 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.036 0.964 26 H 0.026 0.974 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.042 0.958 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.721 8.881 2.567 11.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 C -0.056 4.056 4 C -0.193 4.193 5 C -0.184 4.184 6 C 0.057 3.943 7 H 0.035 0.965 8 C -0.178 4.178 9 C -0.144 4.144 10 C -0.173 4.173 11 C 0.150 3.850 12 H 0.037 0.963 13 C -0.597 4.597 14 H 0.069 0.931 15 C -0.168 4.168 16 N -0.524 5.524 17 Si 0.762 3.238 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.206 1.206 21 O -0.303 6.303 22 H 0.066 0.934 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.055 0.945 26 H 0.045 0.955 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.933 8.648 2.381 11.336 hybrid contribution 0.999 -1.129 0.769 1.692 sum -5.934 7.519 3.150 10.083 Atomic orbital electron populations 1.21847 0.94259 1.01376 1.02546 1.21265 0.96284 0.96060 0.99912 1.20551 0.92760 0.95259 0.96988 1.21908 1.01773 1.00168 0.95471 1.21785 1.00696 0.99628 0.96309 1.21620 0.92778 0.90808 0.89095 0.96480 1.22230 0.95719 0.97585 1.02224 1.21431 0.96192 0.99114 0.97697 1.22056 0.99830 0.97605 0.97824 1.19541 0.79451 0.90949 0.95037 0.96317 1.21771 1.28082 0.98591 1.11229 0.93089 1.25654 0.94663 0.98111 0.98363 1.70186 1.32423 1.12217 1.37618 0.85856 0.78374 0.78888 0.80641 1.19144 1.20918 1.20575 1.87823 1.22911 1.77716 1.41830 0.93439 0.91214 0.91700 0.94485 0.95539 0.91269 0.90411 0.93876 0.94594 0.91233 0.91966 0.91218 0.90352 0.91056 0.93436 0.92981 0.92654 0.93474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 9.21 71.98 0.66 -3.47 16 2 C -0.10 -3.78 4.84 30.59 0.15 -3.63 16 3 C -0.06 -1.95 0.41 -52.18 -0.02 -1.97 16 4 C -0.14 -3.78 7.77 71.98 0.56 -3.23 16 5 C -0.13 -3.96 7.63 71.98 0.55 -3.41 16 6 C 0.12 4.93 1.63 30.63 0.05 4.98 16 7 H 0.02 0.87 7.09 -2.39 -0.02 0.85 16 8 C -0.14 -4.96 4.70 30.68 0.14 -4.81 16 9 C -0.11 -3.98 5.78 30.71 0.18 -3.81 16 10 C -0.14 -5.72 5.59 30.69 0.17 -5.54 16 11 C 0.21 10.79 3.16 29.88 0.09 10.88 16 12 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 13 C -0.56 -30.92 6.59 25.60 0.17 -30.75 16 14 H 0.05 2.80 6.87 -2.91 -0.02 2.78 16 15 C 0.03 1.95 5.40 84.65 0.46 2.41 16 16 N -0.89 -52.62 12.84 21.44 0.28 -52.34 16 17 Si 0.94 44.31 29.54 68.60 2.03 46.34 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 21 O -0.38 -19.56 8.29 -148.98 -1.24 -20.79 16 22 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.07 1.71 6.43 -2.39 -0.02 1.69 16 24 H 0.06 1.70 6.43 -2.39 -0.02 1.68 16 25 H 0.04 1.73 7.68 -2.38 -0.02 1.71 16 26 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.07 1.70 6.49 -2.39 -0.02 1.68 16 28 H 0.08 1.79 6.43 -2.39 -0.02 1.77 16 29 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.03 1.30 7.68 -2.39 -0.02 1.28 16 31 H 0.07 1.79 6.43 -2.39 -0.02 1.78 16 32 H 0.06 1.74 6.38 -2.39 -0.02 1.73 16 33 H 0.07 2.31 6.32 -2.39 -0.02 2.29 16 34 H 0.08 2.37 6.57 -2.39 -0.02 2.36 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.05 1.94 6.85 -2.39 -0.02 1.92 16 37 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -62.28 287.65 5.23 -57.05 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 1.00 Total: 12.10 kcal Atomic # 6 Polarization: -45.52 SS G_CDS: 3.16 Total: -42.35 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.28 Total: -52.34 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -1.24 Total: -20.79 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -62.28 5.23 -57.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306782184.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.198 kcal (2) G-P(sol) polarization free energy of solvation -62.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds