Wall clock time and date at job start Mon Mar 30 2020 03:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46929 * 2 1 4 4 C 1.52997 * 109.46918 * 60.00150 * 3 2 1 5 5 C 1.52994 * 109.46897 * 299.99890 * 3 2 1 6 6 C 1.53001 * 109.46929 * 179.97438 * 3 2 1 7 7 H 1.08992 * 109.48192 * 59.97672 * 6 3 2 8 8 C 1.53096 * 109.48000 * 180.02562 * 6 3 2 9 9 C 1.53178 * 109.16278 * 177.60185 * 8 6 3 10 10 C 1.53178 * 109.03511 * 303.01594 * 9 8 6 11 11 C 1.53093 * 109.16255 * 56.98447 * 10 9 8 12 12 H 1.09002 * 109.48198 * 62.37219 * 11 10 9 13 13 C 1.50700 * 109.47903 * 182.39629 * 11 10 9 14 14 H 1.07997 * 119.99922 * 359.97151 * 13 11 10 15 15 C 1.37882 * 119.99816 * 179.97438 * 13 11 10 16 16 N 1.31517 * 119.99969 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99922 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46705 * 90.00299 * 17 15 13 19 19 H 1.48498 * 109.47100 * 210.00046 * 17 15 13 20 20 H 1.48500 * 109.47235 * 330.00244 * 17 15 13 21 21 O 1.42904 * 109.42351 * 302.38111 * 11 10 9 22 22 H 1.08999 * 109.47014 * 60.00235 * 1 2 3 23 23 H 1.09006 * 109.46948 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47081 * 299.99801 * 1 2 3 25 25 H 1.09002 * 109.47310 * 239.99691 * 2 1 3 26 26 H 1.08999 * 109.47014 * 119.99765 * 2 1 3 27 27 H 1.09011 * 109.47099 * 180.02562 * 4 3 2 28 28 H 1.09004 * 109.47072 * 299.99618 * 4 3 2 29 29 H 1.08999 * 109.47592 * 59.99888 * 4 3 2 30 30 H 1.09002 * 109.47455 * 299.99482 * 5 3 2 31 31 H 1.08996 * 109.47470 * 60.00488 * 5 3 2 32 32 H 1.09002 * 109.46834 * 180.02562 * 5 3 2 33 33 H 1.08999 * 109.52155 * 57.69394 * 8 6 3 34 34 H 1.09004 * 109.51758 * 297.50939 * 8 6 3 35 35 H 1.09002 * 109.54068 * 183.15004 * 9 8 6 36 36 H 1.08996 * 109.54450 * 62.88578 * 9 8 6 37 37 H 1.09000 * 109.52619 * 297.07706 * 10 9 8 38 38 H 1.08997 * 109.57176 * 176.91900 * 10 9 8 39 39 H 0.97003 * 119.99695 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5300 2.1637 -1.2492 6 6 3.5700 1.4425 0.0006 7 1 3.9339 0.9283 -0.8888 8 6 4.0805 2.8859 0.0013 9 6 5.6111 2.8778 0.0625 10 6 6.0573 2.1028 1.3062 11 6 5.4704 0.6898 1.2551 12 1 5.8592 0.1660 0.3818 13 6 5.8564 -0.0601 2.5040 14 1 6.4601 0.4222 3.2585 15 6 5.4388 -1.3618 2.6833 16 7 4.7041 -1.9493 1.7642 17 14 5.9179 -2.2916 4.2311 18 1 4.8847 -2.0784 5.2762 19 1 6.0213 -3.7412 3.9257 20 1 7.2283 -1.7943 4.7217 21 8 4.0463 0.7695 1.1682 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.8929 3.1916 1.2491 28 1 0.4399 2.1637 1.2492 29 1 1.8933 1.6499 2.1393 30 1 1.8934 1.6499 -2.1392 31 1 0.4400 2.1637 -1.2492 32 1 1.8937 3.1913 -1.2494 33 1 3.6840 3.4121 0.8696 34 1 3.7550 3.3877 -0.9099 35 1 5.9791 3.9022 0.1197 36 1 6.0091 2.3953 -0.8301 37 1 5.7007 2.6132 2.2008 38 1 7.1454 2.0447 1.3292 39 1 4.4107 -2.8652 1.8902 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306782185.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:52 Heat of formation + Delta-G solvation = -78.830319 kcal Electronic energy + Delta-G solvation = -17222.179328 eV Core-core repulsion = 14742.617693 eV Total energy + Delta-G solvation = -2479.561635 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.93371 -36.10564 -32.76720 -32.20518 -30.55372 -28.51405 -26.84203 -25.39064 -24.53237 -22.56151 -21.20390 -19.16777 -17.85349 -16.49234 -15.17772 -14.77420 -14.45594 -14.21301 -14.01262 -13.66386 -13.24552 -12.62564 -12.37256 -12.26556 -11.91608 -11.68349 -11.56751 -11.31285 -10.99947 -10.87503 -10.67868 -10.55654 -10.43984 -10.25932 -10.08790 -9.89656 -9.85771 -9.59029 -9.20398 -8.76314 -8.41452 -7.73523 -5.96001 -4.07512 3.33513 3.39923 3.42551 4.45512 4.96782 5.22278 5.38604 5.46764 5.61531 5.72373 5.74952 5.77673 5.85150 6.00711 6.04743 6.06027 6.20215 6.21629 6.28914 6.32043 6.38833 6.42596 6.45087 6.63808 6.68226 6.74234 6.79963 6.89754 6.91992 6.95810 7.00751 7.15377 7.27644 7.59206 7.94876 8.36184 8.85730 9.24215 9.62312 11.11271 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025073 B = 0.010442 C = 0.008040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.491122 B = 2680.949173 C = 3481.668165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C -0.051 4.051 4 C -0.136 4.136 5 C -0.142 4.142 6 C 0.097 3.903 7 H 0.035 0.965 8 C -0.148 4.148 9 C -0.121 4.121 10 C -0.143 4.143 11 C 0.220 3.780 12 H 0.010 0.990 13 C -0.525 4.525 14 H 0.061 0.939 15 C 0.079 3.921 16 N -0.858 5.858 17 Si 0.888 3.112 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.274 1.274 21 O -0.346 6.346 22 H 0.047 0.953 23 H 0.045 0.955 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.085 0.915 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.407 6.819 -4.628 9.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.145 4.145 3 C -0.051 4.051 4 C -0.193 4.193 5 C -0.199 4.199 6 C 0.038 3.962 7 H 0.053 0.947 8 C -0.186 4.186 9 C -0.158 4.158 10 C -0.181 4.181 11 C 0.165 3.835 12 H 0.028 0.972 13 C -0.563 4.563 14 H 0.080 0.920 15 C -0.126 4.126 16 N -0.494 5.494 17 Si 0.716 3.284 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 O -0.265 6.265 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.615 6.572 -4.542 9.765 hybrid contribution 0.434 -0.386 0.546 0.797 sum -5.181 6.186 -3.996 9.005 Atomic orbital electron populations 1.21904 0.97387 1.00640 1.00971 1.21440 0.93835 0.95712 1.03470 1.20436 0.94231 0.95651 0.94757 1.21854 0.99158 0.99610 0.98631 1.21957 1.00518 0.99953 0.97512 1.21746 0.92280 0.90744 0.91458 0.94699 1.22306 0.96037 0.99199 1.01048 1.21617 0.95785 0.99193 0.99234 1.22251 0.99968 0.99713 0.96193 1.19638 0.78315 0.88719 0.96863 0.97212 1.20996 1.33058 0.96699 1.05532 0.92039 1.25035 0.94105 0.97447 0.96053 1.70042 1.33826 1.12483 1.33058 0.86677 0.78950 0.78974 0.83830 1.20550 1.21222 1.19866 1.88319 1.24069 1.75421 1.38709 0.93444 0.93588 0.92899 0.92905 0.89667 0.93451 0.93739 0.91362 0.93145 0.92693 0.92921 0.91629 0.92739 0.93475 0.92954 0.92665 0.92783 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.21 37.16 0.34 -1.92 16 2 C -0.11 -1.97 4.84 -26.73 -0.13 -2.10 16 3 C -0.05 -0.88 0.41 -154.51 -0.06 -0.95 16 4 C -0.14 -2.29 7.62 37.16 0.28 -2.01 16 5 C -0.14 -2.03 7.77 37.15 0.29 -1.74 16 6 C 0.10 1.98 1.91 -26.68 -0.05 1.93 16 7 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 8 C -0.15 -2.64 4.70 -26.59 -0.12 -2.77 16 9 C -0.12 -2.21 6.03 -26.55 -0.16 -2.37 16 10 C -0.14 -3.11 5.36 -26.59 -0.14 -3.25 16 11 C 0.22 5.72 2.50 -27.84 -0.07 5.65 16 12 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 13 C -0.53 -14.84 8.79 -34.44 -0.30 -15.14 16 14 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 15 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 16 N -0.86 -25.03 12.84 55.43 0.71 -24.32 16 17 Si 0.89 21.46 29.54 -169.99 -5.02 16.43 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 O -0.35 -8.71 8.09 -35.23 -0.29 -9.00 16 22 H 0.05 0.62 6.43 -51.93 -0.33 0.29 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.76 6.43 -51.93 -0.33 0.43 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.08 1.90 7.68 -51.93 -0.40 1.50 16 27 H 0.05 0.75 6.38 -51.92 -0.33 0.42 16 28 H 0.04 0.66 6.43 -51.93 -0.33 0.32 16 29 H 0.07 1.34 7.68 -51.93 -0.40 0.94 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.71 6.43 -51.93 -0.33 0.37 16 32 H 0.05 0.70 6.49 -51.93 -0.34 0.37 16 33 H 0.07 1.18 6.31 -51.93 -0.33 0.85 16 34 H 0.05 0.85 6.57 -51.93 -0.34 0.50 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 292.48 15.07 4.41 4.41 Total: -1.00 -28.87 292.48 -7.23 -36.10 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -6.82 Total: -1.11 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -0.22 Total: -22.51 kcal Atomic # 7 Polarization: -25.03 SS G_CDS: 0.71 Total: -24.32 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.29 Total: -9.00 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.87 -7.23 -36.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306782185.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.730 kcal (2) G-P(sol) polarization free energy of solvation -28.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds