Wall clock time and date at job start Mon Mar 30 2020 03:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46929 * 2 1 4 4 C 1.52997 * 109.46918 * 60.00150 * 3 2 1 5 5 C 1.52994 * 109.46897 * 299.99890 * 3 2 1 6 6 C 1.53001 * 109.46929 * 179.97438 * 3 2 1 7 7 H 1.08992 * 109.48192 * 59.97672 * 6 3 2 8 8 C 1.53096 * 109.48000 * 180.02562 * 6 3 2 9 9 C 1.53178 * 109.16278 * 177.60185 * 8 6 3 10 10 C 1.53178 * 109.03511 * 303.01594 * 9 8 6 11 11 C 1.53093 * 109.16255 * 56.98447 * 10 9 8 12 12 H 1.09002 * 109.48198 * 62.37219 * 11 10 9 13 13 C 1.50700 * 109.47903 * 182.39629 * 11 10 9 14 14 H 1.07997 * 119.99922 * 359.97151 * 13 11 10 15 15 C 1.37882 * 119.99816 * 179.97438 * 13 11 10 16 16 N 1.31517 * 119.99969 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99922 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46705 * 90.00299 * 17 15 13 19 19 H 1.48498 * 109.47100 * 210.00046 * 17 15 13 20 20 H 1.48500 * 109.47235 * 330.00244 * 17 15 13 21 21 O 1.42904 * 109.42351 * 302.38111 * 11 10 9 22 22 H 1.08999 * 109.47014 * 60.00235 * 1 2 3 23 23 H 1.09006 * 109.46948 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47081 * 299.99801 * 1 2 3 25 25 H 1.09002 * 109.47310 * 239.99691 * 2 1 3 26 26 H 1.08999 * 109.47014 * 119.99765 * 2 1 3 27 27 H 1.09011 * 109.47099 * 180.02562 * 4 3 2 28 28 H 1.09004 * 109.47072 * 299.99618 * 4 3 2 29 29 H 1.08999 * 109.47592 * 59.99888 * 4 3 2 30 30 H 1.09002 * 109.47455 * 299.99482 * 5 3 2 31 31 H 1.08996 * 109.47470 * 60.00488 * 5 3 2 32 32 H 1.09002 * 109.46834 * 180.02562 * 5 3 2 33 33 H 1.08999 * 109.52155 * 57.69394 * 8 6 3 34 34 H 1.09004 * 109.51758 * 297.50939 * 8 6 3 35 35 H 1.09002 * 109.54068 * 183.15004 * 9 8 6 36 36 H 1.08996 * 109.54450 * 62.88578 * 9 8 6 37 37 H 1.09000 * 109.52619 * 297.07706 * 10 9 8 38 38 H 1.08997 * 109.57176 * 176.91900 * 10 9 8 39 39 H 0.97003 * 119.99695 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5300 2.1637 -1.2492 6 6 3.5700 1.4425 0.0006 7 1 3.9339 0.9283 -0.8888 8 6 4.0805 2.8859 0.0013 9 6 5.6111 2.8778 0.0625 10 6 6.0573 2.1028 1.3062 11 6 5.4704 0.6898 1.2551 12 1 5.8592 0.1660 0.3818 13 6 5.8564 -0.0601 2.5040 14 1 6.4601 0.4222 3.2585 15 6 5.4388 -1.3618 2.6833 16 7 4.7041 -1.9493 1.7642 17 14 5.9179 -2.2916 4.2311 18 1 4.8847 -2.0784 5.2762 19 1 6.0213 -3.7412 3.9257 20 1 7.2283 -1.7943 4.7217 21 8 4.0463 0.7695 1.1682 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.8929 3.1916 1.2491 28 1 0.4399 2.1637 1.2492 29 1 1.8933 1.6499 2.1393 30 1 1.8934 1.6499 -2.1392 31 1 0.4400 2.1637 -1.2492 32 1 1.8937 3.1913 -1.2494 33 1 3.6840 3.4121 0.8696 34 1 3.7550 3.3877 -0.9099 35 1 5.9791 3.9022 0.1197 36 1 6.0091 2.3953 -0.8301 37 1 5.7007 2.6132 2.2008 38 1 7.1454 2.0447 1.3292 39 1 4.4107 -2.8652 1.8902 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306782185.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:51 Heat of formation + Delta-G solvation = -94.967632 kcal Electronic energy + Delta-G solvation = -17222.879095 eV Core-core repulsion = 14742.617693 eV Total energy + Delta-G solvation = -2480.261401 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.54313 -37.70359 -34.72986 -34.02400 -32.15988 -30.11310 -28.12635 -27.27947 -25.98841 -24.27050 -22.92844 -20.83637 -19.34919 -18.57366 -16.84167 -16.62914 -16.25206 -15.77558 -15.45263 -15.17571 -14.87916 -14.39320 -14.00151 -13.62646 -13.46463 -13.06313 -12.91279 -12.85679 -12.71606 -12.68813 -12.37860 -12.24351 -11.95575 -11.87679 -11.64247 -11.62963 -11.30306 -11.13921 -10.85446 -10.78872 -10.43180 -9.58343 -8.12032 -6.31952 1.39205 1.40756 1.50790 2.40805 3.05366 3.62393 3.82975 4.02318 4.14793 4.23551 4.27780 4.34415 4.49853 4.54970 4.64619 4.71297 4.74010 4.82948 4.89103 4.94273 5.02377 5.07890 5.13063 5.15934 5.19943 5.23368 5.28932 5.32615 5.34881 5.44342 5.46766 5.56232 5.73862 5.79121 5.80715 6.25920 6.70647 7.30881 7.45064 8.95046 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025073 B = 0.010442 C = 0.008040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.491122 B = 2680.949173 C = 3481.668165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 C -0.051 4.051 4 C -0.129 4.129 5 C -0.135 4.135 6 C 0.086 3.914 7 H 0.011 0.989 8 C -0.141 4.141 9 C -0.117 4.117 10 C -0.137 4.137 11 C 0.218 3.782 12 H -0.030 1.030 13 C -0.552 4.552 14 H 0.061 0.939 15 C 0.028 3.972 16 N -0.891 5.891 17 Si 0.957 3.043 18 H -0.276 1.276 19 H -0.280 1.280 20 H -0.263 1.263 21 O -0.372 6.372 22 H 0.074 0.926 23 H 0.048 0.952 24 H 0.059 0.941 25 H 0.038 0.962 26 H 0.032 0.968 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.028 0.972 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.464 8.722 -4.959 11.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.142 4.142 3 C -0.051 4.051 4 C -0.186 4.186 5 C -0.192 4.192 6 C 0.027 3.973 7 H 0.029 0.971 8 C -0.178 4.178 9 C -0.155 4.155 10 C -0.175 4.175 11 C 0.162 3.838 12 H -0.012 1.012 13 C -0.590 4.590 14 H 0.079 0.921 15 C -0.175 4.175 16 N -0.528 5.528 17 Si 0.781 3.219 18 H -0.202 1.202 19 H -0.206 1.206 20 H -0.188 1.188 21 O -0.291 6.291 22 H 0.092 0.908 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.667 8.488 -4.876 11.843 hybrid contribution 0.767 -0.999 0.605 1.397 sum -5.900 7.489 -4.271 10.447 Atomic orbital electron populations 1.21830 0.94137 1.01476 1.02521 1.21348 0.96650 0.96065 1.00170 1.20493 0.92029 0.95435 0.97108 1.21788 1.00708 0.99635 0.96435 1.21906 1.01900 1.00189 0.95193 1.22063 0.94502 0.91941 0.88758 0.97062 1.22250 0.95537 0.97141 1.02858 1.21613 0.96299 1.00419 0.97135 1.22105 0.99885 0.97450 0.98035 1.19466 0.79223 0.90806 0.94332 1.01236 1.21412 1.33511 0.97685 1.06352 0.92107 1.25876 0.93991 0.98397 0.99261 1.70185 1.34892 1.12709 1.34997 0.85602 0.78922 0.77640 0.79706 1.20209 1.20579 1.18771 1.88233 1.23224 1.76794 1.40848 0.90755 0.93315 0.92238 0.94324 0.94912 0.91940 0.91164 0.95248 0.93108 0.90410 0.91212 0.91256 0.89316 0.90001 0.93088 0.92992 0.92493 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 9.21 71.98 0.66 -3.35 16 2 C -0.10 -3.92 4.84 30.60 0.15 -3.78 16 3 C -0.05 -1.72 0.41 -52.18 -0.02 -1.74 16 4 C -0.13 -4.16 7.62 71.98 0.55 -3.61 16 5 C -0.13 -3.40 7.77 71.98 0.56 -2.84 16 6 C 0.09 3.54 1.91 30.63 0.06 3.60 16 7 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 8 C -0.14 -4.71 4.70 30.69 0.14 -4.56 16 9 C -0.12 -4.09 6.03 30.71 0.19 -3.91 16 10 C -0.14 -5.96 5.36 30.68 0.16 -5.80 16 11 C 0.22 11.81 2.50 29.88 0.07 11.88 16 12 H -0.03 -1.80 8.14 -2.39 -0.02 -1.82 16 13 C -0.55 -32.34 8.79 25.60 0.23 -32.12 16 14 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 15 C 0.03 1.60 5.40 84.66 0.46 2.06 16 16 N -0.89 -54.45 12.84 21.45 0.28 -54.18 16 17 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 21 O -0.37 -19.54 8.09 -148.98 -1.21 -20.74 16 22 H 0.07 1.70 6.43 -2.39 -0.02 1.69 16 23 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 24 H 0.06 1.59 6.43 -2.39 -0.02 1.57 16 25 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.03 1.54 7.68 -2.39 -0.02 1.53 16 27 H 0.06 1.81 6.38 -2.38 -0.02 1.80 16 28 H 0.07 1.88 6.43 -2.38 -0.02 1.87 16 29 H 0.03 1.15 7.68 -2.39 -0.02 1.14 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.63 6.43 -2.39 -0.02 1.62 16 32 H 0.07 1.54 6.49 -2.39 -0.02 1.52 16 33 H 0.07 2.30 6.31 -2.39 -0.02 2.28 16 34 H 0.09 2.40 6.57 -2.39 -0.02 2.38 16 35 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -66.18 292.48 5.30 -60.88 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.99 Total: 11.03 kcal Atomic # 6 Polarization: -47.36 SS G_CDS: 3.21 Total: -44.15 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.28 Total: -54.18 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -1.21 Total: -20.74 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -66.18 5.30 -60.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306782185.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.088 kcal (2) G-P(sol) polarization free energy of solvation -66.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds