Wall clock time and date at job start Mon Mar 30 2020 03:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47097 * 2 1 4 4 C 1.52992 * 109.47038 * 239.99658 * 2 1 3 5 5 C 1.53001 * 109.47002 * 119.99899 * 2 1 3 6 6 C 1.52997 * 109.47326 * 68.41122 * 5 2 1 7 7 C 1.53000 * 109.86787 * 305.77869 * 6 5 2 8 8 C 1.54106 * 109.87574 * 184.77836 * 6 5 2 9 9 C 1.54817 * 104.18368 * 238.54417 * 8 6 5 10 10 C 1.55002 * 102.09024 * 339.11784 * 9 8 6 11 11 H 1.08998 * 110.61999 * 278.36313 * 10 9 8 12 12 C 1.50704 * 110.61217 * 155.52387 * 10 9 8 13 13 H 1.08003 * 120.00419 * 0.02562 * 12 10 9 14 14 C 1.37878 * 119.99759 * 179.97438 * 12 10 9 15 15 N 1.31517 * 119.99750 * 0.02562 * 14 12 10 16 16 Si 1.86794 * 120.00234 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47168 * 90.00253 * 16 14 12 18 18 H 1.48503 * 109.47365 * 210.00101 * 16 14 12 19 19 H 1.48497 * 109.47163 * 330.00320 * 16 14 12 20 20 O 1.43742 * 109.88184 * 66.94305 * 6 5 2 21 21 H 1.09006 * 109.46930 * 281.43297 * 1 2 3 22 22 H 1.08995 * 109.47367 * 41.43499 * 1 2 3 23 23 H 1.08997 * 109.46958 * 161.43710 * 1 2 3 24 24 H 1.09000 * 109.47346 * 180.02562 * 3 2 1 25 25 H 1.09007 * 109.46572 * 299.99882 * 3 2 1 26 26 H 1.08993 * 109.47631 * 59.99685 * 3 2 1 27 27 H 1.09002 * 109.47218 * 309.95032 * 4 2 1 28 28 H 1.09006 * 109.47383 * 69.95234 * 4 2 1 29 29 H 1.09002 * 109.47241 * 189.94630 * 4 2 1 30 30 H 1.09002 * 109.47200 * 308.40768 * 5 2 1 31 31 H 1.09001 * 109.47275 * 188.41269 * 5 2 1 32 32 H 1.09003 * 109.46847 * 92.02087 * 7 6 5 33 33 H 1.08998 * 109.47188 * 212.02128 * 7 6 5 34 34 H 1.08998 * 109.47229 * 332.02015 * 7 6 5 35 35 H 1.08996 * 110.49070 * 357.21825 * 8 6 5 36 36 H 1.08999 * 110.48449 * 119.73795 * 8 6 5 37 37 H 1.08996 * 110.90690 * 97.31830 * 9 8 6 38 38 H 1.09005 * 110.90238 * 220.92594 * 9 8 6 39 39 H 0.96999 * 119.99894 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0400 -0.7212 1.2493 6 6 1.7096 -2.2117 1.1483 7 6 0.2122 -2.3963 0.8939 8 6 2.1115 -2.9270 2.4528 9 6 3.1212 -4.0084 1.9969 10 6 2.7797 -4.1577 0.4924 11 1 1.9186 -4.8121 0.3573 12 6 3.9680 -4.6823 -0.2718 13 1 4.8912 -4.8970 0.2460 14 6 3.8762 -4.8893 -1.6318 15 7 2.7519 -4.6284 -2.2623 16 14 5.3488 -5.5403 -2.5790 17 1 5.3063 -7.0245 -2.6012 18 1 5.3103 -5.0231 -3.9706 19 1 6.6004 -5.0907 -1.9183 20 8 2.4668 -2.8092 0.0826 21 1 -0.3633 0.2037 1.0073 22 1 -0.3634 0.7704 -0.6800 23 1 -0.3633 -0.9742 -0.3271 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8901 26 1 1.6767 1.9564 0.8899 27 1 1.5389 -1.6848 -1.3423 28 1 1.8289 -0.1153 -2.1303 29 1 3.1154 -0.8776 -1.1649 30 1 1.5592 -0.3015 2.1329 31 1 3.1196 -0.5929 1.3277 32 1 0.0294 -2.4448 -0.1796 33 1 -0.1245 -3.3213 1.3620 34 1 -0.3349 -1.5544 1.3180 35 1 2.5864 -2.2275 3.1408 36 1 1.2406 -3.3876 2.9192 37 1 4.1467 -3.6643 2.1309 38 1 2.9540 -4.9453 2.5285 39 1 2.6874 -4.7737 -3.2191 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306946701.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:38 Heat of formation + Delta-G solvation = -53.524902 kcal Electronic energy + Delta-G solvation = -17383.078792 eV Core-core repulsion = 14904.614483 eV Total energy + Delta-G solvation = -2478.464310 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.34083 -36.35685 -32.68035 -31.12943 -30.34944 -28.05166 -26.43271 -26.20125 -25.61352 -22.94375 -20.14970 -19.17573 -18.25883 -16.45052 -15.10467 -14.70640 -14.53133 -14.26842 -13.78060 -13.41208 -13.02672 -12.69072 -12.48073 -11.93976 -11.73194 -11.59069 -11.51415 -11.04996 -10.93021 -10.83109 -10.76132 -10.67177 -10.49609 -10.14821 -9.96770 -9.91160 -9.81605 -9.49715 -9.12692 -8.96684 -8.51254 -7.89415 -5.97846 -4.08585 3.32393 3.39480 3.42895 4.45362 5.02841 5.22701 5.31183 5.38460 5.51726 5.66681 5.71539 5.87907 5.95945 5.99144 6.07861 6.13733 6.14647 6.24484 6.28245 6.35759 6.40242 6.49270 6.53107 6.67531 6.73597 6.74399 6.78424 6.86067 6.94894 6.98202 7.09201 7.14034 7.58345 7.64749 7.93563 8.33393 8.71170 9.04813 9.61111 11.09903 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.029191 B = 0.009690 C = 0.008391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.985941 B = 2888.875509 C = 3336.258871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.065 4.065 3 C -0.138 4.138 4 C -0.129 4.129 5 C -0.094 4.094 6 C 0.094 3.906 7 C -0.169 4.169 8 C -0.147 4.147 9 C -0.147 4.147 10 C 0.205 3.795 11 H 0.025 0.975 12 C -0.526 4.526 13 H 0.060 0.940 14 C 0.078 3.922 15 N -0.863 5.863 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 O -0.334 6.334 21 H 0.046 0.954 22 H 0.039 0.961 23 H 0.082 0.918 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.088 0.912 28 H 0.026 0.974 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.928 7.488 5.667 10.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.065 4.065 3 C -0.195 4.195 4 C -0.186 4.186 5 C -0.131 4.131 6 C 0.053 3.947 7 C -0.226 4.226 8 C -0.185 4.185 9 C -0.185 4.185 10 C 0.150 3.850 11 H 0.043 0.957 12 C -0.564 4.564 13 H 0.078 0.922 14 C -0.127 4.127 15 N -0.500 5.500 16 Si 0.716 3.284 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 O -0.253 6.253 21 H 0.065 0.935 22 H 0.058 0.942 23 H 0.100 0.900 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.107 0.893 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.963 7.593 5.295 10.069 hybrid contribution 0.732 -0.384 -0.285 0.874 sum -3.231 7.209 5.010 9.355 Atomic orbital electron populations 1.22646 0.95776 1.02940 1.00188 1.20471 0.94885 0.94254 0.96846 1.21891 1.00797 0.96322 1.00511 1.21894 1.02609 1.00603 0.93514 1.21811 1.00818 0.94241 0.96240 1.21809 0.91653 0.92567 0.88647 1.22995 0.96945 1.00356 1.02328 1.23058 0.99289 0.98471 0.97640 1.23191 0.98267 0.96702 1.00370 1.20623 0.95133 0.82038 0.87196 0.95704 1.20994 0.98436 1.43690 0.93240 0.92155 1.25029 0.95600 0.94273 0.97791 1.70015 1.24953 1.46018 1.09017 0.86669 0.83411 0.78943 0.79356 1.20669 1.21151 1.19851 1.89396 1.71215 1.27907 1.36814 0.93493 0.94230 0.89984 0.93015 0.93308 0.93649 0.89312 0.95522 0.92408 0.92688 0.91970 0.90917 0.94069 0.92025 0.92482 0.92285 0.92048 0.92713 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 6.97 37.16 0.26 -2.08 16 2 C -0.06 -1.06 0.77 -154.51 -0.12 -1.18 16 3 C -0.14 -1.96 8.37 37.16 0.31 -1.65 16 4 C -0.13 -2.55 6.97 37.15 0.26 -2.29 16 5 C -0.09 -1.60 3.57 -26.73 -0.10 -1.70 16 6 C 0.09 1.83 0.72 -90.04 -0.06 1.76 16 7 C -0.17 -3.01 7.13 37.16 0.26 -2.74 16 8 C -0.15 -2.69 6.23 -25.20 -0.16 -2.85 16 9 C -0.15 -3.13 6.55 -24.72 -0.16 -3.29 16 10 C 0.21 5.26 3.04 -26.82 -0.08 5.18 16 11 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 12 C -0.53 -14.75 8.81 -34.44 -0.30 -15.06 16 13 H 0.06 1.66 7.77 -52.48 -0.41 1.26 16 14 C 0.08 2.21 5.44 -17.82 -0.10 2.11 16 15 N -0.86 -25.12 13.13 55.43 0.73 -24.39 16 16 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 O -0.33 -8.13 6.72 -35.23 -0.24 -8.37 16 21 H 0.05 0.63 6.99 -51.93 -0.36 0.26 16 22 H 0.04 0.54 8.00 -51.93 -0.42 0.12 16 23 H 0.08 1.29 4.19 -51.93 -0.22 1.08 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.65 8.13 -51.93 -0.42 0.23 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 2.02 4.93 -51.93 -0.26 1.76 16 28 H 0.03 0.48 8.11 -51.93 -0.42 0.06 16 29 H 0.06 1.27 7.74 -51.93 -0.40 0.86 16 30 H 0.05 0.83 7.96 -51.93 -0.41 0.41 16 31 H 0.06 1.13 8.13 -51.93 -0.42 0.70 16 32 H 0.07 1.41 5.41 -51.93 -0.28 1.13 16 33 H 0.04 0.72 7.41 -51.93 -0.39 0.34 16 34 H 0.06 0.93 5.14 -51.93 -0.27 0.66 16 35 H 0.06 0.94 7.70 -51.93 -0.40 0.54 16 36 H 0.06 0.99 7.31 -51.93 -0.38 0.61 16 37 H 0.06 1.32 8.04 -51.93 -0.42 0.90 16 38 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 289.11 15.07 4.36 4.36 Total: -1.00 -28.58 289.11 -6.86 -35.44 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.70 Total: 0.31 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: 0.01 Total: -23.79 kcal Atomic # 7 Polarization: -25.12 SS G_CDS: 0.73 Total: -24.39 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.24 Total: -8.37 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.58 -6.86 -35.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306946701.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.087 kcal (2) G-P(sol) polarization free energy of solvation -28.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds