Wall clock time and date at job start Mon Mar 30 2020 03:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47170 * 54.99895 * 4 3 2 6 6 C 1.53005 * 109.46867 * 294.99684 * 4 3 2 7 7 C 1.53002 * 109.46776 * 174.99999 * 4 3 2 8 8 H 1.08999 * 110.55362 * 59.29961 * 7 4 3 9 9 C 1.54999 * 110.61407 * 182.17430 * 7 4 3 10 10 C 1.54823 * 102.08901 * 155.52617 * 9 7 4 11 11 C 1.54103 * 104.18527 * 339.11943 * 10 9 7 12 12 C 1.52997 * 109.87508 * 238.39702 * 11 10 9 13 13 C 1.50704 * 109.87627 * 117.39673 * 11 10 9 14 14 H 1.07995 * 119.99818 * 359.97438 * 13 11 10 15 15 C 1.37878 * 119.99651 * 179.97438 * 13 11 10 16 16 N 1.31514 * 120.00027 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99885 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46879 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47459 * 119.99775 * 17 15 13 20 20 H 1.48503 * 109.47248 * 240.00082 * 17 15 13 21 21 O 1.43889 * 107.37768 * 358.10242 * 11 10 9 22 22 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 23 23 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 24 24 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 26 26 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 27 27 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 28 28 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 29 29 H 1.09000 * 109.47443 * 300.00098 * 6 4 3 30 30 H 1.09001 * 109.47099 * 60.00379 * 6 4 3 31 31 H 1.09004 * 109.46908 * 180.02562 * 6 4 3 32 32 H 1.09000 * 110.90841 * 273.71591 * 9 7 4 33 33 H 1.09001 * 110.91012 * 37.29534 * 9 7 4 34 34 H 1.08999 * 110.48819 * 97.79735 * 10 9 7 35 35 H 1.08997 * 110.48085 * 220.44500 * 10 9 7 36 36 H 1.09001 * 109.47460 * 60.00256 * 12 11 10 37 37 H 1.09004 * 109.46852 * 180.02562 * 12 11 10 38 38 H 1.09003 * 109.47452 * 300.00348 * 12 11 10 39 39 H 0.97005 * 119.99656 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9329 0.8530 -0.8426 6 6 4.0805 0.8325 1.3065 7 6 4.0800 2.8794 -0.1264 8 1 3.7166 3.4882 0.7015 9 6 5.6287 2.9057 -0.1846 10 6 5.9027 4.2384 -0.9233 11 6 4.5830 4.5406 -1.6593 12 6 4.8398 4.6514 -3.1635 13 6 3.9923 5.8279 -1.1443 14 1 4.4996 6.3827 -0.3690 15 6 2.8042 6.2972 -1.6631 16 7 2.1861 5.6213 -2.6068 17 14 2.0716 7.8924 -1.0243 18 1 2.9533 8.4548 0.0300 19 1 1.9522 8.8644 -2.1407 20 1 0.7266 7.6260 -0.4539 21 8 3.6821 3.4512 -1.3910 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.7175 1.4219 2.1485 30 1 3.7171 -0.1912 1.3961 31 1 5.1705 0.8328 1.3062 32 1 6.0554 2.9221 0.8183 33 1 6.0110 2.0588 -0.7544 34 1 6.1316 5.0300 -0.2098 35 1 6.7184 4.1185 -1.6363 36 1 5.2501 3.7113 -3.5322 37 1 3.9026 4.8655 -3.6772 38 1 5.5497 5.4566 -3.3526 39 1 1.3504 5.9517 -2.9720 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308641230.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:42 Heat of formation + Delta-G solvation = -77.924155 kcal Electronic energy + Delta-G solvation = -16841.389148 eV Core-core repulsion = 14361.866807 eV Total energy + Delta-G solvation = -2479.522341 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.59285 -35.96099 -32.96491 -31.73859 -30.84108 -28.95119 -26.21051 -25.18939 -24.54478 -22.04908 -20.35298 -19.40434 -19.10164 -16.40384 -15.43946 -14.79709 -14.45873 -14.40902 -13.76990 -13.44249 -12.80497 -12.48389 -12.35410 -12.09703 -11.91178 -11.66185 -11.30269 -11.12424 -11.04262 -10.87157 -10.84314 -10.60645 -10.43315 -10.34701 -10.17185 -9.96938 -9.86031 -9.45947 -9.21047 -9.06533 -8.42333 -7.79278 -5.88233 -4.05024 3.31268 3.39692 3.42939 4.46335 5.01231 5.11579 5.29573 5.39898 5.46401 5.64373 5.65141 5.77382 5.85773 5.88199 6.02217 6.07874 6.14075 6.19723 6.27540 6.35350 6.39404 6.44026 6.51233 6.60779 6.69724 6.76735 6.81634 6.90752 7.00012 7.03573 7.11229 7.19300 7.55167 7.84903 8.13339 8.43281 8.71022 9.06451 9.66502 11.12725 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022705 B = 0.009454 C = 0.007736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.904982 B = 2961.115214 C = 3618.484447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.111 4.111 4 C -0.082 4.082 5 H 0.067 0.933 6 C -0.144 4.144 7 C 0.088 3.912 8 H 0.054 0.946 9 C -0.148 4.148 10 C -0.143 4.143 11 C 0.224 3.776 12 C -0.130 4.130 13 C -0.539 4.539 14 H 0.054 0.946 15 C 0.081 3.919 16 N -0.860 5.860 17 Si 0.883 3.117 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.284 1.284 21 O -0.350 6.350 22 H 0.050 0.950 23 H 0.055 0.945 24 H 0.046 0.954 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.013 0.987 37 H 0.090 0.910 38 H 0.036 0.964 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.616 -8.629 4.903 10.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.148 4.148 4 C -0.101 4.101 5 H 0.086 0.914 6 C -0.202 4.202 7 C 0.029 3.971 8 H 0.072 0.928 9 C -0.186 4.186 10 C -0.181 4.181 11 C 0.186 3.814 12 C -0.187 4.187 13 C -0.577 4.577 14 H 0.073 0.927 15 C -0.124 4.124 16 N -0.497 5.497 17 Si 0.711 3.289 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.210 1.210 21 O -0.270 6.270 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.032 0.968 37 H 0.109 0.891 38 H 0.055 0.945 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.284 -8.692 4.638 9.935 hybrid contribution -0.241 1.048 0.529 1.199 sum 1.043 -7.644 5.168 9.286 Atomic orbital electron populations 1.21767 0.96469 1.00696 1.01935 1.21585 0.95370 0.97912 1.01226 1.21559 0.94782 0.95458 1.03002 1.21132 0.95705 0.95897 0.97346 0.91429 1.21844 1.00645 1.00126 0.97551 1.22717 0.91477 0.92242 0.90688 0.92847 1.23102 0.97908 0.98162 0.99433 1.23078 0.99990 0.95928 0.99133 1.19623 0.83748 0.86012 0.91982 1.21778 1.02377 0.96764 0.97819 1.21494 1.07671 1.06603 1.21968 0.92736 1.24972 0.96688 0.96288 0.94404 1.69967 1.16249 1.37472 1.25975 0.86702 0.79234 0.84046 0.78912 1.19866 1.21008 1.21003 1.89028 1.55504 1.48392 1.34064 0.93038 0.92604 0.93491 0.92463 0.92549 0.92664 0.90380 0.92947 0.92854 0.92948 0.92441 0.92250 0.92021 0.93082 0.96820 0.89150 0.94527 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.15 0.37 -1.58 16 2 C -0.12 -1.72 5.69 -26.74 -0.15 -1.87 16 3 C -0.11 -1.90 4.63 -26.73 -0.12 -2.02 16 4 C -0.08 -1.42 2.17 -90.62 -0.20 -1.61 16 5 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 6 C -0.14 -2.01 8.75 37.16 0.33 -1.68 16 7 C 0.09 1.83 2.77 -25.67 -0.07 1.76 16 8 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 9 C -0.15 -2.80 5.56 -24.71 -0.14 -2.94 16 10 C -0.14 -3.09 6.26 -25.19 -0.16 -3.25 16 11 C 0.22 5.71 0.75 -91.20 -0.07 5.64 16 12 C -0.13 -3.24 8.45 37.16 0.31 -2.93 16 13 C -0.54 -14.99 8.18 -34.44 -0.28 -15.27 16 14 H 0.05 1.51 7.33 -52.49 -0.38 1.12 16 15 C 0.08 2.27 5.26 -17.82 -0.09 2.18 16 16 N -0.86 -24.85 10.92 55.43 0.61 -24.24 16 17 Si 0.88 21.44 29.54 -169.99 -5.02 16.42 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 O -0.35 -9.01 9.57 -35.23 -0.34 -9.34 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.71 6.57 -51.93 -0.34 0.37 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.60 7.70 -51.93 -0.40 1.20 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.65 6.57 -51.93 -0.34 0.31 16 31 H 0.05 0.69 7.27 -51.93 -0.38 0.31 16 32 H 0.06 0.96 8.04 -51.93 -0.42 0.54 16 33 H 0.06 1.05 8.06 -51.93 -0.42 0.63 16 34 H 0.06 1.32 7.39 -51.93 -0.38 0.94 16 35 H 0.05 1.02 7.70 -51.93 -0.40 0.62 16 36 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.09 2.49 6.00 -51.93 -0.31 2.18 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 302.11 15.07 4.55 4.55 Total: -1.00 -29.00 302.11 -7.61 -36.62 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.14 Total: -0.42 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: -0.28 Total: -23.58 kcal Atomic # 7 Polarization: -24.85 SS G_CDS: 0.61 Total: -24.24 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.34 Total: -9.34 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.00 -7.61 -36.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308641230.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.309 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds