Wall clock time and date at job start Mon Mar 30 2020 03:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47170 * 54.99895 * 4 3 2 6 6 C 1.53005 * 109.46867 * 294.99684 * 4 3 2 7 7 C 1.53002 * 109.46776 * 174.99999 * 4 3 2 8 8 H 1.08999 * 110.55362 * 59.29961 * 7 4 3 9 9 C 1.54999 * 110.61407 * 182.17430 * 7 4 3 10 10 C 1.54823 * 102.08901 * 155.52617 * 9 7 4 11 11 C 1.54103 * 104.18527 * 339.11943 * 10 9 7 12 12 C 1.52997 * 109.87508 * 238.39702 * 11 10 9 13 13 C 1.50704 * 109.87627 * 117.39673 * 11 10 9 14 14 H 1.07995 * 119.99818 * 359.97438 * 13 11 10 15 15 C 1.37878 * 119.99651 * 179.97438 * 13 11 10 16 16 N 1.31514 * 120.00027 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99885 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46879 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47459 * 119.99775 * 17 15 13 20 20 H 1.48503 * 109.47248 * 240.00082 * 17 15 13 21 21 O 1.43889 * 107.37768 * 358.10242 * 11 10 9 22 22 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 23 23 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 24 24 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 26 26 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 27 27 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 28 28 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 29 29 H 1.09000 * 109.47443 * 300.00098 * 6 4 3 30 30 H 1.09001 * 109.47099 * 60.00379 * 6 4 3 31 31 H 1.09004 * 109.46908 * 180.02562 * 6 4 3 32 32 H 1.09000 * 110.90841 * 273.71591 * 9 7 4 33 33 H 1.09001 * 110.91012 * 37.29534 * 9 7 4 34 34 H 1.08999 * 110.48819 * 97.79735 * 10 9 7 35 35 H 1.08997 * 110.48085 * 220.44500 * 10 9 7 36 36 H 1.09001 * 109.47460 * 60.00256 * 12 11 10 37 37 H 1.09004 * 109.46852 * 180.02562 * 12 11 10 38 38 H 1.09003 * 109.47452 * 300.00348 * 12 11 10 39 39 H 0.97005 * 119.99656 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9329 0.8530 -0.8426 6 6 4.0805 0.8325 1.3065 7 6 4.0800 2.8794 -0.1264 8 1 3.7166 3.4882 0.7015 9 6 5.6287 2.9057 -0.1846 10 6 5.9027 4.2384 -0.9233 11 6 4.5830 4.5406 -1.6593 12 6 4.8398 4.6514 -3.1635 13 6 3.9923 5.8279 -1.1443 14 1 4.4996 6.3827 -0.3690 15 6 2.8042 6.2972 -1.6631 16 7 2.1861 5.6213 -2.6068 17 14 2.0716 7.8924 -1.0243 18 1 2.9533 8.4548 0.0300 19 1 1.9522 8.8644 -2.1407 20 1 0.7266 7.6260 -0.4539 21 8 3.6821 3.4512 -1.3910 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.7175 1.4219 2.1485 30 1 3.7171 -0.1912 1.3961 31 1 5.1705 0.8328 1.3062 32 1 6.0554 2.9221 0.8183 33 1 6.0110 2.0588 -0.7544 34 1 6.1316 5.0300 -0.2098 35 1 6.7184 4.1185 -1.6363 36 1 5.2501 3.7113 -3.5322 37 1 3.9026 4.8655 -3.6772 38 1 5.5497 5.4566 -3.3526 39 1 1.3504 5.9517 -2.9720 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308641230.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:42 Heat of formation + Delta-G solvation = -93.467146 kcal Electronic energy + Delta-G solvation = -16842.063142 eV Core-core repulsion = 14361.866807 eV Total energy + Delta-G solvation = -2480.196335 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.30634 -37.39259 -34.82204 -33.24031 -32.65444 -30.65982 -27.41490 -27.28823 -26.17154 -23.48865 -21.80617 -21.11913 -20.70561 -18.45390 -17.07301 -16.55803 -16.02274 -15.94063 -15.33110 -15.00849 -14.22184 -14.08428 -13.97548 -13.65466 -13.24280 -13.16140 -12.84849 -12.82956 -12.79012 -12.63885 -12.31351 -12.23614 -12.17205 -11.86127 -11.76180 -11.54481 -11.31674 -11.06453 -10.94196 -10.81074 -10.55219 -9.74241 -8.00123 -6.23940 1.36729 1.39077 1.49281 2.42162 3.15097 3.57875 3.79038 4.03187 4.14914 4.26667 4.32851 4.39995 4.46251 4.57437 4.68329 4.75054 4.82490 4.89646 4.96842 4.97802 5.03439 5.08798 5.11220 5.12321 5.18209 5.25148 5.27916 5.33660 5.43401 5.46942 5.53121 5.62567 5.65337 5.76383 6.10479 6.34804 6.72852 7.06865 7.51827 8.99283 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022705 B = 0.009454 C = 0.007736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.904982 B = 2961.115214 C = 3618.484447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.107 4.107 4 C -0.077 4.077 5 H 0.066 0.934 6 C -0.137 4.137 7 C 0.078 3.922 8 H 0.029 0.971 9 C -0.135 4.135 10 C -0.142 4.142 11 C 0.207 3.793 12 C -0.124 4.124 13 C -0.556 4.556 14 H 0.048 0.952 15 C 0.033 3.967 16 N -0.888 5.888 17 Si 0.943 3.057 18 H -0.268 1.268 19 H -0.277 1.277 20 H -0.284 1.284 21 O -0.382 6.382 22 H 0.052 0.948 23 H 0.038 0.962 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.048 0.952 28 H 0.032 0.968 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.028 0.972 37 H 0.059 0.941 38 H 0.042 0.958 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.469 -9.948 6.298 12.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.145 4.145 4 C -0.095 4.095 5 H 0.084 0.916 6 C -0.194 4.194 7 C 0.019 3.981 8 H 0.047 0.953 9 C -0.172 4.172 10 C -0.180 4.180 11 C 0.169 3.831 12 C -0.182 4.182 13 C -0.594 4.594 14 H 0.066 0.934 15 C -0.169 4.169 16 N -0.525 5.525 17 Si 0.769 3.231 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.210 1.210 21 O -0.302 6.302 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.047 0.953 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.148 -10.011 6.040 11.887 hybrid contribution -0.511 1.463 0.089 1.552 sum 1.637 -8.548 6.129 10.645 Atomic orbital electron populations 1.21773 0.95843 1.02041 1.01239 1.21538 0.95948 0.95422 1.02440 1.21491 0.95211 0.97403 1.00402 1.21120 0.95408 0.93589 0.99425 0.91580 1.21798 1.01431 1.01048 0.95101 1.22955 0.93297 0.93726 0.88079 0.95298 1.23052 0.96094 0.97195 1.00904 1.22995 0.98339 0.97322 0.99317 1.19753 0.85535 0.85422 0.92355 1.21681 1.00990 0.97704 0.97814 1.21835 1.07974 1.07846 1.21721 0.93405 1.25689 0.97226 0.99294 0.94694 1.70113 1.16460 1.38927 1.27030 0.85759 0.78243 0.80538 0.78538 1.19257 1.20301 1.21044 1.88982 1.56482 1.48472 1.36222 0.92865 0.94269 0.91077 0.92262 0.90123 0.93301 0.94955 0.92913 0.90468 0.91657 0.89696 0.90509 0.92454 0.91482 0.95279 0.92215 0.93870 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.91 71.98 0.71 -3.00 16 2 C -0.12 -3.03 5.69 30.59 0.17 -2.85 16 3 C -0.11 -3.70 4.63 30.59 0.14 -3.56 16 4 C -0.08 -2.55 2.17 -10.79 -0.02 -2.57 16 5 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 6 C -0.14 -3.36 8.75 71.98 0.63 -2.73 16 7 C 0.08 3.23 2.77 31.28 0.09 3.32 16 8 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 9 C -0.13 -4.79 5.56 31.90 0.18 -4.62 16 10 C -0.14 -5.94 6.26 31.59 0.20 -5.74 16 11 C 0.21 10.65 0.75 -11.17 -0.01 10.64 16 12 C -0.12 -6.28 8.45 71.98 0.61 -5.67 16 13 C -0.56 -31.41 8.18 25.60 0.21 -31.20 16 14 H 0.05 2.68 7.33 -2.91 -0.02 2.66 16 15 C 0.03 1.88 5.26 84.65 0.45 2.32 16 16 N -0.89 -52.89 10.92 21.45 0.23 -52.66 16 17 Si 0.94 44.77 29.54 68.60 2.03 46.79 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 20 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 21 O -0.38 -20.02 9.57 -148.98 -1.43 -21.45 16 22 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 24 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.08 1.74 6.57 -2.39 -0.02 1.72 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.03 1.38 7.70 -2.39 -0.02 1.36 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.55 6.57 -2.39 -0.02 1.53 16 31 H 0.06 1.45 7.27 -2.38 -0.02 1.44 16 32 H 0.08 2.55 8.04 -2.39 -0.02 2.53 16 33 H 0.08 2.47 8.06 -2.39 -0.02 2.45 16 34 H 0.06 2.40 7.39 -2.39 -0.02 2.39 16 35 H 0.07 2.55 7.70 -2.39 -0.02 2.53 16 36 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.06 3.38 6.00 -2.38 -0.01 3.37 16 38 H 0.04 2.03 8.14 -2.39 -0.02 2.02 16 39 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 Total: -1.00 -63.84 302.11 5.17 -58.68 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.98 Total: 14.29 kcal Atomic # 6 Polarization: -49.01 SS G_CDS: 3.35 Total: -45.66 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.23 Total: -52.66 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -1.43 Total: -21.45 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -63.84 5.17 -58.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308641230.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.791 kcal (2) G-P(sol) polarization free energy of solvation -63.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds