Wall clock time and date at job start Mon Mar 30 2020 03:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46922 * 2 1 4 4 C 1.53000 * 109.47240 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47090 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47090 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47240 * 179.97438 * 6 5 4 8 8 H 1.08999 * 110.41887 * 52.69279 * 7 6 5 9 9 C 1.54480 * 110.37228 * 174.99926 * 7 6 5 10 10 C 1.54514 * 104.18308 * 142.74416 * 9 7 6 11 11 C 1.54798 * 103.90974 * 0.10211 * 10 9 7 12 12 H 1.09001 * 110.43256 * 94.78227 * 11 10 9 13 13 C 1.50700 * 110.40031 * 217.06838 * 11 10 9 14 14 H 1.07999 * 120.00206 * 356.85685 * 13 11 10 15 15 C 1.37880 * 119.99921 * 176.85706 * 13 11 10 16 16 N 1.31515 * 120.00054 * 359.97438 * 15 13 11 17 17 Si 1.86795 * 120.00069 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47089 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47559 * 119.99793 * 17 15 13 20 20 H 1.48500 * 109.47098 * 240.00106 * 17 15 13 21 21 O 1.44416 * 104.80351 * 335.91814 * 11 10 9 22 22 H 1.09003 * 109.47272 * 299.99386 * 1 2 3 23 23 H 1.09000 * 109.47391 * 59.99638 * 1 2 3 24 24 H 1.09002 * 109.46622 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46880 * 240.00282 * 2 1 3 26 26 H 1.08994 * 109.47204 * 119.99957 * 2 1 3 27 27 H 1.09003 * 109.46646 * 60.00230 * 3 2 1 28 28 H 1.09000 * 109.47383 * 300.00367 * 3 2 1 29 29 H 1.09000 * 109.46727 * 60.00182 * 4 3 2 30 30 H 1.09002 * 109.46736 * 300.00606 * 4 3 2 31 31 H 1.09000 * 109.47600 * 60.00211 * 5 4 3 32 32 H 1.09000 * 109.47046 * 300.00062 * 5 4 3 33 33 H 1.09003 * 109.47119 * 60.00008 * 6 5 4 34 34 H 1.09000 * 109.47227 * 299.99951 * 6 5 4 35 35 H 1.09002 * 110.51311 * 261.45940 * 9 7 6 36 36 H 1.08994 * 110.50961 * 24.03151 * 9 7 6 37 37 H 1.09004 * 110.50878 * 118.71780 * 10 9 7 38 38 H 1.09004 * 110.51070 * 241.42497 * 10 9 7 39 39 H 0.96999 * 119.99966 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8852 -0.0013 7 6 6.1198 4.3277 -0.0013 8 1 5.6636 4.8923 0.8118 9 6 7.6594 4.3538 0.1237 10 6 8.0931 5.5258 -0.7850 11 6 6.7594 6.0716 -1.3505 12 1 6.4013 6.9037 -0.7443 13 6 6.9344 6.5047 -2.7832 14 1 7.9085 6.4556 -3.2471 15 6 5.8509 6.9637 -3.5019 16 7 4.6647 7.0231 -2.9372 17 14 6.0677 7.5000 -5.2781 18 1 7.4894 7.3365 -5.6745 19 1 5.2094 6.6644 -6.1557 20 1 5.6767 8.9259 -5.4158 21 8 5.8418 4.9593 -1.2699 22 1 -0.3634 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6766 1.9563 0.8901 28 1 1.6766 1.9564 -0.8899 29 1 3.9329 0.9289 -0.8909 30 1 3.9337 0.9285 0.8891 31 1 3.7170 3.3984 0.8904 32 1 3.7161 3.3994 -0.8895 33 1 5.9725 2.3720 -0.8920 34 1 5.9740 2.3707 0.8880 35 1 7.9557 4.5408 1.1558 36 1 8.0873 3.4165 -0.2316 37 1 8.6039 6.2923 -0.2021 38 1 8.7336 5.1675 -1.5910 39 1 3.9024 7.3456 -3.4429 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308644157.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:18 Heat of formation + Delta-G solvation = -92.320917 kcal Electronic energy + Delta-G solvation = -15797.426713 eV Core-core repulsion = 13317.280082 eV Total energy + Delta-G solvation = -2480.146631 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.19626 -36.23923 -33.54355 -32.35192 -30.77280 -29.80854 -27.24384 -24.91022 -22.92892 -21.14669 -20.75161 -20.14787 -19.63681 -16.60060 -15.81599 -15.19873 -14.61731 -14.40208 -14.03503 -13.66710 -13.61900 -13.02581 -12.60900 -12.36190 -12.16437 -11.94361 -11.59163 -11.19560 -11.12237 -10.97029 -10.89937 -10.63226 -10.55128 -10.51977 -10.31260 -10.06780 -9.94567 -9.60885 -9.51851 -9.01901 -8.55728 -7.99408 -5.97425 -4.09483 3.32134 3.39752 3.43626 4.45258 4.80772 4.96775 5.07900 5.13340 5.34745 5.37740 5.48748 5.56664 5.70783 5.73389 5.76323 5.79366 5.91670 5.94992 6.01977 6.05348 6.16260 6.20973 6.27097 6.31244 6.41923 6.46217 6.53242 6.70436 6.75219 6.77784 6.86680 6.97741 6.99072 7.56719 7.92599 8.28443 8.61291 9.02926 9.60604 11.10568 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023470 B = 0.005965 C = 0.004950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.736229 B = 4692.598847 C = 5655.407438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.118 4.118 5 C -0.117 4.117 6 C -0.105 4.105 7 C 0.063 3.937 8 H 0.045 0.955 9 C -0.150 4.150 10 C -0.147 4.147 11 C 0.205 3.795 12 H 0.023 0.977 13 C -0.530 4.530 14 H 0.063 0.937 15 C 0.076 3.924 16 N -0.864 5.864 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 O -0.345 6.345 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.914 -10.573 7.030 13.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.159 4.159 4 C -0.155 4.155 5 C -0.154 4.154 6 C -0.143 4.143 7 C 0.004 3.996 8 H 0.063 0.937 9 C -0.188 4.188 10 C -0.185 4.185 11 C 0.150 3.850 12 H 0.040 0.960 13 C -0.567 4.567 14 H 0.081 0.919 15 C -0.129 4.129 16 N -0.500 5.500 17 Si 0.718 3.282 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 O -0.264 6.264 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.261 -10.586 6.845 13.021 hybrid contribution 0.218 0.357 -0.739 0.849 sum -3.043 -10.229 6.105 12.295 Atomic orbital electron populations 1.21787 0.96231 1.01169 1.01843 1.21546 0.95556 0.97451 1.01676 1.21636 0.95962 0.96104 1.02186 1.21608 0.94902 0.97660 1.01335 1.21535 0.95482 0.95614 1.02773 1.21564 0.95662 0.95919 1.01136 1.22776 0.92842 0.93310 0.90661 0.93665 1.22960 0.97429 0.99385 0.99051 1.23087 1.01081 0.96332 0.98007 1.20547 0.82613 0.85538 0.96347 0.95979 1.21086 0.95069 1.43558 0.96985 0.91860 1.25076 0.95204 0.94420 0.98198 1.70054 0.99349 1.44208 1.36405 0.86571 0.78340 0.78158 0.85101 1.19641 1.20855 1.20921 1.89487 1.60027 1.44728 1.32183 0.92873 0.92714 0.93137 0.92195 0.92375 0.92239 0.91824 0.92267 0.92733 0.92722 0.90611 0.91718 0.92446 0.92654 0.92128 0.92960 0.91907 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.08 16 2 C -0.12 -1.31 5.93 -26.73 -0.16 -1.47 16 3 C -0.12 -1.50 5.21 -26.73 -0.14 -1.64 16 4 C -0.12 -1.58 5.21 -26.73 -0.14 -1.72 16 5 C -0.12 -1.93 5.15 -26.73 -0.14 -2.07 16 6 C -0.11 -1.81 4.84 -26.73 -0.13 -1.94 16 7 C 0.06 1.31 3.25 -25.95 -0.08 1.22 16 8 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 9 C -0.15 -2.83 6.62 -25.16 -0.17 -2.99 16 10 C -0.15 -3.20 6.63 -24.99 -0.17 -3.36 16 11 C 0.21 5.48 3.12 -26.94 -0.08 5.40 16 12 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 13 C -0.53 -15.28 8.78 -34.44 -0.30 -15.58 16 14 H 0.06 1.77 7.60 -52.49 -0.40 1.37 16 15 C 0.08 2.21 5.42 -17.82 -0.10 2.12 16 16 N -0.86 -26.12 12.94 55.43 0.72 -25.40 16 17 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 O -0.35 -9.18 10.35 -35.23 -0.36 -9.54 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.50 8.01 -51.93 -0.42 1.08 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.06 7.87 -51.93 -0.41 0.65 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.37 7.74 -51.93 -0.40 0.96 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 314.03 15.07 4.73 4.73 Total: -1.00 -30.45 314.03 -8.70 -39.15 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -7.52 Total: -2.53 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: -1.24 Total: -23.11 kcal Atomic # 7 Polarization: -26.12 SS G_CDS: 0.72 Total: -25.40 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.36 Total: -9.54 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.45 -8.70 -39.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308644157.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.173 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds