Wall clock time and date at job start Mon Mar 30 2020 03:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47104 * 2 1 4 4 C 1.53002 * 109.46758 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46716 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46716 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.46927 * 180.02562 * 6 5 4 8 8 H 1.09000 * 110.32903 * 304.20161 * 7 6 5 9 9 C 1.54485 * 110.37142 * 181.83496 * 7 6 5 10 10 C 1.54507 * 104.06070 * 217.18662 * 9 7 6 11 11 C 1.54480 * 104.06663 * 359.97438 * 10 9 7 12 12 H 1.08997 * 110.46654 * 265.10532 * 11 10 9 13 13 C 1.50694 * 110.37228 * 142.80965 * 11 10 9 14 14 H 1.08000 * 120.00563 * 3.16730 * 13 11 10 15 15 C 1.37885 * 119.99902 * 183.16894 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 O 1.44420 * 110.37640 * 66.45300 * 7 6 5 22 22 H 1.08995 * 109.47648 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47436 * 300.00499 * 1 2 3 24 24 H 1.09010 * 109.46922 * 59.99981 * 1 2 3 25 25 H 1.08995 * 109.46725 * 239.99687 * 2 1 3 26 26 H 1.09001 * 109.46321 * 120.00034 * 2 1 3 27 27 H 1.09003 * 109.47463 * 59.99916 * 3 2 1 28 28 H 1.08996 * 109.47171 * 299.99868 * 3 2 1 29 29 H 1.09002 * 109.47233 * 60.00356 * 4 3 2 30 30 H 1.08996 * 109.47276 * 299.99931 * 4 3 2 31 31 H 1.09002 * 109.46875 * 60.00264 * 5 4 3 32 32 H 1.08996 * 109.47296 * 300.00046 * 5 4 3 33 33 H 1.08997 * 109.47505 * 59.99798 * 6 5 4 34 34 H 1.09003 * 109.47432 * 299.99748 * 6 5 4 35 35 H 1.08996 * 110.50781 * 335.83369 * 9 7 6 36 36 H 1.09005 * 110.50976 * 98.40533 * 9 7 6 37 37 H 1.09005 * 110.51114 * 241.35797 * 10 9 7 38 38 H 1.08995 * 110.51057 * 118.64527 * 10 9 7 39 39 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6101 2.8848 0.0000 7 6 6.1201 4.3273 0.0000 8 1 5.7047 4.8759 -0.8454 9 6 7.6641 4.3518 -0.0464 10 6 8.0481 5.5419 0.8611 11 6 6.6907 6.0961 1.3479 12 1 6.3638 6.9176 0.7105 13 6 6.7941 6.5535 2.7800 14 1 7.7436 6.5126 3.2928 15 6 5.6762 7.0244 3.4357 16 7 4.5199 7.0747 2.8110 17 14 5.8042 7.5908 5.2111 18 1 5.5464 6.4425 6.1168 19 1 7.1669 8.1242 5.4636 20 1 4.8009 8.6559 5.4643 21 8 5.7778 4.9817 1.2411 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5139 0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9338 0.9284 -0.8892 30 1 3.9330 0.9287 0.8908 31 1 3.7163 3.3992 0.8896 32 1 3.7171 3.3982 -0.8904 33 1 5.9734 2.3706 -0.8897 34 1 5.9734 2.3714 0.8902 35 1 8.0728 3.4221 0.3495 36 1 8.0130 4.5178 -1.0656 37 1 8.5868 6.2987 0.2909 38 1 8.6467 5.2006 1.7056 39 1 3.7335 7.4056 3.2725 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308644158.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:21 Heat of formation + Delta-G solvation = -108.838784 kcal Electronic energy + Delta-G solvation = -15813.103404 eV Core-core repulsion = 13332.240505 eV Total energy + Delta-G solvation = -2480.862900 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.97852 -37.35771 -35.08147 -34.15754 -32.55855 -31.24299 -28.86493 -26.53347 -24.41544 -22.56891 -21.93243 -21.61515 -21.25912 -18.74502 -17.11361 -16.78423 -16.45281 -16.07331 -15.59298 -14.96057 -14.78663 -14.32126 -14.17736 -13.88957 -13.58348 -13.41490 -13.12816 -12.83950 -12.42842 -12.32268 -12.31230 -12.14182 -11.98915 -11.89737 -11.73044 -11.53158 -11.32716 -11.30757 -11.00110 -10.91992 -10.70462 -10.00278 -8.16539 -6.37134 1.39007 1.41130 1.51634 2.39760 3.06299 3.65752 3.72491 4.01817 4.07821 4.12488 4.20643 4.28965 4.32031 4.46154 4.51831 4.58468 4.69630 4.78010 4.81837 4.90978 4.96578 4.97948 5.02342 5.11767 5.14391 5.16809 5.20861 5.30406 5.33883 5.40107 5.46913 5.50777 5.55404 5.61076 5.72981 6.16214 6.55797 6.95209 7.38190 8.92141 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023030 B = 0.006059 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.523456 B = 4620.196551 C = 5605.030673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.122 4.122 4 C -0.109 4.109 5 C -0.113 4.113 6 C -0.098 4.098 7 C 0.049 3.951 8 H 0.041 0.959 9 C -0.138 4.138 10 C -0.141 4.141 11 C 0.195 3.805 12 H -0.013 1.013 13 C -0.555 4.555 14 H 0.065 0.935 15 C 0.021 3.979 16 N -0.904 5.904 17 Si 0.963 3.037 18 H -0.275 1.275 19 H -0.260 1.260 20 H -0.279 1.279 21 O -0.382 6.382 22 H 0.064 0.936 23 H 0.047 0.953 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.030 0.970 32 H 0.056 0.944 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 -12.264 -7.274 14.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.159 4.159 4 C -0.146 4.146 5 C -0.151 4.151 6 C -0.135 4.135 7 C -0.009 4.009 8 H 0.059 0.941 9 C -0.176 4.176 10 C -0.179 4.179 11 C 0.139 3.861 12 H 0.005 0.995 13 C -0.592 4.592 14 H 0.084 0.916 15 C -0.181 4.181 16 N -0.541 5.541 17 Si 0.787 3.213 18 H -0.201 1.201 19 H -0.184 1.184 20 H -0.205 1.205 21 O -0.302 6.302 22 H 0.083 0.917 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.042 -12.273 -7.116 14.333 hybrid contribution -0.093 0.864 0.835 1.205 sum -2.135 -11.409 -6.281 13.198 Atomic orbital electron populations 1.21792 0.95561 1.02058 1.01673 1.21516 0.96174 0.95850 1.02317 1.21628 0.95383 0.97536 1.01386 1.21544 0.95469 0.95317 1.02311 1.21462 0.95474 0.97444 1.00679 1.21564 0.95738 0.93705 1.02505 1.23125 0.94413 0.94625 0.88731 0.94141 1.22922 0.95534 0.98725 1.00386 1.22919 0.98311 0.97787 0.98875 1.20412 0.85259 0.85249 0.95216 0.99530 1.21499 0.95729 1.43353 0.98643 0.91645 1.25994 0.94860 0.94462 1.02758 1.70192 1.00203 1.45212 1.38483 0.85500 0.78516 0.77999 0.79264 1.20113 1.18377 1.20461 1.89415 1.58948 1.43800 1.37999 0.91701 0.93417 0.92601 0.91046 0.92174 0.93772 0.92032 0.90344 0.92482 0.95087 0.92569 0.88565 0.92508 0.90297 0.89332 0.91262 0.92150 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.91 71.98 0.71 -1.99 16 2 C -0.12 -2.34 5.93 30.59 0.18 -2.16 16 3 C -0.12 -2.95 5.21 30.59 0.16 -2.79 16 4 C -0.11 -2.80 5.21 30.60 0.16 -2.64 16 5 C -0.11 -3.77 5.13 30.60 0.16 -3.61 16 6 C -0.10 -3.23 4.85 30.59 0.15 -3.08 16 7 C 0.05 2.02 3.27 31.10 0.10 2.12 16 8 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 9 C -0.14 -4.86 6.63 31.61 0.21 -4.65 16 10 C -0.14 -6.01 6.61 31.61 0.21 -5.81 16 11 C 0.19 10.69 3.11 30.35 0.09 10.78 16 12 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 13 C -0.55 -32.72 8.78 25.60 0.22 -32.50 16 14 H 0.07 3.69 7.59 -2.91 -0.02 3.67 16 15 C 0.02 1.24 5.42 84.66 0.46 1.70 16 16 N -0.90 -56.55 12.94 21.45 0.28 -56.27 16 17 Si 0.96 45.25 29.54 68.60 2.03 47.27 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 21 O -0.38 -20.91 10.22 -148.98 -1.52 -22.43 16 22 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 23 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.03 1.29 7.91 -2.39 -0.02 1.27 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.08 2.50 7.87 -2.39 -0.02 2.48 16 36 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 37 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 38 H 0.06 2.57 7.73 -2.39 -0.02 2.55 16 39 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -67.86 313.78 4.56 -63.30 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.96 Total: 12.74 kcal Atomic # 6 Polarization: -47.44 SS G_CDS: 2.82 Total: -44.62 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 0.28 Total: -56.27 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -1.52 Total: -22.43 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -67.86 4.56 -63.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308644158.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.538 kcal (2) G-P(sol) polarization free energy of solvation -67.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds