Wall clock time and date at job start Mon Mar 30 2020 03:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46978 * 2 1 4 4 C 1.52996 * 109.47220 * 64.99801 * 3 2 1 5 5 C 1.53004 * 109.46864 * 61.46689 * 4 3 2 6 6 C 1.53001 * 109.46807 * 185.00113 * 3 2 1 7 7 H 1.08996 * 110.55296 * 302.08772 * 6 3 2 8 8 C 1.54991 * 110.61697 * 179.20894 * 6 3 2 9 9 C 1.54811 * 102.09287 * 204.47136 * 8 6 3 10 10 C 1.54101 * 104.18609 * 20.88638 * 9 8 6 11 11 C 1.53009 * 109.87321 * 242.60440 * 10 9 8 12 12 C 1.50694 * 109.88108 * 121.60593 * 10 9 8 13 13 H 1.08003 * 120.00371 * 5.38543 * 12 10 9 14 14 C 1.37881 * 119.99733 * 185.39709 * 12 10 9 15 15 N 1.31511 * 120.00364 * 6.35876 * 14 12 10 16 16 Si 1.86803 * 119.99680 * 186.35965 * 14 12 10 17 17 H 1.48499 * 109.47176 * 94.98743 * 16 14 12 18 18 H 1.48504 * 109.46993 * 214.98392 * 16 14 12 19 19 H 1.48497 * 109.47384 * 334.98815 * 16 14 12 20 20 O 1.43742 * 107.29176 * 2.02281 * 10 9 8 21 21 H 1.08997 * 109.46900 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46579 * 300.00251 * 1 2 3 23 23 H 1.08996 * 109.46884 * 60.00393 * 1 2 3 24 24 H 1.08997 * 109.46579 * 239.99749 * 2 1 3 25 25 H 1.08996 * 109.46884 * 119.99607 * 2 1 3 26 26 H 1.09003 * 109.46856 * 304.99890 * 3 2 1 27 27 H 1.09002 * 109.46848 * 181.45967 * 4 3 2 28 28 H 1.08994 * 109.47231 * 301.46780 * 4 3 2 29 29 H 1.08999 * 109.47321 * 299.86187 * 5 4 3 30 30 H 1.09004 * 109.47431 * 59.86362 * 5 4 3 31 31 H 1.09003 * 109.46806 * 179.85976 * 5 4 3 32 32 H 1.09004 * 110.91140 * 86.27595 * 8 6 3 33 33 H 1.09000 * 110.90966 * 322.67072 * 8 6 3 34 34 H 1.08998 * 110.49127 * 262.20564 * 9 8 6 35 35 H 1.09003 * 110.60153 * 139.61313 * 9 8 6 36 36 H 1.08995 * 109.47469 * 54.51186 * 11 10 9 37 37 H 1.09004 * 109.46539 * 174.51183 * 11 10 9 38 38 H 1.09003 * 109.46745 * 294.50639 * 11 10 9 39 39 H 0.96997 * 120.00050 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6353 2.1266 1.3073 5 6 2.2752 1.3916 2.4868 6 6 3.5649 1.4443 -0.1258 7 1 4.0167 0.8777 0.6884 8 6 4.1089 2.8954 -0.1484 9 6 5.4563 2.7251 -0.8914 10 6 5.2986 1.3989 -1.6603 11 6 6.3288 0.3832 -1.1622 12 6 5.4863 1.6369 -3.1364 13 1 5.7829 2.6123 -3.4928 14 6 5.2791 0.6093 -4.0322 15 7 4.7981 -0.5409 -3.6137 16 14 5.6817 0.8511 -5.8402 17 1 7.0492 0.3416 -6.1152 18 1 4.7001 0.1069 -6.6697 19 1 5.6159 2.2968 -6.1730 20 8 3.9701 0.9127 -1.4054 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6054 1.9815 -0.8419 27 1 1.9761 3.1619 1.2963 28 1 0.5504 2.1021 1.4094 29 1 1.9326 0.3569 2.4993 30 1 3.3601 1.4139 2.3835 31 1 1.9888 1.8805 3.4180 32 1 4.2673 3.2674 0.8639 33 1 3.4395 3.5532 -0.7027 34 1 6.2789 2.6578 -0.1794 35 1 5.6193 3.5506 -1.5843 36 1 6.2397 0.2755 -0.0812 37 1 6.1492 -0.5803 -1.6394 38 1 7.3315 0.7307 -1.4113 39 1 4.6527 -1.2638 -4.2438 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308644967.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:43 Heat of formation + Delta-G solvation = -73.073825 kcal Electronic energy + Delta-G solvation = -17062.826760 eV Core-core repulsion = 14583.514745 eV Total energy + Delta-G solvation = -2479.312015 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.82530 -36.19931 -32.61953 -31.26056 -30.53097 -29.53150 -26.75375 -25.21205 -23.56208 -23.13534 -20.51480 -19.25864 -18.43380 -16.59937 -15.54483 -15.02644 -14.44766 -14.27299 -13.52651 -13.12294 -12.80827 -12.67107 -12.50108 -12.35781 -11.87875 -11.59970 -11.49466 -11.30577 -11.03934 -10.82875 -10.80463 -10.48904 -10.38919 -10.27698 -10.19534 -9.88657 -9.79183 -9.44656 -9.31146 -8.91122 -8.43874 -7.82845 -5.89621 -4.02511 3.33490 3.40964 3.43754 4.47800 4.98437 5.17687 5.26936 5.40081 5.58460 5.65417 5.66071 5.74669 5.79512 5.87350 6.03116 6.05857 6.11152 6.18991 6.27856 6.37114 6.38067 6.47394 6.53069 6.57886 6.67598 6.79059 6.80322 6.87964 6.92371 6.99952 7.06663 7.21150 7.31890 7.83873 8.05692 8.43619 8.66948 9.13801 9.66192 11.14747 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031502 B = 0.008766 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.611406 B = 3193.562476 C = 3636.376300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.076 4.076 4 C -0.117 4.117 5 C -0.155 4.155 6 C 0.070 3.930 7 H 0.047 0.953 8 C -0.145 4.145 9 C -0.143 4.143 10 C 0.226 3.774 11 C -0.143 4.143 12 C -0.527 4.527 13 H 0.060 0.940 14 C 0.080 3.920 15 N -0.854 5.854 16 Si 0.884 3.116 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 O -0.330 6.330 21 H 0.046 0.954 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.078 0.922 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.011 0.989 37 H 0.073 0.927 38 H 0.037 0.963 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.870 2.978 8.943 10.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.094 4.094 4 C -0.155 4.155 5 C -0.212 4.212 6 C 0.011 3.989 7 H 0.065 0.935 8 C -0.183 4.183 9 C -0.181 4.181 10 C 0.188 3.812 11 C -0.201 4.201 12 C -0.565 4.565 13 H 0.078 0.922 14 C -0.126 4.126 15 N -0.489 5.489 16 Si 0.712 3.288 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 O -0.249 6.249 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.030 0.970 37 H 0.092 0.908 38 H 0.056 0.944 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.045 2.647 8.743 10.435 hybrid contribution 0.387 0.249 -0.852 0.969 sum -4.658 2.896 7.890 9.609 Atomic orbital electron populations 1.21811 0.96975 1.00764 1.01116 1.21529 0.94511 0.96760 1.02758 1.21109 0.95086 0.96336 0.96908 1.21546 0.99947 0.99247 0.94746 1.21879 1.01396 1.00604 0.97346 1.22927 0.93174 0.92218 0.90535 0.93510 1.23082 0.97967 0.98313 0.98967 1.23071 0.95543 1.01066 0.98384 1.19600 0.80772 0.86784 0.94023 1.22105 0.98555 1.03140 0.96268 1.21075 1.48404 0.96885 0.90122 0.92154 1.25017 0.93870 0.95377 0.98293 1.70079 1.41401 1.03333 1.34105 0.86727 0.78080 0.78255 0.85758 1.20724 1.21233 1.19905 1.89313 1.32770 1.71634 1.31181 0.93467 0.93270 0.93041 0.90376 0.92545 0.91063 0.92276 0.92190 0.92487 0.92371 0.93626 0.92722 0.91759 0.93302 0.91860 0.97026 0.90830 0.94403 0.93312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.67 37.16 0.36 -1.73 16 2 C -0.12 -2.00 5.17 -26.73 -0.14 -2.13 16 3 C -0.08 -1.31 1.96 -90.62 -0.18 -1.49 16 4 C -0.12 -1.62 5.26 -26.73 -0.14 -1.76 16 5 C -0.16 -1.99 9.23 37.16 0.34 -1.65 16 6 C 0.07 1.42 2.30 -25.68 -0.06 1.36 16 7 H 0.05 0.94 6.58 -51.93 -0.34 0.60 16 8 C -0.15 -2.75 5.51 -24.73 -0.14 -2.89 16 9 C -0.14 -3.07 6.26 -25.20 -0.16 -3.23 16 10 C 0.23 5.75 0.74 -91.20 -0.07 5.68 16 11 C -0.14 -3.50 8.38 37.16 0.31 -3.19 16 12 C -0.53 -14.77 8.22 -34.44 -0.28 -15.05 16 13 H 0.06 1.67 7.36 -52.48 -0.39 1.28 16 14 C 0.08 2.26 5.24 -17.82 -0.09 2.16 16 15 N -0.85 -24.87 11.29 55.43 0.63 -24.24 16 16 Si 0.88 21.46 29.54 -169.99 -5.02 16.44 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 O -0.33 -8.50 9.17 -35.23 -0.32 -8.83 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.61 6.53 -51.93 -0.34 0.27 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.08 1.59 7.75 -51.93 -0.40 1.19 16 25 H 0.06 0.90 6.22 -51.93 -0.32 0.58 16 26 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.06 0.80 7.30 -51.93 -0.38 0.42 16 28 H 0.06 0.75 6.50 -51.93 -0.34 0.41 16 29 H 0.06 0.72 6.36 -51.93 -0.33 0.39 16 30 H 0.06 0.80 6.45 -51.93 -0.33 0.46 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 33 H 0.06 1.21 8.06 -51.93 -0.42 0.79 16 34 H 0.05 0.96 7.70 -51.93 -0.40 0.56 16 35 H 0.06 1.36 7.41 -51.93 -0.38 0.98 16 36 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.07 1.98 6.83 -51.93 -0.35 1.63 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 295.52 15.07 4.45 4.45 Total: -1.00 -29.21 295.52 -7.33 -36.54 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -6.82 Total: -0.44 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: -0.24 Total: -23.92 kcal Atomic # 7 Polarization: -24.87 SS G_CDS: 0.63 Total: -24.24 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.32 Total: -8.83 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.21 -7.33 -36.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308644967.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.535 kcal (2) G-P(sol) polarization free energy of solvation -29.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds