Wall clock time and date at job start Mon Mar 30 2020 03:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.46968 * 2 1 4 4 C 1.53000 * 109.47384 * 64.99625 * 3 2 1 5 5 C 1.53004 * 109.46646 * 64.11386 * 4 3 2 6 6 C 1.53000 * 109.47002 * 185.00023 * 3 2 1 7 7 H 1.08997 * 109.48204 * 295.78464 * 6 3 2 8 8 C 1.53089 * 109.49140 * 175.75473 * 6 3 2 9 9 C 1.53176 * 109.16603 * 182.40368 * 8 6 3 10 10 C 1.53170 * 109.03676 * 56.98034 * 9 8 6 11 11 C 1.53093 * 109.16491 * 303.02266 * 10 9 8 12 12 H 1.09000 * 109.49366 * 177.59795 * 11 10 9 13 13 C 1.50706 * 109.48000 * 297.62673 * 11 10 9 14 14 H 1.07996 * 119.99531 * 359.94068 * 13 11 10 15 15 C 1.37874 * 120.00053 * 179.66731 * 13 11 10 16 16 N 1.31518 * 120.00190 * 0.27499 * 15 13 11 17 17 Si 1.86801 * 120.00069 * 180.27100 * 15 13 11 18 18 H 1.48506 * 109.46669 * 90.00090 * 17 15 13 19 19 H 1.48498 * 109.47301 * 209.99699 * 17 15 13 20 20 H 1.48499 * 109.47354 * 330.00425 * 17 15 13 21 21 O 1.42897 * 109.41496 * 57.60734 * 11 10 9 22 22 H 1.08997 * 109.46680 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46725 * 299.99813 * 1 2 3 24 24 H 1.08993 * 109.47102 * 60.00530 * 1 2 3 25 25 H 1.08991 * 109.47021 * 239.99741 * 2 1 3 26 26 H 1.09001 * 109.46988 * 119.99680 * 2 1 3 27 27 H 1.09002 * 109.47265 * 304.99631 * 3 2 1 28 28 H 1.08996 * 109.47306 * 184.10650 * 4 3 2 29 29 H 1.08995 * 109.47222 * 304.11190 * 4 3 2 30 30 H 1.09008 * 109.47072 * 305.72055 * 5 4 3 31 31 H 1.08996 * 109.47339 * 65.72520 * 5 4 3 32 32 H 1.09003 * 109.47150 * 185.73169 * 5 4 3 33 33 H 1.08997 * 109.52438 * 302.31457 * 8 6 3 34 34 H 1.09002 * 109.52054 * 62.49510 * 8 6 3 35 35 H 1.09003 * 109.54285 * 176.85259 * 9 8 6 36 36 H 1.09011 * 109.54225 * 297.11377 * 9 8 6 37 37 H 1.09007 * 109.52425 * 183.11810 * 10 9 8 38 38 H 1.08997 * 109.52543 * 62.92669 * 10 9 8 39 39 H 0.96991 * 120.00389 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 1.3073 5 6 2.3277 1.4323 2.4818 6 6 3.5649 1.4443 -0.1257 7 1 4.0027 0.9711 0.7532 8 6 4.0669 2.8866 -0.2323 9 6 5.5873 2.8775 -0.4181 10 6 5.9341 2.0482 -1.6583 11 6 5.3599 0.6382 -1.4967 12 1 5.5668 0.0561 -2.3948 13 6 5.9976 -0.0307 -0.3063 14 1 6.7388 0.4962 0.2762 15 6 5.6307 -1.3132 0.0424 16 7 4.7281 -1.9548 -0.6671 17 14 6.4156 -2.1395 1.5224 18 1 5.6129 -1.8457 2.7368 19 1 6.4620 -3.6074 1.3030 20 1 7.7957 -1.6222 1.7042 21 8 3.9474 0.7205 -1.2971 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.6055 1.9815 -0.8419 28 1 1.9345 3.1742 1.2770 29 1 0.5544 2.0609 1.4322 30 1 2.1096 0.3647 2.4526 31 1 3.4045 1.5853 2.4107 32 1 1.9620 1.8522 3.4189 33 1 3.5983 3.3732 -1.0877 34 1 3.8145 3.4284 0.6792 35 1 5.9446 3.8987 -0.5507 36 1 6.0593 2.4357 0.4596 37 1 7.0172 1.9902 -1.7667 38 1 5.5032 2.5177 -2.5427 39 1 4.4696 -2.8568 -0.4216 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308647182.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:00 Heat of formation + Delta-G solvation = -81.517506 kcal Electronic energy + Delta-G solvation = -17447.550294 eV Core-core repulsion = 14967.872134 eV Total energy + Delta-G solvation = -2479.678160 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.67720 -35.97090 -32.52505 -32.14758 -30.79956 -29.65259 -26.38284 -25.10511 -23.21724 -22.54611 -21.32232 -18.92380 -18.31865 -16.40935 -15.25138 -14.89759 -14.67946 -14.11317 -13.55963 -13.46608 -12.92487 -12.80571 -12.49140 -12.16203 -12.05134 -11.71369 -11.45655 -11.18599 -10.94650 -10.84723 -10.68587 -10.61810 -10.47948 -10.11180 -10.06868 -9.81545 -9.68377 -9.47750 -9.16376 -8.56534 -8.36910 -7.62669 -5.93456 -4.07468 3.29348 3.37187 3.39791 4.43793 5.11130 5.33745 5.41493 5.46448 5.76387 5.79506 5.83539 5.86115 5.92673 5.96103 6.04847 6.23160 6.24603 6.34815 6.37838 6.46688 6.49825 6.51425 6.57177 6.62624 6.76091 6.79567 6.87129 6.96008 7.07845 7.12020 7.15985 7.34974 7.44730 7.77842 7.93651 8.29297 8.90070 9.20423 9.64096 11.10533 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.020251 B = 0.012964 C = 0.010331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.324502 B = 2159.373375 C = 2709.715145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C -0.077 4.077 4 C -0.116 4.116 5 C -0.156 4.156 6 C 0.109 3.891 7 H 0.067 0.933 8 C -0.144 4.144 9 C -0.108 4.108 10 C -0.142 4.142 11 C 0.213 3.787 12 H 0.057 0.943 13 C -0.555 4.555 14 H 0.054 0.946 15 C 0.082 3.918 16 N -0.856 5.856 17 Si 0.876 3.124 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.275 1.275 21 O -0.369 6.369 22 H 0.045 0.955 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.037 0.963 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.039 0.961 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.133 6.471 2.879 8.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.095 4.095 4 C -0.153 4.153 5 C -0.213 4.213 6 C 0.051 3.949 7 H 0.085 0.915 8 C -0.182 4.182 9 C -0.146 4.146 10 C -0.180 4.180 11 C 0.157 3.843 12 H 0.075 0.925 13 C -0.593 4.593 14 H 0.072 0.928 15 C -0.123 4.123 16 N -0.492 5.492 17 Si 0.704 3.296 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.200 1.200 21 O -0.288 6.288 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.368 6.214 2.716 8.649 hybrid contribution 0.698 -0.356 1.050 1.310 sum -4.671 5.858 3.766 8.385 Atomic orbital electron populations 1.21858 0.97752 1.00533 1.00614 1.21426 0.93223 0.96384 1.03797 1.21119 0.95727 0.96456 0.96220 1.21552 0.99603 0.99058 0.95136 1.21893 1.01411 1.01125 0.96908 1.21597 0.91786 0.89345 0.92194 0.91520 1.22203 0.96522 0.99374 1.00118 1.21432 0.95752 0.97692 0.99711 1.22180 1.00036 0.99689 0.96073 1.19653 0.78761 0.88972 0.96913 0.92513 1.21515 1.24278 0.99480 1.14006 0.92777 1.24964 0.94365 0.97007 0.96000 1.70047 1.29419 1.11750 1.37946 0.86866 0.80017 0.78896 0.83845 1.20600 1.21206 1.19953 1.87868 1.25195 1.73828 1.41875 0.93608 0.93519 0.93506 0.89848 0.92297 0.92213 0.92568 0.92384 0.92248 0.92032 0.93923 0.93117 0.92906 0.94461 0.91534 0.92850 0.94253 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.67 37.16 0.36 -1.96 16 2 C -0.11 -2.12 5.15 -26.73 -0.14 -2.26 16 3 C -0.08 -1.41 1.94 -90.62 -0.18 -1.59 16 4 C -0.12 -1.79 5.19 -26.73 -0.14 -1.93 16 5 C -0.16 -2.49 9.13 37.16 0.34 -2.15 16 6 C 0.11 2.34 1.62 -26.69 -0.04 2.29 16 7 H 0.07 1.60 5.19 -51.93 -0.27 1.33 16 8 C -0.14 -2.74 5.09 -26.59 -0.14 -2.87 16 9 C -0.11 -2.12 5.78 -26.55 -0.15 -2.28 16 10 C -0.14 -3.04 5.59 -26.60 -0.15 -3.19 16 11 C 0.21 5.40 3.16 -27.83 -0.09 5.31 16 12 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 13 C -0.55 -14.87 6.59 -34.44 -0.23 -15.10 16 14 H 0.05 1.45 6.87 -52.49 -0.36 1.09 16 15 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 16 N -0.86 -24.23 12.83 55.43 0.71 -23.51 16 17 Si 0.88 20.97 29.54 -169.99 -5.02 15.95 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 O -0.37 -9.24 8.69 -35.23 -0.31 -9.55 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.65 6.48 -51.93 -0.34 0.31 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.08 1.88 7.42 -51.93 -0.39 1.50 16 26 H 0.06 1.19 6.20 -51.93 -0.32 0.87 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 0.81 6.81 -51.93 -0.35 0.46 16 29 H 0.06 0.81 6.38 -51.93 -0.33 0.48 16 30 H 0.06 1.00 6.19 -51.92 -0.32 0.68 16 31 H 0.06 1.07 6.61 -51.93 -0.34 0.72 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.89 6.77 -51.93 -0.35 0.54 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 1.38 6.85 -51.92 -0.36 1.03 16 37 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 290.06 15.07 4.37 4.37 Total: -1.00 -27.62 290.06 -7.56 -35.18 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.67 Total: 1.13 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: -0.65 Total: -23.57 kcal Atomic # 7 Polarization: -24.23 SS G_CDS: 0.71 Total: -23.51 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -0.31 Total: -9.55 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.62 -7.56 -35.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308647182.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.339 kcal (2) G-P(sol) polarization free energy of solvation -27.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds