Wall clock time and date at job start Mon Mar 30 2020 03:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.46968 * 2 1 4 4 C 1.53000 * 109.47384 * 64.99625 * 3 2 1 5 5 C 1.53004 * 109.46646 * 64.11386 * 4 3 2 6 6 C 1.53000 * 109.47002 * 185.00023 * 3 2 1 7 7 H 1.08997 * 109.48204 * 295.78464 * 6 3 2 8 8 C 1.53089 * 109.49140 * 175.75473 * 6 3 2 9 9 C 1.53176 * 109.16603 * 182.40368 * 8 6 3 10 10 C 1.53170 * 109.03676 * 56.98034 * 9 8 6 11 11 C 1.53093 * 109.16491 * 303.02266 * 10 9 8 12 12 H 1.09000 * 109.49366 * 177.59795 * 11 10 9 13 13 C 1.50706 * 109.48000 * 297.62673 * 11 10 9 14 14 H 1.07996 * 119.99531 * 359.94068 * 13 11 10 15 15 C 1.37874 * 120.00053 * 179.66731 * 13 11 10 16 16 N 1.31518 * 120.00190 * 0.27499 * 15 13 11 17 17 Si 1.86801 * 120.00069 * 180.27100 * 15 13 11 18 18 H 1.48506 * 109.46669 * 90.00090 * 17 15 13 19 19 H 1.48498 * 109.47301 * 209.99699 * 17 15 13 20 20 H 1.48499 * 109.47354 * 330.00425 * 17 15 13 21 21 O 1.42897 * 109.41496 * 57.60734 * 11 10 9 22 22 H 1.08997 * 109.46680 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46725 * 299.99813 * 1 2 3 24 24 H 1.08993 * 109.47102 * 60.00530 * 1 2 3 25 25 H 1.08991 * 109.47021 * 239.99741 * 2 1 3 26 26 H 1.09001 * 109.46988 * 119.99680 * 2 1 3 27 27 H 1.09002 * 109.47265 * 304.99631 * 3 2 1 28 28 H 1.08996 * 109.47306 * 184.10650 * 4 3 2 29 29 H 1.08995 * 109.47222 * 304.11190 * 4 3 2 30 30 H 1.09008 * 109.47072 * 305.72055 * 5 4 3 31 31 H 1.08996 * 109.47339 * 65.72520 * 5 4 3 32 32 H 1.09003 * 109.47150 * 185.73169 * 5 4 3 33 33 H 1.08997 * 109.52438 * 302.31457 * 8 6 3 34 34 H 1.09002 * 109.52054 * 62.49510 * 8 6 3 35 35 H 1.09003 * 109.54285 * 176.85259 * 9 8 6 36 36 H 1.09011 * 109.54225 * 297.11377 * 9 8 6 37 37 H 1.09007 * 109.52425 * 183.11810 * 10 9 8 38 38 H 1.08997 * 109.52543 * 62.92669 * 10 9 8 39 39 H 0.96991 * 120.00389 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 1.3073 5 6 2.3277 1.4323 2.4818 6 6 3.5649 1.4443 -0.1257 7 1 4.0027 0.9711 0.7532 8 6 4.0669 2.8866 -0.2323 9 6 5.5873 2.8775 -0.4181 10 6 5.9341 2.0482 -1.6583 11 6 5.3599 0.6382 -1.4967 12 1 5.5668 0.0561 -2.3948 13 6 5.9976 -0.0307 -0.3063 14 1 6.7388 0.4962 0.2762 15 6 5.6307 -1.3132 0.0424 16 7 4.7281 -1.9548 -0.6671 17 14 6.4156 -2.1395 1.5224 18 1 5.6129 -1.8457 2.7368 19 1 6.4620 -3.6074 1.3030 20 1 7.7957 -1.6222 1.7042 21 8 3.9474 0.7205 -1.2971 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.6055 1.9815 -0.8419 28 1 1.9345 3.1742 1.2770 29 1 0.5544 2.0609 1.4322 30 1 2.1096 0.3647 2.4526 31 1 3.4045 1.5853 2.4107 32 1 1.9620 1.8522 3.4189 33 1 3.5983 3.3732 -1.0877 34 1 3.8145 3.4284 0.6792 35 1 5.9446 3.8987 -0.5507 36 1 6.0593 2.4357 0.4596 37 1 7.0172 1.9902 -1.7667 38 1 5.5032 2.5177 -2.5427 39 1 4.4696 -2.8568 -0.4216 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308647182.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:00 Heat of formation + Delta-G solvation = -96.108907 kcal Electronic energy + Delta-G solvation = -17448.183024 eV Core-core repulsion = 14967.872134 eV Total energy + Delta-G solvation = -2480.310891 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.36125 -37.53706 -34.46209 -33.99155 -32.23215 -31.28356 -28.07787 -26.88564 -24.62076 -24.25628 -22.98750 -20.69743 -19.80187 -18.36499 -16.86046 -16.69625 -16.39889 -15.85499 -15.16984 -15.10378 -14.69399 -14.32531 -13.89432 -13.66555 -13.58230 -13.41314 -12.95226 -12.85455 -12.73494 -12.54006 -12.35495 -12.21404 -12.02017 -11.75454 -11.69902 -11.34035 -11.28654 -11.06972 -10.84167 -10.58294 -10.27238 -9.48013 -8.03723 -6.23581 1.36595 1.38759 1.47134 2.41445 3.17697 3.62006 3.91060 4.10084 4.25283 4.32887 4.36060 4.40407 4.50578 4.56732 4.66069 4.69724 4.86364 4.87483 4.95246 5.00948 5.04256 5.07283 5.13012 5.19757 5.28847 5.32037 5.39079 5.41205 5.49887 5.51805 5.52854 5.69372 5.77090 5.85195 5.90677 6.22832 6.81863 7.28258 7.53601 8.99728 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.020251 B = 0.012964 C = 0.010331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.324502 B = 2159.373375 C = 2709.715145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.074 4.074 4 C -0.108 4.108 5 C -0.155 4.155 6 C 0.105 3.895 7 H 0.036 0.964 8 C -0.139 4.139 9 C -0.106 4.106 10 C -0.136 4.136 11 C 0.208 3.792 12 H 0.019 0.981 13 C -0.559 4.559 14 H 0.052 0.948 15 C 0.037 3.963 16 N -0.886 5.886 17 Si 0.934 3.066 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.268 1.268 21 O -0.392 6.392 22 H 0.048 0.952 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.999 8.429 4.232 11.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.143 4.143 3 C -0.093 4.093 4 C -0.145 4.145 5 C -0.212 4.212 6 C 0.047 3.953 7 H 0.054 0.946 8 C -0.177 4.177 9 C -0.143 4.143 10 C -0.174 4.174 11 C 0.151 3.849 12 H 0.037 0.963 13 C -0.597 4.597 14 H 0.070 0.930 15 C -0.166 4.166 16 N -0.524 5.524 17 Si 0.760 3.240 18 H -0.202 1.202 19 H -0.210 1.210 20 H -0.192 1.192 21 O -0.312 6.312 22 H 0.067 0.933 23 H 0.088 0.912 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.226 8.183 4.073 11.060 hybrid contribution 0.971 -0.977 0.595 1.500 sum -5.255 7.206 4.668 10.067 Atomic orbital electron populations 1.21775 0.94492 1.01381 1.02181 1.21293 0.96030 0.96474 1.00511 1.21146 0.93528 0.96194 0.98422 1.21530 1.00951 0.99358 0.92647 1.21870 1.00294 1.00358 0.98706 1.21764 0.93755 0.90287 0.89496 0.94586 1.22155 0.95975 0.97691 1.01831 1.21419 0.96269 0.98898 0.97745 1.22066 1.00010 0.97583 0.97767 1.19529 0.79515 0.90968 0.94856 0.96348 1.21724 1.24000 0.99723 1.14268 0.93004 1.25634 0.94839 0.97699 0.98409 1.70181 1.30786 1.11881 1.39506 0.85946 0.79381 0.77853 0.80847 1.20170 1.21043 1.19240 1.87806 1.24653 1.75130 1.43563 0.93278 0.91207 0.92501 0.94460 0.94309 0.91658 0.90750 0.89973 0.94015 0.94081 0.91086 0.92113 0.90244 0.91096 0.93173 0.92535 0.93125 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 9.67 71.99 0.70 -3.42 16 2 C -0.11 -4.08 5.15 30.60 0.16 -3.92 16 3 C -0.07 -2.65 1.94 -10.79 -0.02 -2.67 16 4 C -0.11 -2.99 5.19 30.60 0.16 -2.83 16 5 C -0.16 -4.64 9.13 71.98 0.66 -3.99 16 6 C 0.11 4.47 1.62 30.62 0.05 4.52 16 7 H 0.04 1.76 5.19 -2.39 -0.01 1.75 16 8 C -0.14 -4.95 5.09 30.68 0.16 -4.80 16 9 C -0.11 -3.95 5.78 30.71 0.18 -3.77 16 10 C -0.14 -5.78 5.59 30.68 0.17 -5.61 16 11 C 0.21 10.86 3.16 29.88 0.09 10.95 16 12 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 13 C -0.56 -30.73 6.59 25.60 0.17 -30.56 16 14 H 0.05 2.81 6.87 -2.91 -0.02 2.79 16 15 C 0.04 2.07 5.40 84.65 0.46 2.52 16 16 N -0.89 -52.25 12.83 21.45 0.28 -51.97 16 17 Si 0.93 43.86 29.54 68.60 2.03 45.88 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 O -0.39 -20.24 8.69 -148.98 -1.29 -21.53 16 22 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.07 1.72 6.48 -2.38 -0.02 1.70 16 24 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.04 1.76 7.42 -2.39 -0.02 1.74 16 26 H 0.04 1.62 6.20 -2.39 -0.01 1.60 16 27 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.07 1.83 6.81 -2.39 -0.02 1.81 16 29 H 0.08 1.93 6.38 -2.39 -0.02 1.91 16 30 H 0.04 1.38 6.19 -2.38 -0.01 1.36 16 31 H 0.04 1.38 6.61 -2.39 -0.02 1.36 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.08 2.41 6.77 -2.39 -0.02 2.40 16 35 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.05 2.02 6.85 -2.38 -0.02 2.01 16 37 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -61.57 290.06 4.93 -56.64 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 1.00 Total: 14.54 kcal Atomic # 6 Polarization: -46.48 SS G_CDS: 2.92 Total: -43.56 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.28 Total: -51.97 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -1.29 Total: -21.53 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -61.57 4.93 -56.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308647182.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.466 kcal (2) G-P(sol) polarization free energy of solvation -61.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds