Wall clock time and date at job start Mon Mar 30 2020 02:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46764 * 124.34710 * 2 1 4 4 C 1.54486 * 105.47063 * 197.03509 * 3 2 1 5 5 H 1.09000 * 111.00266 * 216.45426 * 4 3 2 6 6 N 1.46906 * 110.96768 * 92.70344 * 4 3 2 7 7 C 1.46901 * 110.99793 * 161.16947 * 6 4 3 8 8 C 1.53000 * 109.46769 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.46886 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47291 * 179.97438 * 9 8 7 11 11 H 1.08006 * 119.99920 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 9 8 13 13 N 1.31520 * 120.00162 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99868 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47023 * 90.00014 * 14 12 10 16 16 H 1.48496 * 109.47251 * 210.00457 * 14 12 10 17 17 H 1.48498 * 109.47139 * 330.00202 * 14 12 10 18 18 C 1.54626 * 101.76555 * 334.58412 * 4 3 2 19 19 C 1.34415 * 124.35224 * 180.02562 * 2 1 3 20 20 O 1.21289 * 124.93763 * 359.60546 * 19 2 1 21 21 H 1.09001 * 109.47286 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46971 * 300.00456 * 1 2 3 23 23 H 1.09007 * 109.47082 * 60.00058 * 1 2 3 24 24 H 1.08998 * 110.25155 * 78.04097 * 3 2 1 25 25 H 1.08996 * 110.24900 * 316.03170 * 3 2 1 26 26 H 1.00898 * 110.99995 * 285.12024 * 6 4 3 27 27 H 1.09002 * 109.47401 * 59.99808 * 7 6 4 28 28 H 1.09001 * 109.46874 * 299.99821 * 7 6 4 29 29 H 1.09001 * 109.47194 * 299.99524 * 8 7 6 30 30 H 1.08992 * 109.47399 * 59.99697 * 8 7 6 31 31 H 1.09001 * 109.47109 * 299.99380 * 9 8 7 32 32 H 1.09002 * 109.47508 * 59.99571 * 9 8 7 33 33 H 0.96996 * 119.99309 * 179.97438 * 13 12 10 34 34 H 1.09006 * 110.48876 * 143.47164 * 18 4 3 35 35 H 1.09000 * 110.48680 * 266.12021 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2117 0.0000 4 6 3.7009 0.7488 -0.4362 5 1 4.4758 1.3008 0.0956 6 7 3.8701 0.8785 -1.8897 7 6 5.2926 0.8765 -2.2563 8 6 5.4282 1.0137 -3.7741 9 6 6.9097 1.0110 -4.1560 10 6 7.0434 1.1455 -5.6510 11 1 6.1599 1.2245 -6.2672 12 6 8.2934 1.1676 -6.2323 13 7 8.4100 1.2844 -7.5371 14 14 9.8215 1.0316 -5.1665 15 1 10.1916 -0.3982 -5.0121 16 1 10.9405 1.7660 -5.8097 17 1 9.5471 1.6190 -3.8305 18 6 3.6898 -0.7378 -0.0109 19 6 2.2235 -1.1097 -0.0005 20 8 1.7946 -2.2442 0.0058 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 2.3310 1.6428 1.0004 25 1 1.8982 1.9384 -0.7099 26 1 3.3697 0.1512 -2.3783 27 1 5.7498 -0.0588 -1.9333 28 1 5.7943 1.7132 -1.7700 29 1 4.9264 0.1773 -4.2608 30 1 4.9711 1.9491 -4.0967 31 1 7.4119 1.8471 -3.6694 32 1 7.3665 0.0753 -3.8335 33 1 9.2895 1.3004 -7.9458 34 1 4.2324 -1.3458 -0.7348 35 1 4.1197 -0.8531 0.9841 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308652530.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:10 Heat of formation + Delta-G solvation = -42.333424 kcal Electronic energy + Delta-G solvation = -15340.649509 eV Core-core repulsion = 12759.130155 eV Total energy + Delta-G solvation = -2581.519354 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.64069 -37.26092 -35.64382 -33.69971 -32.11281 -30.35790 -27.79205 -26.87648 -25.71485 -22.38626 -21.42108 -20.13016 -19.64068 -16.99983 -16.72209 -16.59695 -15.87869 -15.11183 -14.60461 -14.26793 -13.99183 -13.89987 -13.70083 -12.86463 -12.69180 -12.51540 -12.36987 -12.06777 -12.01443 -11.62131 -11.57246 -10.99218 -10.81352 -10.04274 -9.93934 -9.76680 -9.61674 -9.18534 -8.93858 -8.53657 -8.44790 -6.03779 -4.01810 2.41141 2.83586 3.30463 3.37854 3.40802 3.98745 4.13905 4.39688 4.45206 4.67775 4.97479 5.08963 5.10299 5.29930 5.30542 5.39760 5.47423 5.48600 5.58039 5.59890 5.75129 6.10408 6.27413 6.48159 6.52163 6.87290 6.88653 7.05732 7.31677 7.33387 7.44476 7.80062 7.98938 8.54964 9.01660 9.58620 11.09828 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.051631 B = 0.004483 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.176103 B = 6244.006603 C = 6330.644649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.623 5.623 3 C 0.108 3.892 4 C 0.076 3.924 5 H 0.108 0.892 6 N -0.678 5.678 7 C 0.055 3.945 8 C -0.101 4.101 9 C -0.013 4.013 10 C -0.520 4.520 11 H 0.071 0.929 12 C 0.065 3.935 13 N -0.904 5.904 14 Si 0.881 3.119 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.266 1.266 18 C -0.190 4.190 19 C 0.517 3.483 20 O -0.538 6.538 21 H 0.080 0.920 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.343 0.657 27 H 0.028 0.972 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.016 0.984 32 H 0.009 0.991 33 H 0.263 0.737 34 H 0.103 0.897 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.713 0.495 17.968 21.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.358 5.358 3 C -0.016 4.016 4 C -0.036 4.036 5 H 0.126 0.874 6 N -0.308 5.308 7 C -0.073 4.073 8 C -0.139 4.139 9 C -0.051 4.051 10 C -0.558 4.558 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.543 5.543 14 Si 0.709 3.291 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.190 1.190 18 C -0.232 4.232 19 C 0.305 3.695 20 O -0.415 6.415 21 H 0.099 0.901 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.093 0.907 25 H 0.111 0.889 26 H 0.161 0.839 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.027 0.973 33 H 0.072 0.928 34 H 0.121 0.879 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.944 0.614 17.818 21.459 hybrid contribution 1.083 -0.961 0.537 1.544 sum -10.861 -0.347 18.355 21.331 Atomic orbital electron populations 1.21552 0.78165 1.03595 1.01556 1.48175 1.06562 1.07580 1.73437 1.22272 0.90228 0.87328 1.01749 1.22577 0.96947 0.93176 0.90850 0.87416 1.60601 1.13152 1.53293 1.03750 1.22222 0.86331 0.99941 0.98812 1.21455 0.99487 1.01722 0.91205 1.19539 0.91852 0.96114 0.97546 1.21147 0.94086 1.50125 0.90433 0.91046 1.25048 0.99091 0.94627 0.94827 1.69923 1.23848 1.50970 1.09602 0.86760 0.82848 0.78391 0.81148 1.20365 1.21406 1.19034 1.23152 0.94868 0.99866 1.05354 1.20902 0.89352 0.84328 0.74944 1.90719 1.78800 1.21252 1.50729 0.90116 0.92180 0.91830 0.90724 0.88918 0.83886 0.95363 0.91055 0.93025 0.91830 0.96562 0.97254 0.92760 0.87870 0.87451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 11.14 59.85 0.67 1.43 16 2 N -0.62 -6.30 3.33 -180.28 -0.60 -6.90 16 3 C 0.11 0.88 7.08 -3.12 -0.02 0.86 16 4 C 0.08 0.72 3.43 -66.08 -0.23 0.49 16 5 H 0.11 0.88 7.92 -51.93 -0.41 0.47 16 6 N -0.68 -8.35 6.30 -104.99 -0.66 -9.01 16 7 C 0.06 0.81 5.54 -3.82 -0.02 0.79 16 8 C -0.10 -1.92 5.41 -26.73 -0.14 -2.07 16 9 C -0.01 -0.29 4.04 -27.88 -0.11 -0.41 16 10 C -0.52 -14.86 9.66 -34.44 -0.33 -15.19 16 11 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 12 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 13 N -0.90 -28.06 13.96 55.43 0.77 -27.28 16 14 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 18 C -0.19 -1.93 6.31 -26.74 -0.17 -2.10 16 19 C 0.52 6.57 8.02 -10.86 -0.09 6.48 16 20 O -0.54 -8.99 17.35 5.55 0.10 -8.90 16 21 H 0.08 0.76 7.53 -51.93 -0.39 0.36 16 22 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 26 H 0.34 4.41 8.53 -39.29 -0.34 4.08 16 27 H 0.03 0.41 7.85 -51.93 -0.41 0.00 16 28 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 32 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 33 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.10 1.15 7.79 -51.93 -0.40 0.75 16 35 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 290.97 15.07 4.38 4.38 Total: -1.00 -33.13 290.97 -6.90 -40.03 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -5.68 Total: -1.41 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -0.55 Total: -7.92 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: -0.49 Total: -43.19 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.10 Total: -8.90 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.13 -6.90 -40.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308652530.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.301 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds