Wall clock time and date at job start Mon Mar 30 2020 03:21:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53000 * 109.46678 * 2 1
4 4 C 1.53000 * 109.47047 * 180.02562 * 3 2 1
5 5 C 1.52994 * 109.47516 * 180.02562 * 4 3 2
6 6 C 1.53000 * 109.47516 * 180.02562 * 5 4 3
7 7 H 1.08998 * 110.67409 * 56.51215 * 6 5 4
8 8 C 1.54994 * 110.61921 * 179.47337 * 6 5 4
9 9 C 1.54813 * 102.09136 * 155.52378 * 8 6 5
10 10 C 1.54105 * 104.18926 * 339.12219 * 9 8 6
11 11 C 1.52996 * 110.00270 * 117.45889 * 10 9 8
12 12 C 1.50690 * 109.87660 * 238.54716 * 10 9 8
13 13 H 1.08001 * 120.00810 * 352.55094 * 12 10 9
14 14 C 1.37885 * 119.99840 * 172.55740 * 12 10 9
15 15 N 1.31518 * 120.00102 * 165.09146 * 14 12 10
16 16 Si 1.86795 * 119.99951 * 345.09449 * 14 12 10
17 17 H 1.48502 * 109.47116 * 179.97438 * 16 14 12
18 18 H 1.48497 * 109.47161 * 299.99813 * 16 14 12
19 19 H 1.48499 * 109.47318 * 59.99823 * 16 14 12
20 20 O 1.43747 * 107.28838 * 357.96712 * 10 9 8
21 21 H 1.09001 * 109.47635 * 299.99819 * 1 2 3
22 22 H 1.09001 * 109.47351 * 60.00105 * 1 2 3
23 23 H 1.09000 * 109.47088 * 180.02562 * 1 2 3
24 24 H 1.09004 * 109.46939 * 240.00369 * 2 1 3
25 25 H 1.08999 * 109.46845 * 119.99833 * 2 1 3
26 26 H 1.08996 * 109.47182 * 60.00178 * 3 2 1
27 27 H 1.09001 * 109.47144 * 300.00022 * 3 2 1
28 28 H 1.09007 * 109.46728 * 59.99704 * 4 3 2
29 29 H 1.09001 * 109.47115 * 299.99977 * 4 3 2
30 30 H 1.08999 * 109.47421 * 59.99777 * 5 4 3
31 31 H 1.09007 * 109.47317 * 300.00198 * 5 4 3
32 32 H 1.08997 * 110.91013 * 273.72268 * 8 6 5
33 33 H 1.09001 * 110.90466 * 37.32669 * 8 6 5
34 34 H 1.08998 * 110.48797 * 220.44090 * 9 8 6
35 35 H 1.08996 * 110.48492 * 97.79766 * 9 8 6
36 36 H 1.09002 * 109.46802 * 174.88601 * 11 10 9
37 37 H 1.09001 * 109.47554 * 294.88762 * 11 10 9
38 38 H 1.08997 * 109.46910 * 54.89399 * 11 10 9
39 39 H 0.97002 * 119.99567 * 354.89600 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 3.5699 1.4426 -0.0006
5 6 4.0799 2.8851 0.0000
6 6 5.6099 2.8852 -0.0013
7 1 5.9940 2.3231 -0.8525
8 6 6.1556 4.3358 -0.0140
9 6 7.5598 4.1595 0.6135
10 6 7.4650 2.8281 1.3836
11 6 8.4493 1.8136 0.7982
12 6 7.7711 3.0565 2.8413
13 1 8.1271 4.0203 3.1740
14 6 7.5967 2.0347 3.7507
15 7 8.1284 2.1242 4.9503
16 14 6.6055 0.5234 3.2787
17 1 6.5679 -0.4213 4.4239
18 1 5.2214 0.9296 2.9259
19 1 7.2396 -0.1397 2.1111
20 8 6.1193 2.3445 1.2367
21 1 -0.3634 0.5138 0.8900
22 1 -0.3634 0.5138 -0.8900
23 1 -0.3633 -1.0277 0.0005
24 1 1.8933 -0.5138 -0.8901
25 1 1.8933 -0.5138 0.8900
26 1 1.6766 1.9563 0.8900
27 1 1.6765 1.9564 -0.8900
28 1 3.9328 0.9289 -0.8909
29 1 3.9336 0.9287 0.8891
30 1 3.7169 3.3984 0.8904
31 1 3.7161 3.3995 -0.8896
32 1 6.2298 4.7146 -1.0333
33 1 5.5352 4.9901 0.5984
34 1 7.7783 4.9806 1.2963
35 1 8.3203 4.0967 -0.1648
36 1 8.4408 0.9077 1.4043
37 1 8.1559 1.5703 -0.2231
38 1 9.4524 2.2400 0.7963
39 1 8.7041 2.8730 5.1709
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000308658068.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:58
Heat of formation + Delta-G solvation = -83.346551 kcal
Electronic energy + Delta-G solvation = -16545.921230 eV
Core-core repulsion = 14066.163757 eV
Total energy + Delta-G solvation = -2479.757473 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.167 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-38.85790 -36.02657 -33.38346 -32.04637 -31.20688 -29.90756 -27.08460 -24.94158
-23.56512 -21.58182 -20.74588 -20.15858 -19.16680 -17.53250 -15.94683 -15.30600
-14.65005 -13.85969 -13.73835 -13.64727 -13.40382 -13.01751 -12.76449 -12.61858
-12.21954 -11.83244 -11.66110 -11.39624 -11.18356 -11.01386 -10.84791 -10.71533
-10.66687 -10.26054 -10.13038 -9.96171 -9.88816 -9.73078 -9.17941 -9.05400
-8.31596 -8.19859 -6.38718 -4.11903 3.60912 3.64868 3.91445 4.66718
4.82694 4.87334 5.01761 5.16584 5.36170 5.38010 5.45790 5.51399
5.64470 5.68658 5.76350 5.81991 5.87487 5.97993 6.05395 6.07676
6.14919 6.26226 6.27331 6.35320 6.38860 6.47118 6.55554 6.56726
6.65426 6.71368 6.77836 6.88662 6.94636 7.41528 8.06834 8.27607
8.40546 8.94113 9.62681 10.97653
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.025245 B = 0.008713 C = 0.007087
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1108.885555 B = 3212.724738 C = 3949.807469
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.127 4.127
3 C -0.118 4.118
4 C -0.121 4.121
5 C -0.109 4.109
6 C 0.071 3.929
7 H 0.052 0.948
8 C -0.146 4.146
9 C -0.131 4.131
10 C 0.192 3.808
11 C -0.158 4.158
12 C -0.591 4.591
13 H 0.061 0.939
14 C 0.042 3.958
15 N -0.904 5.904
16 Si 1.067 2.933
17 H -0.306 1.306
18 H -0.269 1.269
19 H -0.280 1.280
20 O -0.368 6.368
21 H 0.053 0.947
22 H 0.051 0.949
23 H 0.050 0.950
24 H 0.059 0.941
25 H 0.063 0.937
26 H 0.060 0.940
27 H 0.056 0.944
28 H 0.056 0.944
29 H 0.073 0.927
30 H 0.068 0.932
31 H 0.062 0.938
32 H 0.059 0.941
33 H 0.068 0.932
34 H 0.066 0.934
35 H 0.052 0.948
36 H 0.060 0.940
37 H 0.025 0.975
38 H 0.050 0.950
39 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.939 -0.932 -12.059 15.655
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.165 4.165
3 C -0.156 4.156
4 C -0.158 4.158
5 C -0.146 4.146
6 C 0.013 3.987
7 H 0.070 0.930
8 C -0.184 4.184
9 C -0.169 4.169
10 C 0.154 3.846
11 C -0.215 4.215
12 C -0.628 4.628
13 H 0.079 0.921
14 C -0.164 4.164
15 N -0.537 5.537
16 Si 0.899 3.101
17 H -0.235 1.235
18 H -0.196 1.196
19 H -0.207 1.207
20 O -0.289 6.289
21 H 0.072 0.928
22 H 0.070 0.930
23 H 0.069 0.931
24 H 0.078 0.922
25 H 0.081 0.919
26 H 0.079 0.921
27 H 0.075 0.925
28 H 0.074 0.926
29 H 0.092 0.908
30 H 0.087 0.913
31 H 0.081 0.919
32 H 0.078 0.922
33 H 0.087 0.913
34 H 0.085 0.915
35 H 0.070 0.930
36 H 0.079 0.921
37 H 0.044 0.956
38 H 0.069 0.931
39 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -10.631 -2.467 -11.321 15.725
hybrid contribution 0.847 1.751 -0.773 2.093
sum -9.783 -0.716 -12.094 15.573
Atomic orbital electron populations
1.21777 0.96284 1.01233 1.01578 1.21555 0.95404 0.97434 1.02079
1.21623 0.96076 0.96315 1.01587 1.21596 0.94405 0.97210 1.02632
1.21582 0.94285 0.97021 1.01724 1.22945 0.93477 0.92606 0.89672
0.93032 1.23076 0.97820 0.97743 0.99769 1.22891 0.95247 1.00206
0.98529 1.20141 0.79604 0.88416 0.96428 1.22504 0.99657 1.01236
0.98125 1.21951 1.49412 1.00369 0.91101 0.92102 1.25929 0.95408
1.01896 0.93153 1.70903 1.28856 1.32215 1.21768 0.83747 0.77957
0.74615 0.73809 1.23500 1.19559 1.20722 1.88921 1.30629 1.72168
1.37225 0.92813 0.93031 0.93069 0.92250 0.91863 0.92080 0.92547
0.92573 0.90820 0.91318 0.91937 0.92199 0.91309 0.91493 0.92970
0.92136 0.95599 0.93121 0.92428
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.48 9.91 37.16 0.37 -1.11 16
2 C -0.13 -1.46 5.93 -26.73 -0.16 -1.62 16
3 C -0.12 -1.49 5.21 -26.73 -0.14 -1.63 16
4 C -0.12 -1.83 5.13 -26.73 -0.14 -1.97 16
5 C -0.11 -1.72 4.99 -26.73 -0.13 -1.85 16
6 C 0.07 1.32 3.24 -25.68 -0.08 1.24 16
7 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16
8 C -0.15 -2.60 6.59 -24.72 -0.16 -2.76 16
9 C -0.13 -2.71 6.27 -25.20 -0.16 -2.87 16
10 C 0.19 4.66 0.70 -91.20 -0.06 4.60 16
11 C -0.16 -3.58 8.31 37.16 0.31 -3.27 16
12 C -0.59 -17.03 8.64 -34.44 -0.30 -17.33 16
13 H 0.06 1.86 7.61 -52.49 -0.40 1.46 16
14 C 0.04 1.26 5.34 -17.81 -0.10 1.16 16
15 N -0.90 -28.43 13.70 55.43 0.76 -27.67 16
16 Si 1.07 27.81 24.83 -169.99 -4.22 23.59 16
17 H -0.31 -8.06 7.11 56.52 0.40 -7.66 16
18 H -0.27 -6.83 6.75 56.52 0.38 -6.45 16
19 H -0.28 -6.87 5.64 56.52 0.32 -6.55 16
20 O -0.37 -8.70 6.51 -35.23 -0.23 -8.93 16
21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16
23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16
25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
28 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16
29 H 0.07 1.33 7.92 -51.93 -0.41 0.92 16
30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16
31 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16
32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
33 H 0.07 1.22 8.06 -51.93 -0.42 0.80 16
34 H 0.07 1.44 7.42 -51.93 -0.39 1.06 16
35 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16
36 H 0.06 1.46 4.75 -51.93 -0.25 1.22 16
37 H 0.02 0.51 8.00 -51.93 -0.42 0.09 16
38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16
39 H 0.27 8.25 8.73 -40.82 -0.36 7.89 16
LS Contribution 300.74 15.07 4.53 4.53
Total: -1.00 -30.72 300.74 -7.33 -38.06
By element:
Atomic # 1 Polarization: 5.25 SS G_CDS: -7.42 Total: -2.17 kcal
Atomic # 6 Polarization: -26.65 SS G_CDS: -0.75 Total: -27.41 kcal
Atomic # 7 Polarization: -28.43 SS G_CDS: 0.76 Total: -27.67 kcal
Atomic # 8 Polarization: -8.70 SS G_CDS: -0.23 Total: -8.93 kcal
Atomic # 14 Polarization: 27.81 SS G_CDS: -4.22 Total: 23.59 kcal
Total LS contribution 4.53 Total: 4.53 kcal
Total: -30.72 -7.33 -38.06 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308658068.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.291 kcal
(2) G-P(sol) polarization free energy of solvation -30.723 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.014 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.055 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.347 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds