Wall clock time and date at job start Mon Mar 30 2020 03:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46678 * 2 1 4 4 C 1.53000 * 109.47047 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47516 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47516 * 180.02562 * 5 4 3 7 7 H 1.08998 * 110.67409 * 56.51215 * 6 5 4 8 8 C 1.54994 * 110.61921 * 179.47337 * 6 5 4 9 9 C 1.54813 * 102.09136 * 155.52378 * 8 6 5 10 10 C 1.54105 * 104.18926 * 339.12219 * 9 8 6 11 11 C 1.52996 * 110.00270 * 117.45889 * 10 9 8 12 12 C 1.50690 * 109.87660 * 238.54716 * 10 9 8 13 13 H 1.08001 * 120.00810 * 352.55094 * 12 10 9 14 14 C 1.37885 * 119.99840 * 172.55740 * 12 10 9 15 15 N 1.31518 * 120.00102 * 165.09146 * 14 12 10 16 16 Si 1.86795 * 119.99951 * 345.09449 * 14 12 10 17 17 H 1.48502 * 109.47116 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.47161 * 299.99813 * 16 14 12 19 19 H 1.48499 * 109.47318 * 59.99823 * 16 14 12 20 20 O 1.43747 * 107.28838 * 357.96712 * 10 9 8 21 21 H 1.09001 * 109.47635 * 299.99819 * 1 2 3 22 22 H 1.09001 * 109.47351 * 60.00105 * 1 2 3 23 23 H 1.09000 * 109.47088 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46939 * 240.00369 * 2 1 3 25 25 H 1.08999 * 109.46845 * 119.99833 * 2 1 3 26 26 H 1.08996 * 109.47182 * 60.00178 * 3 2 1 27 27 H 1.09001 * 109.47144 * 300.00022 * 3 2 1 28 28 H 1.09007 * 109.46728 * 59.99704 * 4 3 2 29 29 H 1.09001 * 109.47115 * 299.99977 * 4 3 2 30 30 H 1.08999 * 109.47421 * 59.99777 * 5 4 3 31 31 H 1.09007 * 109.47317 * 300.00198 * 5 4 3 32 32 H 1.08997 * 110.91013 * 273.72268 * 8 6 5 33 33 H 1.09001 * 110.90466 * 37.32669 * 8 6 5 34 34 H 1.08998 * 110.48797 * 220.44090 * 9 8 6 35 35 H 1.08996 * 110.48492 * 97.79766 * 9 8 6 36 36 H 1.09002 * 109.46802 * 174.88601 * 11 10 9 37 37 H 1.09001 * 109.47554 * 294.88762 * 11 10 9 38 38 H 1.08997 * 109.46910 * 54.89399 * 11 10 9 39 39 H 0.97002 * 119.99567 * 354.89600 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8852 -0.0013 7 1 5.9940 2.3231 -0.8525 8 6 6.1556 4.3358 -0.0140 9 6 7.5598 4.1595 0.6135 10 6 7.4650 2.8281 1.3836 11 6 8.4493 1.8136 0.7982 12 6 7.7711 3.0565 2.8413 13 1 8.1271 4.0203 3.1740 14 6 7.5967 2.0347 3.7507 15 7 8.1284 2.1242 4.9503 16 14 6.6055 0.5234 3.2787 17 1 6.5679 -0.4213 4.4239 18 1 5.2214 0.9296 2.9259 19 1 7.2396 -0.1397 2.1111 20 8 6.1193 2.3445 1.2367 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.6765 1.9564 -0.8900 28 1 3.9328 0.9289 -0.8909 29 1 3.9336 0.9287 0.8891 30 1 3.7169 3.3984 0.8904 31 1 3.7161 3.3995 -0.8896 32 1 6.2298 4.7146 -1.0333 33 1 5.5352 4.9901 0.5984 34 1 7.7783 4.9806 1.2963 35 1 8.3203 4.0967 -0.1648 36 1 8.4408 0.9077 1.4043 37 1 8.1559 1.5703 -0.2231 38 1 9.4524 2.2400 0.7963 39 1 8.7041 2.8730 5.1709 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308658068.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:58 Heat of formation + Delta-G solvation = -83.346551 kcal Electronic energy + Delta-G solvation = -16545.921230 eV Core-core repulsion = 14066.163757 eV Total energy + Delta-G solvation = -2479.757473 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.85790 -36.02657 -33.38346 -32.04637 -31.20688 -29.90756 -27.08460 -24.94158 -23.56512 -21.58182 -20.74588 -20.15858 -19.16680 -17.53250 -15.94683 -15.30600 -14.65005 -13.85969 -13.73835 -13.64727 -13.40382 -13.01751 -12.76449 -12.61858 -12.21954 -11.83244 -11.66110 -11.39624 -11.18356 -11.01386 -10.84791 -10.71533 -10.66687 -10.26054 -10.13038 -9.96171 -9.88816 -9.73078 -9.17941 -9.05400 -8.31596 -8.19859 -6.38718 -4.11903 3.60912 3.64868 3.91445 4.66718 4.82694 4.87334 5.01761 5.16584 5.36170 5.38010 5.45790 5.51399 5.64470 5.68658 5.76350 5.81991 5.87487 5.97993 6.05395 6.07676 6.14919 6.26226 6.27331 6.35320 6.38860 6.47118 6.55554 6.56726 6.65426 6.71368 6.77836 6.88662 6.94636 7.41528 8.06834 8.27607 8.40546 8.94113 9.62681 10.97653 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025245 B = 0.008713 C = 0.007087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.885555 B = 3212.724738 C = 3949.807469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.118 4.118 4 C -0.121 4.121 5 C -0.109 4.109 6 C 0.071 3.929 7 H 0.052 0.948 8 C -0.146 4.146 9 C -0.131 4.131 10 C 0.192 3.808 11 C -0.158 4.158 12 C -0.591 4.591 13 H 0.061 0.939 14 C 0.042 3.958 15 N -0.904 5.904 16 Si 1.067 2.933 17 H -0.306 1.306 18 H -0.269 1.269 19 H -0.280 1.280 20 O -0.368 6.368 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.025 0.975 38 H 0.050 0.950 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.939 -0.932 -12.059 15.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.156 4.156 4 C -0.158 4.158 5 C -0.146 4.146 6 C 0.013 3.987 7 H 0.070 0.930 8 C -0.184 4.184 9 C -0.169 4.169 10 C 0.154 3.846 11 C -0.215 4.215 12 C -0.628 4.628 13 H 0.079 0.921 14 C -0.164 4.164 15 N -0.537 5.537 16 Si 0.899 3.101 17 H -0.235 1.235 18 H -0.196 1.196 19 H -0.207 1.207 20 O -0.289 6.289 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.631 -2.467 -11.321 15.725 hybrid contribution 0.847 1.751 -0.773 2.093 sum -9.783 -0.716 -12.094 15.573 Atomic orbital electron populations 1.21777 0.96284 1.01233 1.01578 1.21555 0.95404 0.97434 1.02079 1.21623 0.96076 0.96315 1.01587 1.21596 0.94405 0.97210 1.02632 1.21582 0.94285 0.97021 1.01724 1.22945 0.93477 0.92606 0.89672 0.93032 1.23076 0.97820 0.97743 0.99769 1.22891 0.95247 1.00206 0.98529 1.20141 0.79604 0.88416 0.96428 1.22504 0.99657 1.01236 0.98125 1.21951 1.49412 1.00369 0.91101 0.92102 1.25929 0.95408 1.01896 0.93153 1.70903 1.28856 1.32215 1.21768 0.83747 0.77957 0.74615 0.73809 1.23500 1.19559 1.20722 1.88921 1.30629 1.72168 1.37225 0.92813 0.93031 0.93069 0.92250 0.91863 0.92080 0.92547 0.92573 0.90820 0.91318 0.91937 0.92199 0.91309 0.91493 0.92970 0.92136 0.95599 0.93121 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.16 0.37 -1.11 16 2 C -0.13 -1.46 5.93 -26.73 -0.16 -1.62 16 3 C -0.12 -1.49 5.21 -26.73 -0.14 -1.63 16 4 C -0.12 -1.83 5.13 -26.73 -0.14 -1.97 16 5 C -0.11 -1.72 4.99 -26.73 -0.13 -1.85 16 6 C 0.07 1.32 3.24 -25.68 -0.08 1.24 16 7 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 8 C -0.15 -2.60 6.59 -24.72 -0.16 -2.76 16 9 C -0.13 -2.71 6.27 -25.20 -0.16 -2.87 16 10 C 0.19 4.66 0.70 -91.20 -0.06 4.60 16 11 C -0.16 -3.58 8.31 37.16 0.31 -3.27 16 12 C -0.59 -17.03 8.64 -34.44 -0.30 -17.33 16 13 H 0.06 1.86 7.61 -52.49 -0.40 1.46 16 14 C 0.04 1.26 5.34 -17.81 -0.10 1.16 16 15 N -0.90 -28.43 13.70 55.43 0.76 -27.67 16 16 Si 1.07 27.81 24.83 -169.99 -4.22 23.59 16 17 H -0.31 -8.06 7.11 56.52 0.40 -7.66 16 18 H -0.27 -6.83 6.75 56.52 0.38 -6.45 16 19 H -0.28 -6.87 5.64 56.52 0.32 -6.55 16 20 O -0.37 -8.70 6.51 -35.23 -0.23 -8.93 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.07 1.33 7.92 -51.93 -0.41 0.92 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.22 8.06 -51.93 -0.42 0.80 16 34 H 0.07 1.44 7.42 -51.93 -0.39 1.06 16 35 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 36 H 0.06 1.46 4.75 -51.93 -0.25 1.22 16 37 H 0.02 0.51 8.00 -51.93 -0.42 0.09 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.27 8.25 8.73 -40.82 -0.36 7.89 16 LS Contribution 300.74 15.07 4.53 4.53 Total: -1.00 -30.72 300.74 -7.33 -38.06 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -7.42 Total: -2.17 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: -0.75 Total: -27.41 kcal Atomic # 7 Polarization: -28.43 SS G_CDS: 0.76 Total: -27.67 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.23 Total: -8.93 kcal Atomic # 14 Polarization: 27.81 SS G_CDS: -4.22 Total: 23.59 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.72 -7.33 -38.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308658068.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.291 kcal (2) G-P(sol) polarization free energy of solvation -30.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds