Wall clock time and date at job start Mon Mar 30 2020 03:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46840 * 2 1 4 4 C 1.53007 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.46870 * 179.97438 * 5 4 3 7 7 H 1.09002 * 110.35321 * 304.31370 * 6 5 4 8 8 C 1.54948 * 110.31243 * 182.16617 * 6 5 4 9 9 C 1.55525 * 100.95236 * 204.61876 * 8 6 5 10 10 C 1.54382 * 102.14830 * 34.15410 * 9 8 6 11 11 C 1.53007 * 109.82944 * 219.05491 * 10 9 8 12 12 C 1.50696 * 109.83340 * 98.17065 * 10 9 8 13 13 H 1.07999 * 119.99822 * 0.18864 * 12 10 9 14 14 C 1.37884 * 120.00126 * 180.18723 * 12 10 9 15 15 N 1.31514 * 119.99707 * 180.02562 * 14 12 10 16 16 Si 1.86796 * 119.99956 * 0.27447 * 14 12 10 17 17 H 1.48503 * 109.47407 * 269.72718 * 16 14 12 18 18 H 1.48505 * 109.47281 * 29.72474 * 16 14 12 19 19 H 1.48501 * 109.47274 * 149.72572 * 16 14 12 20 20 O 1.43239 * 107.66559 * 338.61143 * 10 9 8 21 21 H 1.09000 * 109.46941 * 59.99934 * 1 2 3 22 22 H 1.08995 * 109.47179 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46878 * 300.00159 * 1 2 3 24 24 H 1.08995 * 109.46916 * 240.00622 * 2 1 3 25 25 H 1.09000 * 109.46941 * 120.00066 * 2 1 3 26 26 H 1.08997 * 109.47514 * 60.00231 * 3 2 1 27 27 H 1.09000 * 109.47408 * 299.99780 * 3 2 1 28 28 H 1.08997 * 109.46878 * 59.99841 * 4 3 2 29 29 H 1.09000 * 109.46941 * 300.00066 * 4 3 2 30 30 H 1.09000 * 109.46622 * 60.00176 * 5 4 3 31 31 H 1.09000 * 109.47408 * 299.99780 * 5 4 3 32 32 H 1.08998 * 111.11880 * 322.56110 * 8 6 5 33 33 H 1.09001 * 111.11808 * 86.67880 * 8 6 5 34 34 H 1.09007 * 110.88711 * 276.00559 * 9 8 6 35 35 H 1.08998 * 110.91477 * 152.31440 * 9 8 6 36 36 H 1.08999 * 109.47186 * 299.80773 * 11 10 9 37 37 H 1.08994 * 109.47195 * 59.81300 * 11 10 9 38 38 H 1.09000 * 109.46834 * 179.81377 * 11 10 9 39 39 H 0.97005 * 119.99656 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5701 1.4426 -0.0006 5 6 4.0800 2.8851 0.0000 6 6 5.6100 2.8851 0.0000 7 1 5.9891 2.3086 0.8439 8 6 6.1479 4.3372 0.0556 9 6 7.5522 4.1569 -0.5879 10 6 7.2912 3.0510 -1.6330 11 6 8.4787 2.0871 -1.6762 12 6 7.0855 3.6697 -2.9916 13 1 7.1368 4.7419 -3.1100 14 6 6.8317 2.8668 -4.0835 15 7 6.6526 3.4068 -5.2692 16 14 6.7354 1.0128 -3.8773 17 1 8.0832 0.4219 -4.0759 18 1 6.2504 0.6912 -2.5110 19 1 5.7959 0.4512 -4.8809 20 8 6.1086 2.3475 -1.2353 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 3.9330 0.9288 -0.8908 29 1 3.9338 0.9286 0.8891 30 1 3.7170 3.3983 0.8905 31 1 3.7163 3.3995 -0.8895 32 1 5.5271 5.0089 -0.5373 33 1 6.2290 4.6868 1.0848 34 1 8.2798 3.8262 0.1534 35 1 7.8800 5.0774 -1.0709 36 1 9.3805 2.6336 -1.9520 37 1 8.6146 1.6337 -0.6944 38 1 8.2869 1.3072 -2.4132 39 1 6.4744 2.8420 -6.0374 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308658069.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:01 Heat of formation + Delta-G solvation = -73.478554 kcal Electronic energy + Delta-G solvation = -16536.147326 eV Core-core repulsion = 14056.817761 eV Total energy + Delta-G solvation = -2479.329565 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.77502 -35.98261 -33.35376 -31.97859 -31.14767 -30.09494 -27.04051 -25.09266 -23.72642 -21.55534 -20.71408 -20.24099 -19.22358 -17.02098 -15.76240 -15.23887 -14.93897 -14.00673 -13.69675 -13.50886 -13.37466 -12.92146 -12.76086 -12.40381 -12.15315 -12.04465 -11.64307 -11.41008 -11.20486 -11.10763 -10.83439 -10.69534 -10.67491 -10.34054 -10.11759 -9.98623 -9.86686 -9.78679 -9.50761 -8.86436 -8.47812 -8.07614 -6.03607 -4.10125 3.40815 3.50823 3.74355 4.58593 4.81706 4.89404 5.04377 5.19730 5.37933 5.42837 5.48793 5.52503 5.67922 5.71916 5.82012 5.85778 5.92019 6.01395 6.09470 6.10752 6.18634 6.28925 6.31652 6.32770 6.43561 6.48618 6.55866 6.64247 6.66862 6.74670 6.80391 6.84509 7.00676 7.31540 7.77848 8.39633 8.55983 8.97436 9.62884 11.07461 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023634 B = 0.008705 C = 0.007237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.425324 B = 3215.914096 C = 3867.940702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.116 4.116 5 C -0.113 4.113 6 C 0.076 3.924 7 H 0.047 0.953 8 C -0.144 4.144 9 C -0.131 4.131 10 C 0.190 3.810 11 C -0.148 4.148 12 C -0.518 4.518 13 H 0.074 0.926 14 C 0.083 3.917 15 N -0.897 5.897 16 Si 0.880 3.120 17 H -0.290 1.290 18 H -0.222 1.222 19 H -0.304 1.304 20 O -0.368 6.368 21 H 0.053 0.947 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.032 0.968 38 H 0.045 0.955 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.256 -3.797 12.094 14.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.154 4.154 5 C -0.151 4.151 6 C 0.018 3.982 7 H 0.065 0.935 8 C -0.182 4.182 9 C -0.168 4.168 10 C 0.153 3.847 11 C -0.205 4.205 12 C -0.555 4.555 13 H 0.092 0.908 14 C -0.120 4.120 15 N -0.535 5.535 16 Si 0.711 3.289 17 H -0.218 1.218 18 H -0.146 1.146 19 H -0.232 1.232 20 O -0.289 6.289 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.385 -3.983 11.809 14.003 hybrid contribution 0.103 -0.745 -0.040 0.753 sum -6.282 -4.728 11.769 14.154 Atomic orbital electron populations 1.21779 0.96307 1.01174 1.01632 1.21550 0.95395 0.97522 1.01924 1.21636 0.96231 0.96176 1.01650 1.21537 0.94222 0.97360 1.02250 1.21687 0.94943 0.96764 1.01704 1.22722 0.93321 0.92767 0.89420 0.93523 1.23193 0.97655 0.97726 0.99630 1.23033 0.95657 1.00577 0.97567 1.20063 0.82662 0.87770 0.94229 1.22315 0.99498 0.99708 0.98984 1.21098 1.50176 0.94892 0.89317 0.90763 1.25007 0.92879 0.99347 0.94797 1.69934 1.47880 1.36084 0.99561 0.87024 0.76532 0.85524 0.79854 1.21834 1.14570 1.23250 1.88799 1.44307 1.58947 1.36847 0.92780 0.93133 0.93003 0.91992 0.92343 0.92556 0.92021 0.91085 0.92838 0.92254 0.91127 0.90678 0.92223 0.92930 0.90794 0.92233 0.94937 0.93636 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16 2 C -0.13 -1.50 5.93 -26.73 -0.16 -1.66 16 3 C -0.12 -1.57 5.22 -26.73 -0.14 -1.71 16 4 C -0.12 -1.81 5.13 -26.73 -0.14 -1.94 16 5 C -0.11 -1.87 4.96 -26.73 -0.13 -2.01 16 6 C 0.08 1.43 3.43 -25.70 -0.09 1.34 16 7 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 8 C -0.14 -2.59 6.58 -24.36 -0.16 -2.75 16 9 C -0.13 -2.61 6.09 -24.66 -0.15 -2.76 16 10 C 0.19 4.53 0.78 -91.05 -0.07 4.46 16 11 C -0.15 -3.30 8.24 37.16 0.31 -3.00 16 12 C -0.52 -14.69 8.83 -34.44 -0.30 -14.99 16 13 H 0.07 2.26 7.73 -52.49 -0.41 1.86 16 14 C 0.08 2.45 5.45 -17.82 -0.10 2.36 16 15 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 16 Si 0.88 22.91 23.92 -169.99 -4.07 18.85 16 17 H -0.29 -7.41 6.87 56.52 0.39 -7.02 16 18 H -0.22 -5.61 5.36 56.52 0.30 -5.31 16 19 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 20 O -0.37 -8.64 7.01 -35.23 -0.25 -8.89 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.30 7.91 -51.93 -0.41 0.89 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.07 1.41 8.06 -51.93 -0.42 0.99 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.93 7.85 -51.93 -0.41 0.52 16 35 H 0.07 1.50 7.60 -51.93 -0.39 1.10 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 1.08 3.23 -51.93 -0.17 0.91 16 39 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 299.45 15.07 4.51 4.51 Total: -1.00 -30.62 299.45 -7.16 -37.78 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -7.37 Total: -1.24 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: -0.76 Total: -23.84 kcal Atomic # 7 Polarization: -27.94 SS G_CDS: 0.77 Total: -27.17 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.25 Total: -8.89 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.07 Total: 18.85 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.62 -7.16 -37.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308658069.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.701 kcal (2) G-P(sol) polarization free energy of solvation -30.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds